Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003260

Physical Location & Seq

Genomic Coordinates Reverse (-)

45275079 .. 45275666

Gene Structure 588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0357300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGTGATTTCTAACAAGATTAAGAGGACTCGGCATGTGCTCATGGAGTGGAGCGATACCAAGTTTGGGTCCCTATGTAATGATATCACAGCTATTAGGGAGCGGTTAGCTTTGTTTTATGATACATCTCTATCCTCTCCTCCTGATGAGGTGCGATTGGAATTAGAAGCGAAGTTGAATGATCTTCTTCAGAAAGAACAAGATTTTTGGAGGCAGCGGGCTAAGATATTCTGGTTGACTGATGGTGATATGAACACACATTTTTTTCATCAGTGTGCTAGTAATCGGAAGAAGAAGAATAGAATTAAAGTCCTCTTTAACGAGGATGGTTTATGGTGTACTGATGATGGTGAGATTGAGAGTATTGTCTTGAACTACTACAGGCCTCTTTTCACTTCCTCACAGCCACAGAGAATTTGTGAGGTTGTGTCTGTGCTTCCTCGATGCATCTCGGACGAAATGAATGTCTTACTTGCTAGAGAAGTGTCTGAAGTGGAAATTTTCACAGCCTTAAAGCAAATGCATCCAGCCAAAGCGCCGGTCCGGATGGATTTGCACCATGCTTCTATCAACATTTCTGGTCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04217 ko05034 ko05322 map04217 map05034 map05322

Pfam Domains

Protein Families

Histone Histone_H2A_C

Protein Analysis

195

Amino Acids

22.68

Weight (kDa)

6.6

Isoelectric Point (pI)

