Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003260

Physical Location & Seq

Genomic Coordinates Reverse (-)

28574598 .. 28575237

Gene Structure 640 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24282

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGGTGTTCCAGAGGGATCTGAAGTGCAAGCCAGAGGAAGGAAGAGCGATAGCCCCAAGAAGAAGGCGGTGACTCGCTCCGTCAAAGCCGGTCTACAATTTCCGGTCGGTAGGATTGGCCGCTACTTAAAGAAGGGAATGTATGCTCAGCGTGTCAGCTCCGGTGCTCCGGTCTACTTGGCCGGGTGCTTGAGTACCTCACAGCTAAAATTCCGCTCATCTCTTTCTCTTTGTCTCTCTTGCATTTCTAAATTTAGAGTTTCGGTGCTGCAGTTGTCTGGAAATGCAGCTTGGGGCAACAAGAAGAACATGATTATCCCAAGGCATCTGTTATTGGCTGTGAGGAATGACGAAGGGCTTGGCTTCTTGCTGGGGTTACTATTGGTCATGGAGTTGCGCTTCAATCAGGTTGAAATCAAGCAGCCTGAGATGATCAGTCACTTCTTTGTTGAGTCTGGCGTATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006325 GO:0006342 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0040029 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080090 GO:0097159 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04217 ko05034 ko05322 map04217 map05034 map05322

Pfam Domains

Protein Families

Histone Histone_H2A_C

Protein Analysis

155

Amino Acids

17.0

Weight (kDa)

10.29

Isoelectric Point (pI)

