Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0003260

Physical Location & Seq

Genomic Coordinates Reverse (-)

24550507 .. 24552009

Gene Structure 1503 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G250200.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGACACCGGGGTAAAGTTCAAGAAAGGCGCCGGAGGAAGGAGGGCAGGCGGTCCCAAAAAAAAACCGGTGTCCCGGTCCGTGAAAGCCGGTCTGCAGTTCCCGGTTGGACGTATTGGCCGGTATTTGAAAAATGGCCGATACTCTAAGCGAATCGGAACCGGAGCTCCTGTTTACCTGGCTGCTGTGCTCGAGTACCTTGCTGCTGAGGTTTTGGAACTGGCTGGAAATGCTGCAAGAGACAACAAGAAGAACCGCATTATTCCGAGGCATGTGCTATTGGCCGTGAGGAACGATGAAGAACTCGGAAAGCTCCTTGCTGGTGTGACAATTGCCCATGGAGGTGTGCTTCCCAACATCAACCCTGTGCTTCTGCCGAAGAAGCCAGAGAGGGTTGCGAAGAAGGAGCCCAAGTCTCCGGCCAAGGGCACCGCCACCAAGTCCCCCAAGAAGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04217 ko05034 ko05322 map04217 map05034 map05322

Pfam Domains

Protein Families

Histone Histone_H2A_C

Protein Analysis

153

Amino Acids

16.19

Weight (kDa)

10.77

Isoelectric Point (pI)

