Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0003260

Physical Location & Seq

Genomic Coordinates Reverse (-)

30440744 .. 30442014

Gene Structure 1271 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g35330.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGAGACTGGCGGTGGAAAGATCAAGAAGGGCGCCGCAGGAAGGAAGGGCGGTGGCCCAAGGAAGAAGTCGGTGACTCGCTCCATCAAAGCCGGCCTGCAATTCCCGGTCGGTAGAATCGGCCGCTACTTGAAGAAGGGAAGGTATGCTCAGCGTGTCGGCTCTGGAGCTCCGGTCTACTTGGCCGCCGTGCTTGAGTACCTCGCAGCTGAAGTGCTGGAGTTGGCTGGAAATGCAGCCAGGGACAACAAGAAGACCAGGATTATCCCAAGGCATCTGCTACTGGCTATTAGGAACGATGAGGAGCTTGGAAAGCTTCTCTCTGGGGTTACTATTGCTCATGGAGGTGTCTTACCCAACATCAACCCAATTCTGCTACCCAAGAAGGCTGAGAAGGCCGGAGGAGGAGTCACCAAGGAGCCCAAGTCCCCATCGAAGGCCGGCAAGTCACCCAAGAAGGCGGCTGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04217 ko05034 ko05322 map04217 map05034 map05322

Pfam Domains

Protein Families

Histone Histone_H2A_C

Protein Analysis

157

Amino Acids

16.26

Weight (kDa)

10.66

Isoelectric Point (pI)