44.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003260)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02560 AT5G02560
fragaria_vesca	FvH4_3g35330 FvH4_6g14320
malus_domestica	MD00G1106100.v1.1 MD03G1098100.v1.1 MD04G1121000.v1.1 MD11G1144600.v1.1 MD12G1138300.v1.1
prunus_persica	Prupe.6G082300_v2.0.a1 Prupe.6G250200_v2.0.a1 Prupe.6G250200_v2.0.a1 Prupe.6G250200_v2.0.a1
pyrus_communis	pycom03g08100 pycom11g09380 pycom12g13230
rosa_chinensis	RchiOBHm_Chr3g0467311 RchiOBHm_Chr5g0063441 RchiOBHm_Chr6g0270671 RchiOBHm_Chr7g0197231
rosa_laevigata	RLG00000015014 RLG00000024511 RLG00000035633
rosa_multiflora	Rmu_sc0000962.1_g000067 Rmu_sc0012351.1_g000002 Rmu_sc0019342.1_g000002
rosa_roxburghii	Rroxscaffold_6G00413740
rosa_rugosa	Rorug03G0086400 Rorug05G0357300
rosa_samantha	Rh3BG156200 Rh3CG155800 Rh3DG157000 Rh5BG431500 Rh5CG454800 Rh5DG445000
rosa_wichuraiana	Rw3G012770 Rw5G039110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	216
AccI	GTMKAC	2 cut(s)	94, 174
AciI	CCGC	3 cut(s)	68, 121, 214
AclWI	GGATC	1 cut(s)	25
AcoI	YGGCCR	2 cut(s)	118, 180
AcsI	RAATTY	2 cut(s)	209, 251
AcuI	CTGAAG	1 cut(s)	42
AfaI	GTAC	1 cut(s)	196
AfiI	CCNNNNNNNGG	1 cut(s)	39
AgsI	TTSAA	2 cut(s)	403, 413
AjuI	GAANNNNNNNTTGG	2 cut(s)	274, 306
AluBI	AGCT	3 cut(s)	159, 205, 290
AluI	AGCT	3 cut(s)	159, 205, 290
Alw21I	GWGCWC	1 cut(s)	169
Alw26I	GTCTC	1 cut(s)	239
AlwI	GGATC	1 cut(s)	25
AoxI	GGCC	2 cut(s)	118, 180
ApeKI	GCWGC	3 cut(s)	268, 287, 421
ApoI	RAATTY	2 cut(s)	209, 251
AspLEI	GCGC	1 cut(s)	399
AsuC2I	CCSGG	1 cut(s)	184
AsuHPI	GGTGA	1 cut(s)	82
Bbv12I	GWGCWC	1 cut(s)	169
BbvI	GCAGC	3 cut(s)	255, 299, 433
BclI	TGATCA	1 cut(s)	432
BcnI	CCSGG	1 cut(s)	184
BcoDI	GTCTC	1 cut(s)	239
BfmI	CTRYAG	1 cut(s)	269
BisI	GCNGC	4 cut(s)	121, 269, 288, 422
BlpI	GCTNAGC	1 cut(s)	147
BlsI	GCNGC	4 cut(s)	122, 270, 289, 423
Bme1390I	CCNGG	1 cut(s)	184
BmrFI	CCNGG	1 cut(s)	184
BmsI	GCATC	1 cut(s)	334
Bpu1102I	GCTNAGC	1 cut(s)	147
BpuEI	CTTGAG	1 cut(s)	211
BpuMI	CCSGG	1 cut(s)	184
BsaJI	CCNNGG	1 cut(s)	320
BsaWI	WCCGGW	3 cut(s)	103, 161, 169
Bsc4I	CCNNNNNNNGG	1 cut(s)	39
Bse118I	RCCGGY	1 cut(s)	89
BseDI	CCNNGG	1 cut(s)	320
BseLI	CCNNNNNNNGG	1 cut(s)	39
BseMII	CTCAG	2 cut(s)	161, 417
BseXI	GCAGC	3 cut(s)	255, 299, 433
BseYI	CCCAGC	1 cut(s)	370
Bsh1285I	CGRYCG	1 cut(s)	108
BshFI	GGCC	2 cut(s)	120, 182
BsiEI	CGRYCG	1 cut(s)	108
BsiHKAI	GWGCWC	1 cut(s)	169
BsiSI	CCGG	5 cut(s)	90, 104, 162, 170, 183
BslI	CCNNNNNNNGG	1 cut(s)	39
BsmAI	GTCTC	1 cut(s)	239
BsnI	GGCC	2 cut(s)	120, 182
Bsp1286I	GDGCHC	1 cut(s)	169
Bsp143I	GATC	2 cut(s)	17, 432
Bsp1720I	GCTNAGC	1 cut(s)	147
BspACI	CCGC	3 cut(s)	68, 121, 214
BspANI	GGCC	2 cut(s)	120, 182
BspCNI	CTCAG	2 cut(s)	160, 418
BspMAI	CTGCAG	1 cut(s)	273
BspPI	GGATC	1 cut(s)	25
BspQI	GCTCTTC	1 cut(s)	38
BsrBI	CCGCTC	1 cut(s)	216
BsrFI	RCCGGY	1 cut(s)	89
BssAI	RCCGGY	1 cut(s)	89
BssECI	CCNNGG	1 cut(s)	320
BssMI	GATC	2 cut(s)	17, 432
BssT1I	CCWWGG	1 cut(s)	320
Bst6I	CTCTTC	1 cut(s)	38
BstC8I	GCNNGC	1 cut(s)	30
BstDEI	CTNAG	2 cut(s)	147, 426
BstHHI	GCGC	1 cut(s)	399
BstKTI	GATC	2 cut(s)	20, 435
BstMAI	GTCTC	1 cut(s)	239
BstMBI	GATC	2 cut(s)	17, 432
BstMCI	CGRYCG	1 cut(s)	108
BstSCI	CCNGG	1 cut(s)	182