42.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003260)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02560 AT5G02560
fragaria_vesca	FvH4_3g35330 FvH4_6g14320
malus_domestica	MD00G1106100.v1.1 MD03G1098100.v1.1 MD04G1121000.v1.1 MD11G1144600.v1.1 MD12G1138300.v1.1
prunus_persica	Prupe.6G082300_v2.0.a1 Prupe.6G250200_v2.0.a1 Prupe.6G250200_v2.0.a1 Prupe.6G250200_v2.0.a1
pyrus_communis	pycom03g08100 pycom11g09380 pycom12g13230
rosa_chinensis	RchiOBHm_Chr3g0467311 RchiOBHm_Chr5g0063441 RchiOBHm_Chr6g0270671 RchiOBHm_Chr7g0197231
rosa_laevigata	RLG00000015014 RLG00000024511 RLG00000035633
rosa_multiflora	Rmu_sc0000962.1_g000067 Rmu_sc0012351.1_g000002 Rmu_sc0019342.1_g000002
rosa_roxburghii	Rroxscaffold_6G00413740
rosa_rugosa	Rorug03G0086400 Rorug05G0357300
rosa_samantha	Rh3BG156200 Rh3CG155800 Rh3DG157000 Rh5BG431500 Rh5CG454800 Rh5DG445000
rosa_wichuraiana	Rw3G012770 Rw5G039110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	103
AccIII	TCCGGA	1 cut(s)	543
AciI	CCGC	2 cut(s)	103, 217
AcsI	RAATTY	2 cut(s)	414, 498
AcuI	CTGAAG	2 cut(s)	173, 510
AfaI	GTAC	1 cut(s)	340
AfiI	CCNNNNNNNGG	1 cut(s)	66
AgsI	TTSAA	2 cut(s)	178, 373
AluBI	AGCT	2 cut(s)	92, 110
AluI	AGCT	2 cut(s)	92, 110
Alw21I	GWGCWC	1 cut(s)	42
Aor13HI	TCCGGA	1 cut(s)	543
AoxI	GGCC	1 cut(s)	383
ApeKI	GCWGC	1 cut(s)	214
ApoI	RAATTY	2 cut(s)	414, 498
ArsI	GACNNNNNNTTYG	4 cut(s)	450, 482, 525, 557
AspLEI	GCGC	1 cut(s)	538
AspS9I	GGNCC	3 cut(s)	69, 541, 581
AsuHPI	GGTGA	3 cut(s)	16, 257, 362
AvaII	GGWCC	3 cut(s)	69, 541, 581
Bbv12I	GWGCWC	1 cut(s)	42
BbvI	GCAGC	1 cut(s)	226
BccI	CCATC	4 cut(s)	236, 320, 341, 541
BfaI	CTAG	3 cut(s)	279, 477, 586
BfmI	CTRYAG	1 cut(s)	379
BfoI	RGCGCY	1 cut(s)	539
BisI	GCNGC	1 cut(s)	215
BlsI	GCNGC	1 cut(s)	216
Bme18I	GGWCC	3 cut(s)	69, 541, 581
BmgT120I	GGNCC	3 cut(s)	69, 541, 581
BmiI	GGNNCC	3 cut(s)	70, 71, 583
BmsI	GCATC	3 cut(s)	434, 456, 532
BsaWI	WCCGGW	1 cut(s)	543
Bsc4I	CCNNNNNNNGG	1 cut(s)	66
Bse118I	RCCGGY	1 cut(s)	538
BseAI	TCCGGA	1 cut(s)	543
BseGI	GGATG	3 cut(s)	331, 523, 552
BseLI	CCNNNNNNNGG	1 cut(s)	66
BseRI	GAGGAG	1 cut(s)	129
BseXI	GCAGC	1 cut(s)	226
BshFI	GGCC	1 cut(s)	385
BsiHKAI	GWGCWC	1 cut(s)	42
BsiSI	CCGG	2 cut(s)	539, 544
BslFI	GGGAC	2 cut(s)	55, 567
BslI	CCNNNNNNNGG	1 cut(s)	66
BsmFI	GGGAC	2 cut(s)	55, 567
BsnI	GGCC	1 cut(s)	385
Bsp1286I	GDGCHC	1 cut(s)	42
Bsp13I	TCCGGA	1 cut(s)	543
Bsp143I	GATC	1 cut(s)	181
BspACI	CCGC	2 cut(s)	103, 217
BspANI	GGCC	1 cut(s)	385
BspEI	TCCGGA	1 cut(s)	543
BspLI	GGNNCC	3 cut(s)	70, 71, 583
BsrBI	CCGCTC	1 cut(s)	103
BsrFI	RCCGGY	1 cut(s)	538
BssAI	RCCGGY	1 cut(s)	538
BssMI	GATC	1 cut(s)	181
BstC8I	GCNNGC	1 cut(s)	219
BstDEI	CTNAG	1 cut(s)	222
BstF5I	GGATG	3 cut(s)	331, 523, 552
BstH2I	RGCGCY	1 cut(s)	539
BstHHI	GCGC	1 cut(s)	538
BstKTI	GATC	1 cut(s)	184
BstMBI	GATC	1 cut(s)	181
BstNSI	RCATGY	1 cut(s)	38
BstSFI	CTRYAG	1 cut(s)	379
BstV1I	GCAGC	1 cut(s)	226
BsuRI	GGCC	1 cut(s)	385
BtsCI	GGATG	3 cut(s)	331, 523, 552
BtsIMutI	CAGTG	1 cut(s)	278
Cac8I	GCNNGC	1 cut(s)	219
CfoI	GCGC	1 cut(s)	538
Cfr10I	RCCGGY	1 cut(s)	538
Cfr13I	GGNCC	3 cut(s)	69, 541, 581
CpoI	CGGWCCG	1 cut(s)	541
Csp6I	GTAC	1 cut(s)	339
CspI	CGGWCCG	1 cut(s)	541
CviAII	CATG	3 cut(s)	35, 43, 560
CviJI	RGCY	7 cut(s)	92, 110, 221, 385, 406, 509, 530
CviKI_1	RGCY	7 cut(s)	92, 110, 221, 385, 406, 509, 530
CviQI	GTAC	1 cut(s)	339
DdeI	CTNAG	1 cut(s)	222