31.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	22 - 98	4.1e-12	Core histone H2A/H2B/H3/H4 domain
Histone_H2A_C	PF16211	101 - 133	5.8e-18	C-terminus of histone H2A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003260)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02560 AT5G02560
fragaria_vesca	FvH4_3g35330 FvH4_6g14320
malus_domestica	MD00G1106100.v1.1 MD03G1098100.v1.1 MD04G1121000.v1.1 MD11G1144600.v1.1 MD12G1138300.v1.1
prunus_persica	Prupe.6G082300_v2.0.a1 Prupe.6G250200_v2.0.a1 Prupe.6G250200_v2.0.a1 Prupe.6G250200_v2.0.a1
pyrus_communis	pycom03g08100 pycom11g09380 pycom12g13230
rosa_chinensis	RchiOBHm_Chr3g0467311 RchiOBHm_Chr5g0063441 RchiOBHm_Chr6g0270671 RchiOBHm_Chr7g0197231
rosa_laevigata	RLG00000015014 RLG00000024511 RLG00000035633
rosa_multiflora	Rmu_sc0000962.1_g000067 Rmu_sc0012351.1_g000002 Rmu_sc0019342.1_g000002
rosa_roxburghii	Rroxscaffold_6G00413740
rosa_rugosa	Rorug03G0086400 Rorug05G0357300
rosa_samantha	Rh3BG156200 Rh3CG155800 Rh3DG157000 Rh5BG431500 Rh5CG454800 Rh5DG445000
rosa_wichuraiana	Rw3G012770 Rw5G039110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	32
AccI	GTMKAC	1 cut(s)	177
AciI	CCGC	6 cut(s)	12, 36, 51, 124, 186, 461
AcoI	YGGCCR	2 cut(s)	121, 183
AcuI	CTGAAG	1 cut(s)	231
AcyI	GRCGYC	1 cut(s)	33
AfaI	GTAC	1 cut(s)	200
AfiI	CCNNNNNNNGG	2 cut(s)	42, 436
AgsI	TTSAA	1 cut(s)	133
AjnI	CCWGG	2 cut(s)	239, 257
AluBI	AGCT	4 cut(s)	170, 209, 307, 316
AluI	AGCT	4 cut(s)	170, 209, 307, 316
Alw21I	GWGCWC	1 cut(s)	172
AoxI	GGCC	6 cut(s)	55, 94, 121, 183, 396, 438
ApeKI	GCWGC	3 cut(s)	206, 236, 464
AspLEI	GCGC	1 cut(s)	35
AspS9I	GGNCC	1 cut(s)	56
AsuC2I	CCSGG	1 cut(s)	107
AsuHPI	GGTGA	3 cut(s)	85, 403, 441
BanI	GGYRCC	1 cut(s)	32
BanII	GRGCYC	2 cut(s)	172, 423
BbsI	GAAGAC	1 cut(s)	260
Bbv12I	GWGCWC	1 cut(s)	172
BbvI	GCAGC	3 cut(s)	218, 248, 451
BccI	CCATC	2 cut(s)	92, 439
BceAI	ACGGC	1 cut(s)	173
BciT130I	CCWGG	2 cut(s)	241, 259
BcnI	CCSGG	1 cut(s)	107
BfaI	CTAG	1 cut(s)	469
BfoI	RGCGCY	1 cut(s)	36
BisI	GCNGC	7 cut(s)	36, 124, 186, 207, 237, 462, 465
BlpI	GCTNAGC	1 cut(s)	150
BlsI	GCNGC	7 cut(s)	37, 125, 187, 208, 238, 463, 466
Bme1390I	CCNGG	3 cut(s)	107, 241, 259
BmgT120I	GGNCC	1 cut(s)	56
BmiI	GGNNCC	2 cut(s)	34, 420
BmrFI	CCNGG	3 cut(s)	107, 241, 259
BmsI	GCATC	1 cut(s)	283
BpiI	GAAGAC	1 cut(s)	260
BpmI	CTGGAG	2 cut(s)	186, 239
Bpu1102I	GCTNAGC	1 cut(s)	150
BpuEI	CTTGAG	1 cut(s)	215
BpuMI	CCSGG	1 cut(s)	107
BsaHI	GRCGYC	1 cut(s)	33
BsaJI	CCNNGG	4 cut(s)	59, 240, 269, 414
BsaWI	WCCGGW	1 cut(s)	172
BsaXI	ACNNNNNCTCC	6 cut(s)	159, 189, 393, 410, 423, 440
Bsc4I	CCNNNNNNNGG	2 cut(s)	42, 436
Bse118I	RCCGGY	2 cut(s)	92, 440
Bse1I	ACTGG	2 cut(s)	13, 288
BseBI	CCWGG	2 cut(s)	241, 259
BseDI	CCNNGG	4 cut(s)	59, 240, 269, 414
BseLI	CCNNNNNNNGG	2 cut(s)	42, 436
BseMII	CTCAG	2 cut(s)	164, 381
BseNI	ACTGG	2 cut(s)	13, 288