BstSFI	CTRYAG	1 cut(s)	269
BstV1I	GCAGC	3 cut(s)	255, 299, 433
BstX2I	RGATCY	1 cut(s)	17
BstYI	RGATCY	1 cut(s)	17
BsuRI	GGCC	2 cut(s)	120, 182
Cac8I	GCNNGC	1 cut(s)	30
CfoI	GCGC	1 cut(s)	399
Cfr10I	RCCGGY	1 cut(s)	89
Csp6I	GTAC	1 cut(s)	195
CviAII	CATG	2 cut(s)	310, 388
CviQI	GTAC	1 cut(s)	195
DdeI	CTNAG	2 cut(s)	147, 426
DpnI	GATC	2 cut(s)	19, 434
DpnII	GATC	2 cut(s)	17, 432
EaeI	YGGCCR	2 cut(s)	118, 180
Eam1104I	CTCTTC	1 cut(s)	38
EarI	CTCTTC	1 cut(s)	38
Eco130I	CCWWGG	1 cut(s)	320
Eco57I	CTGAAG	1 cut(s)	42
EcoT14I	CCWWGG	1 cut(s)	320
ErhI	CCWWGG	1 cut(s)	320
FaeI	CATG	2 cut(s)	313, 391
FaiI	YATR	4 cut(s)	144, 311, 389, 466
FatI	CATG	2 cut(s)	309, 387
FbaI	TGATCA	1 cut(s)	432
FblI	GTMKAC	2 cut(s)	94, 174
Fnu4HI	GCNGC	4 cut(s)	121, 269, 288, 422
Fsp4HI	GCNGC	4 cut(s)	121, 269, 288, 422
GlaI	GCGC	1 cut(s)	398
GluI	GCNGC	4 cut(s)	121, 269, 288, 422
GsaI	CCCAGC	1 cut(s)	374
HaeIII	GGCC	2 cut(s)	120, 182
HapII	CCGG	5 cut(s)	90, 104, 162, 170, 183
HhaI	GCGC	1 cut(s)	399
Hin1II	CATG	2 cut(s)	313, 391
Hin6I	GCGC	1 cut(s)	397
HinP1I	GCGC	1 cut(s)	397
HinfI	GANTC	2 cut(s)	73, 452
HpaII	CCGG	5 cut(s)	90, 104, 162, 170, 183
HphI	GGTGA	1 cut(s)	82
Hpy166II	GTNNAC	2 cut(s)	95, 175
Hpy188I	TCNGA	1 cut(s)	22
Hpy188III	TCNNGA	2 cut(s)	11, 279
Hpy8I	GTNNAC	2 cut(s)	95, 175
HpyAV	CCTTC	4 cut(s)	33, 58, 127, 347
HpyCH4V	TGCA	4 cut(s)	28, 243, 271, 287
HpyF3I	CTNAG	2 cut(s)	147, 426
Hsp92II	CATG	2 cut(s)	313, 391
HspAI	GCGC	1 cut(s)	397
Ksp22I	TGATCA	1 cut(s)	432
Kzo9I	GATC	2 cut(s)	17, 432
LguI	GCTCTTC	1 cut(s)	38
LmnI	GCTCC	3 cut(s)	83, 164, 172
Lsp1109I	GCAGC	3 cut(s)	255, 299, 433
LweI	GCATC	1 cut(s)	334
MaeIII	GTNAC	3 cut(s)	70, 375, 437
MalI	GATC	2 cut(s)	19, 434
MbiI	CCGCTC	1 cut(s)	216
MboI	GATC	2 cut(s)	17, 432
MboII	GAAGA	3 cut(s)	55, 73, 316
MflI	RGATCY	1 cut(s)	17
MhlI	GDGCHC	1 cut(s)	169
MluCI	AATT	3 cut(s)	98, 209, 251
MlyI	GAGTC	2 cut(s)	67, 461
MnlI	CCTC	4 cut(s)	7, 29, 208, 336
MseI	TTAA	1 cut(s)	128
MspI	CCGG	5 cut(s)	90, 104, 162, 170, 183
MspR9I	CCNGG	1 cut(s)	184
NciI	CCSGG	1 cut(s)	184
NdeII	GATC	2 cut(s)	17, 432
NlaIII	CATG	2 cut(s)	313, 391
NmuCI	GTSAC	2 cut(s)	70, 437
PciSI	GCTCTTC	1 cut(s)	38
PkrI	GCNGC	4 cut(s)	122, 270, 289, 423
PleI	GAGTC	2 cut(s)	67, 460
PpsI	GAGTC	2 cut(s)	67, 460
PspFI	CCCAGC	1 cut(s)	370
PstI	CTGCAG	1 cut(s)	273
PsuI	RGATCY	1 cut(s)	17
RsaI	GTAC	1 cut(s)	196
RsaNI	GTAC	1 cut(s)	195
SapI	GCTCTTC	1 cut(s)	38
SaqAI	TTAA	1 cut(s)	128
SatI	GCNGC	4 cut(s)	121, 269, 288, 422
Sau3AI	GATC	2 cut(s)	17, 432
SchI	GAGTC	2 cut(s)	67, 461
ScrFI	CCNGG	1 cut(s)	184
SduI	GDGCHC	1 cut(s)	169
SetI	ASST	5 cut(s)	161, 200, 207, 292, 411
SfaNI	GCATC	1 cut(s)	334
SfcI	CTRYAG	1 cut(s)	269
SmlI	CTYRAG	1 cut(s)	190
SmoI	CTYRAG	1 cut(s)	190
Sse9I	AATT	3 cut(s)	98, 209, 251
SsiI	CCGC	3 cut(s)	68, 121, 214
StyD4I	CCNGG	1 cut(s)	182
StyI	CCWWGG	1 cut(s)	320
TasI	AATT	3 cut(s)	98, 209, 251
TauI	GCSGC	1 cut(s)	123
Tru1I	TTAA	1 cut(s)	128
Tru9I	TTAA	1 cut(s)	128
TseFI	GTSAC	2 cut(s)	70, 437
TseI	GCWGC	3 cut(s)	268, 287, 421
Tsp45I	GTSAC	2 cut(s)	70, 437
TspGWI	ACGGA	1 cut(s)	70
XapI	RAATTY	2 cut(s)	209, 251
XmiI	GTMKAC	2 cut(s)	94, 174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.