DpnI	GATC	1 cut(s)	183
DpnII	GATC	1 cut(s)	181
Eco147I	AGGCCT	1 cut(s)	385
Eco32I	GATATC	1 cut(s)	85
Eco47I	GGWCC	3 cut(s)	69, 541, 581
Eco57I	CTGAAG	2 cut(s)	173, 510
EcoO109I	RGGNCCY	1 cut(s)	69
EcoRV	GATATC	1 cut(s)	85
EcoT22I	ATGCAT	2 cut(s)	449, 525
FaeI	CATG	3 cut(s)	38, 46, 563
FaiI	YATR	7 cut(s)	36, 44, 76, 120, 251, 334, 561
FaqI	GGGAC	2 cut(s)	55, 567
FatI	CATG	3 cut(s)	34, 42, 559
FauI	CCCGC	1 cut(s)	210
Fnu4HI	GCNGC	1 cut(s)	215
FokI	GGATG	3 cut(s)	338, 510, 559
Fsp4HI	GCNGC	1 cut(s)	215
FspBI	CTAG	3 cut(s)	279, 477, 586
GlaI	GCGC	1 cut(s)	537
GluI	GCNGC	1 cut(s)	215
HaeII	RGCGCY	1 cut(s)	539
HaeIII	GGCC	1 cut(s)	385
HapII	CCGG	2 cut(s)	539, 544
HhaI	GCGC	1 cut(s)	538
Hin1II	CATG	3 cut(s)	38, 46, 563
Hin6I	GCGC	1 cut(s)	536
HinP1I	GCGC	1 cut(s)	536
HincII	GTYRAC	1 cut(s)	237
HindII	GTYRAC	1 cut(s)	237
HinfI	GANTC	1 cut(s)	28
HpaII	CCGG	2 cut(s)	539, 544
HphI	GGTGA	3 cut(s)	16, 257, 362
Hpy166II	GTNNAC	2 cut(s)	237, 339
Hpy188I	TCNGA	4 cut(s)	192, 288, 454, 490
Hpy188III	TCNNGA	3 cut(s)	143, 370, 544
Hpy8I	GTNNAC	2 cut(s)	237, 339
HpyCH4V	TGCA	3 cut(s)	447, 523, 556
HpyF3I	CTNAG	1 cut(s)	222
Hsp92II	CATG	3 cut(s)	38, 46, 563
HspAI	GCGC	1 cut(s)	536
KflI	GGGWCCC	1 cut(s)	69
Kpn2I	TCCGGA	1 cut(s)	543
Kzo9I	GATC	1 cut(s)	181
LmnI	GCTCC	2 cut(s)	51, 100
LpnPI	CCDG	7 cut(s)	156, 217, 367, 540, 552, 557, 564
Lsp1109I	GCAGC	1 cut(s)	226
LweI	GCATC	3 cut(s)	434, 456, 532
MaeI	CTAG	3 cut(s)	279, 477, 586
MalI	GATC	1 cut(s)	183
MbiI	CCGCTC	1 cut(s)	103
MboI	GATC	1 cut(s)	181
MboII	GAAGA	5 cut(s)	176, 179, 301, 304, 307
MhlI	GDGCHC	1 cut(s)	42
MluCI	AATT	4 cut(s)	161, 303, 414, 498
MlyI	GAGTC	1 cut(s)	22
Mph1103I	ATGCAT	2 cut(s)	449, 525
MroI	TCCGGA	1 cut(s)	543
MseI	TTAA	4 cut(s)	21, 306, 318, 512
MslI	CAYNNNNRTG	1 cut(s)	273
MspA1I	CMGCKG	1 cut(s)	217
MspI	CCGG	2 cut(s)	539, 544
NdeII	GATC	1 cut(s)	181
NlaIII	CATG	3 cut(s)	38, 46, 563
NlaIV	GGNNCC	3 cut(s)	70, 71, 583
NmeAIII	GCCGAG	1 cut(s)	10
NsiI	ATGCAT	2 cut(s)	449, 525
NspI	RCATGY	1 cut(s)	38
PceI	AGGCCT	1 cut(s)	385
PkrI	GCNGC	1 cut(s)	216
PleI	GAGTC	1 cut(s)	22
PpsI	GAGTC	1 cut(s)	22
PpuMI	RGGWCCY	1 cut(s)	69
Psp5II	RGGWCCY	1 cut(s)	69
PspN4I	GGNNCC	3 cut(s)	70, 71, 583
PspPI	GGNCC	3 cut(s)	69, 541, 581
PspPPI	RGGWCCY	1 cut(s)	69
RsaI	GTAC	1 cut(s)	340
RsaNI	GTAC	1 cut(s)	339
RseI	CAYNNNNRTG	1 cut(s)	273
Rsr2I	CGGWCCG	1 cut(s)	541
RsrII	CGGWCCG	1 cut(s)	541
SaqAI	TTAA	4 cut(s)	21, 306, 318, 512
SatI	GCNGC	1 cut(s)	215
Sau3AI	GATC	1 cut(s)	181
Sau96I	GGNCC	3 cut(s)	69, 541, 581
SchI	GAGTC	1 cut(s)	22
SduI	GDGCHC	1 cut(s)	42
SetI	ASST	4 cut(s)	94, 112, 153, 426
SfaNI	GCATC	3 cut(s)	434, 456, 532
SfcI	CTRYAG	1 cut(s)	379
SinI	GGWCC	3 cut(s)	69, 541, 581
SmiMI	CAYNNNNRTG	1 cut(s)	273
Sse9I	AATT	4 cut(s)	161, 303, 414, 498
SseBI	AGGCCT	1 cut(s)	385
SsiI	CCGC	2 cut(s)	103, 217
SspMI	CTAG	3 cut(s)	279, 477, 586
StuI	AGGCCT	1 cut(s)	385
TaqI	TCGA	1 cut(s)	442
TasI	AATT	4 cut(s)	161, 303, 414, 498
TatI	WGTACW	1 cut(s)	338
Tru1I	TTAA	4 cut(s)	21, 306, 318, 512
Tru9I	TTAA	4 cut(s)	21, 306, 318, 512
TscAI	CASTG	1 cut(s)	278
TseI	GCWGC	1 cut(s)	214
TspDTI	ATGAA	3 cut(s)	257, 266, 476
TspRI	CASTG	1 cut(s)	278
VpaK11BI	GGWCC	3 cut(s)	69, 541, 581
XapI	RAATTY	2 cut(s)	414, 498
XceI	RCATGY	1 cut(s)	38
XspI	CTAG	3 cut(s)	279, 477, 586
Zsp2I	ATGCAT	2 cut(s)	449, 525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.