BseRI	GAGGAG	3 cut(s)	317, 417, 420
BseX3I	CGGCCG	1 cut(s)	121
BseXI	GCAGC	3 cut(s)	218, 248, 451
Bsh1285I	CGRYCG	2 cut(s)	111, 124
BshFI	GGCC	6 cut(s)	57, 96, 123, 185, 398, 440
BshNI	GGYRCC	1 cut(s)	32
BsiEI	CGRYCG	2 cut(s)	111, 124
BsiHKAI	GWGCWC	1 cut(s)	172
BsiSI	CCGG	5 cut(s)	93, 107, 173, 399, 441
BslFI	GGGAC	2 cut(s)	257, 412
BslI	CCNNNNNNNGG	2 cut(s)	42, 436
BsmFI	GGGAC	2 cut(s)	257, 412
BsnI	GGCC	6 cut(s)	57, 96, 123, 185, 398, 440
Bsp1286I	GDGCHC	2 cut(s)	172, 423
Bsp143I	GATC	1 cut(s)	21
Bsp1720I	GCTNAGC	1 cut(s)	150
BspACI	CCGC	6 cut(s)	12, 36, 51, 124, 186, 461
BspANI	GGCC	6 cut(s)	57, 96, 123, 185, 398, 440
BspCNI	CTCAG	2 cut(s)	163, 382
BspLI	GGNNCC	2 cut(s)	34, 420
BspT107I	GGYRCC	1 cut(s)	32
BsrFI	RCCGGY	2 cut(s)	92, 440
BsrI	ACTGG	2 cut(s)	13, 288
BssAI	RCCGGY	2 cut(s)	92, 440
BssECI	CCNNGG	4 cut(s)	59, 240, 269, 414
BssMI	GATC	1 cut(s)	21
BssNI	GRCGYC	1 cut(s)	33
BssT1I	CCWWGG	3 cut(s)	59, 269, 414
Bst2UI	CCWGG	2 cut(s)	241, 259
BstACI	GRCGYC	1 cut(s)	33
BstC8I	GCNNGC	3 cut(s)	94, 98, 442
BstDEI	CTNAG	2 cut(s)	150, 390
BstH2I	RGCGCY	1 cut(s)	36
BstHHI	GCGC	1 cut(s)	35
BstKTI	GATC	1 cut(s)	24
BstMBI	GATC	1 cut(s)	21
BstMCI	CGRYCG	2 cut(s)	111, 124
BstMWI	GCNNNNNNNGC	3 cut(s)	233, 313, 395
BstNI	CCWGG	2 cut(s)	241, 259
BstSCI	CCNGG	3 cut(s)	105, 239, 257
BstV1I	GCAGC	3 cut(s)	218, 248, 451
BstV2I	GAAGAC	1 cut(s)	260
BstZI	CGGCCG	1 cut(s)	121
BsuRI	GGCC	6 cut(s)	57, 96, 123, 185, 398, 440
Cac8I	GCNNGC	3 cut(s)	94, 98, 442
CfoI	GCGC	1 cut(s)	35
Cfr10I	RCCGGY	2 cut(s)	92, 440
Cfr13I	GGNCC	1 cut(s)	56
Csp6I	GTAC	1 cut(s)	199
CviAII	CATG	1 cut(s)	341
CviQI	GTAC	1 cut(s)	199
DdeI	CTNAG	2 cut(s)	150, 390
DinI	GGCGCC	1 cut(s)	34
DpnI	GATC	1 cut(s)	23
DpnII	GATC	1 cut(s)	21
EaeI	YGGCCR	2 cut(s)	121, 183
EagI	CGGCCG	1 cut(s)	121
Ecl136II	GAGCTC	1 cut(s)	170
EclXI	CGGCCG	1 cut(s)	121
Eco130I	CCWWGG	3 cut(s)	59, 269, 414
Eco24I	GRGCYC	2 cut(s)	172, 423
Eco52I	CGGCCG	1 cut(s)	121
Eco53kI	GAGCTC	1 cut(s)	170
Eco57I	CTGAAG	1 cut(s)	231
EcoICRI	GAGCTC	1 cut(s)	170
EcoRII	CCWGG	2 cut(s)	239, 257
EcoT14I	CCWWGG	3 cut(s)	59, 269, 414
EcoT38I	GRGCYC	2 cut(s)	172, 423
EgeI	GGCGCC	1 cut(s)	34
EheI	GGCGCC	1 cut(s)	34
ErhI	CCWWGG	3 cut(s)	59, 269, 414
FaeI	CATG	1 cut(s)	344
FaiI	YATR	2 cut(s)	147, 342
FaqI	GGGAC	2 cut(s)	257, 412
FatI	CATG	1 cut(s)	340
FblI	GTMKAC	1 cut(s)	177
Fnu4HI	GCNGC	7 cut(s)	36, 124, 186, 207, 237, 462, 465
FriOI	GRGCYC	2 cut(s)	172, 423
Fsp4HI	GCNGC	7 cut(s)	36, 124, 186, 207, 237, 462, 465
FspBI	CTAG	1 cut(s)	469
GlaI	GCGC	1 cut(s)	34
GluI	GCNGC	7 cut(s)	36, 124, 186, 207, 237, 462, 465
GsuI	CTGGAG	2 cut(s)	186, 239
HaeII	RGCGCY	1 cut(s)	36
HaeIII	GGCC	6 cut(s)	57, 96, 123, 185, 398, 440
HapII	CCGG	5 cut(s)	93, 107, 173, 399, 441
HhaI	GCGC	1 cut(s)	35
Hin1I	GRCGYC	1 cut(s)	33
Hin1II	CATG	1 cut(s)	344
Hin6I	GCGC	1 cut(s)	33
HinP1I	GCGC	1 cut(s)	33
HindIII	AAGCTT	1 cut(s)	314
HinfI	GANTC	3 cut(s)	76, 117, 408
HpaII	CCGG	5 cut(s)	93, 107, 173, 399, 441
HphI	GGTGA	3 cut(s)	85, 403, 441
Hpy166II	GTNNAC	1 cut(s)	178
Hpy188III	TCNNGA	2 cut(s)	25, 165
Hpy8I	GTNNAC	1 cut(s)	178
HpyAV	CCTTC	9 cut(s)	22, 36, 40, 130, 135, 379, 388, 430, 451
HpyCH4V	TGCA	2 cut(s)	100, 236
HpyF10VI	GCNNNNNNNGC	3 cut(s)	233, 313, 395
HpyF3I	CTNAG	2 cut(s)	150, 390
Hsp92I	GRCGYC	1 cut(s)	33
Hsp92II	CATG	1 cut(s)	344
HspAI	GCGC	1 cut(s)	33
KasI	GGCGCC	1 cut(s)	32
KroI	GCCGGC	2 cut(s)	92, 440
KroNI	GCCGGC	2 cut(s)	94, 442
Kzo9I	GATC	1 cut(s)	21
LmnI	GCTCC	5 cut(s)	86, 167, 175, 304, 418
Lsp1109I	GCAGC	3 cut(s)	218, 248, 451
LweI	GCATC	1 cut(s)	283
MaeI	CTAG	1 cut(s)	469
MaeIII	GTNAC	4 cut(s)	73, 328, 409, 447
MalI	GATC	1 cut(s)	23
MboI	GATC	1 cut(s)	21
MboII	GAAGA	3 cut(s)	76, 145, 265
MhlI	GDGCHC	2 cut(s)	172, 423
MluCI	AATT	2 cut(s)	101, 369
Mly113I	GGCGCC	1 cut(s)	33
MlyI	GAGTC	2 cut(s)	70, 417
MnlI	CCTC	5 cut(s)	212, 295, 338, 395, 398
MroNI	GCCGGC	2 cut(s)	92, 440
MslI	CAYNNNNRTG	1 cut(s)	345
MspA1I	CMGCKG	1 cut(s)	209
MspI	CCGG	5 cut(s)	93, 107, 173, 399, 441
MspR9I	CCNGG	3 cut(s)	107, 241, 259
MvaI	CCWGG	2 cut(s)	241, 259
MwoI	GCNNNNNNNGC	3 cut(s)	233, 313, 395
NaeI	GCCGGC	2 cut(s)	94, 442
NarI	GGCGCC	1 cut(s)	33
NciI	CCSGG	1 cut(s)	107
NdeII	GATC	1 cut(s)	21
NgoMIV	GCCGGC	2 cut(s)	92, 440
NlaIII	CATG	1 cut(s)	344
NlaIV	GGNNCC	2 cut(s)	34, 420
NmuCI	GTSAC	3 cut(s)	73, 409, 447
PdiI	GCCGGC	2 cut(s)	94, 442
PfeI	GAWTC	1 cut(s)	117
PkrI	GCNGC	7 cut(s)	37, 125, 187, 208, 238, 463, 466
PleI	GAGTC	2 cut(s)	70, 416
PluTI	GGCGCC	1 cut(s)	36
PpsI	GAGTC	2 cut(s)	70, 416
Psp124BI	GAGCTC	1 cut(s)	172
Psp6I	CCWGG	2 cut(s)	239, 257
PspGI	CCWGG	2 cut(s)	239, 257
PspN4I	GGNNCC	2 cut(s)	34, 420
PspPI	GGNCC	1 cut(s)	56
PvuII	CAGCTG	1 cut(s)	209
RsaI	GTAC	1 cut(s)	200
RsaNI	GTAC	1 cut(s)	199
RseI	CAYNNNNRTG	1 cut(s)	345
SacI	GAGCTC	1 cut(s)	172
SatI	GCNGC	7 cut(s)	36, 124, 186, 207, 237, 462, 465
Sau3AI	GATC	1 cut(s)	21
Sau96I	GGNCC	1 cut(s)	56
SchI	GAGTC	2 cut(s)	70, 417
ScrFI	CCNGG	3 cut(s)	107, 241, 259
SduI	GDGCHC	2 cut(s)	172, 423
SetI	ASST	7 cut(s)	146, 172, 204, 211, 309, 318, 349
SfaNI	GCATC	1 cut(s)	283
SfoI	GGCGCC	1 cut(s)	34
SmiMI	CAYNNNNRTG	1 cut(s)	345
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
Sse9I	AATT	2 cut(s)	101, 369
SsiI	CCGC	6 cut(s)	12, 36, 51, 124, 186, 461
SspDI	GGCGCC	1 cut(s)	32
SspMI	CTAG	1 cut(s)	469
SstI	GAGCTC	1 cut(s)	172
StyD4I	CCNGG	3 cut(s)	105, 239, 257
StyI	CCWWGG	3 cut(s)	59, 269, 414
TaqI	TCGA	1 cut(s)	434
TasI	AATT	2 cut(s)	101, 369
TauI	GCSGC	4 cut(s)	38, 126, 188, 464
TfiI	GAWTC	1 cut(s)	117
TseFI	GTSAC	3 cut(s)	73, 409, 447
TseI	GCWGC	3 cut(s)	206, 236, 464
Tsp45I	GTSAC	3 cut(s)	73, 409, 447
XmiI	GTMKAC	1 cut(s)	177
XspI	CTAG	1 cut(s)	469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.