36.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003260)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02560 AT5G02560
fragaria_vesca	FvH4_3g35330 FvH4_6g14320
malus_domestica	MD00G1106100.v1.1 MD03G1098100.v1.1 MD04G1121000.v1.1 MD11G1144600.v1.1 MD12G1138300.v1.1
prunus_persica	Prupe.6G082300_v2.0.a1 Prupe.6G250200_v2.0.a1 Prupe.6G250200_v2.0.a1 Prupe.6G250200_v2.0.a1
pyrus_communis	pycom03g08100 pycom11g09380 pycom12g13230
rosa_chinensis	RchiOBHm_Chr3g0467311 RchiOBHm_Chr5g0063441 RchiOBHm_Chr6g0270671 RchiOBHm_Chr7g0197231
rosa_laevigata	RLG00000015014 RLG00000024511 RLG00000035633
rosa_multiflora	Rmu_sc0000962.1_g000067 Rmu_sc0012351.1_g000002 Rmu_sc0019342.1_g000002
rosa_roxburghii	Rroxscaffold_6G00413740
rosa_rugosa	Rorug03G0086400 Rorug05G0357300
rosa_samantha	Rh3BG156200 Rh3CG155800 Rh3DG157000 Rh5BG431500 Rh5CG454800 Rh5DG445000
rosa_wichuraiana	Rw3G012770 Rw5G039110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	29, 428
AciI	CCGC	3 cut(s)	51, 256, 432
AcoI	YGGCCR	4 cut(s)	118, 136, 282, 420
AcyI	GRCGYC	1 cut(s)	30
AfaI	GTAC	1 cut(s)	197
AfiI	CCNNNNNNNGG	3 cut(s)	39, 425, 451
AgeI	ACCGGT	1 cut(s)	67
AgsI	TTSAA	2 cut(s)	22, 130
AjnI	CCWGG	1 cut(s)	177
AloI	GAACNNNNNNTCC	2 cut(s)	151, 183
AluBI	AGCT	2 cut(s)	167, 313
AluI	AGCT	2 cut(s)	167, 313
Alw21I	GWGCWC	2 cut(s)	169, 192
Alw26I	GTCTC	2 cut(s)	234, 420
Ama87I	CYCGRG	1 cut(s)	191
AoxI	GGCC	4 cut(s)	118, 136, 282, 420
ApeKI	GCWGC	3 cut(s)	182, 203, 233
AsiGI	ACCGGT	1 cut(s)	67
AspLEI	GCGC	1 cut(s)	32
AspS9I	GGNCC	2 cut(s)	53, 78
AsuC2I	CCSGG	3 cut(s)	10, 76, 104
AvaI	CYCGRG	1 cut(s)	191
AvaII	GGWCC	2 cut(s)	53, 78
BaeGI	GKGCMC	1 cut(s)	431
BanI	GGYRCC	2 cut(s)	29, 428
BanII	GRGCYC	2 cut(s)	169, 411
Bbv12I	GWGCWC	2 cut(s)	169, 192
BbvCI	CCTCAGC	1 cut(s)	207
BbvI	GCAGC	3 cut(s)	169, 190, 220
BceAI	ACGGC	1 cut(s)	269
BcgI	CGANNNNNNTGC	4 cut(s)	182, 216, 256, 290
BciT130I	CCWGG	1 cut(s)	179
BcnI	CCSGG	3 cut(s)	10, 76, 104
BcoDI	GTCTC	2 cut(s)	234, 420
BfmI	CTRYAG	1 cut(s)	95
BfoI	RGCGCY	1 cut(s)	33
BisI	GCNGC	3 cut(s)	183, 204, 234
BlsI	GCNGC	3 cut(s)	184, 205, 235
Bme1390I	CCNGG	4 cut(s)	10, 76, 104, 179
Bme18I	GGWCC	2 cut(s)	53, 78
BmeT110I	CYCGRG	1 cut(s)	191
BmgT120I	GGNCC	2 cut(s)	53, 78
BmiI	GGNNCC	5 cut(s)	31, 55, 160, 408, 430
BmrFI	CCNGG	4 cut(s)	10, 76, 104, 179
Bpu10I	CCTNAGC	1 cut(s)	207
BpuMI	CCSGG	3 cut(s)	10, 76, 104
BsaHI	GRCGYC	1 cut(s)	30
BsaJI	CCNNGG	4 cut(s)	9, 266, 337, 423
BsaWI	WCCGGW	2 cut(s)	67, 161
BsaXI	ACNNNNNCTCC	6 cut(s)	151, 156, 181, 186, 398, 428
Bsc4I	CCNNNNNNNGG	3 cut(s)	39, 425, 451
Bse118I	RCCGGY	3 cut(s)	67, 89, 120
Bse1I	ACTGG	1 cut(s)	225
BseBI	CCWGG	1 cut(s)	179
BseDI	CCNNGG	4 cut(s)	9, 266, 337, 423
BseLI	CCNNNNNNNGG	3 cut(s)	39, 425, 451
BseMII	CTCAG	1 cut(s)	198
BseNI	ACTGG	1 cut(s)	225
BseSI	GKGCMC	1 cut(s)	431
BseXI	GCAGC	3 cut(s)	169, 190, 220
BshFI	GGCC	4 cut(s)	120, 138, 284, 422
BshNI	GGYRCC	2 cut(s)	29, 428
BshTI	ACCGGT	1 cut(s)	67
BsiHKAI	GWGCWC	2 cut(s)	169, 192
BsiHKCI	CYCGRG	1 cut(s)	191
BsiSI	CCGG	9 cut(s)	9, 33, 68, 76, 90, 104, 121, 162, 419
BslFI	GGGAC	3 cut(s)	39, 58, 427
BslI	CCNNNNNNNGG	3 cut(s)	39, 425, 451
BsmAI	GTCTC	2 cut(s)	234, 420
BsmFI	GGGAC	3 cut(s)	39, 58, 427
BsnI	GGCC	4 cut(s)	120, 138, 284, 422
BsoBI	CYCGRG	1 cut(s)	191
Bsp1286I	GDGCHC	4 cut(s)	169, 192, 411, 431
Bsp19I	CCATGG	1 cut(s)	337
BspACI	CCGC	3 cut(s)	51, 256, 432
BspANI	GGCC	4 cut(s)	120, 138, 284, 422
BspCNI	CTCAG	1 cut(s)	199
BspLI	GGNNCC	5 cut(s)	31, 55, 160, 408, 430
BspMAI	CTGCAG	1 cut(s)	99
BspT107I	GGYRCC	2 cut(s)	29, 428
BsrFI	RCCGGY	3 cut(s)	67, 89, 120
BsrI	ACTGG	1 cut(s)	225
BssAI	RCCGGY	3 cut(s)	67, 89, 120
BssECI	CCNNGG	4 cut(s)	9, 266, 337, 423
BssNI	GRCGYC	1 cut(s)	30
BssT1I	CCWWGG	2 cut(s)	337, 423
Bst2UI	CCWGG	1 cut(s)	179
BstACI	GRCGYC	1 cut(s)	30
BstC8I	GCNNGC	1 cut(s)	49
BstDEI	CTNAG	2 cut(s)	147, 207
BstDSI	CCRYGG	1 cut(s)	337
BstH2I	RGCGCY	1 cut(s)	33
BstHHI	GCGC	1 cut(s)	32
BstMAI	GTCTC	2 cut(s)	234, 420
BstMWI	GCNNNNNNNGC	2 cut(s)	230, 382
BstNI	CCWGG	1 cut(s)	179
BstNSI	RCATGY	1 cut(s)	275
BstSCI	CCNGG	4 cut(s)	8, 74, 102, 177
BstSFI	CTRYAG	1 cut(s)	95
BstSLI	GKGCMC	1 cut(s)	431
BstV1I	GCAGC	3 cut(s)	169, 190, 220
BsuRI	GGCC	4 cut(s)	120, 138, 284, 422
BtgI	CCRYGG	1 cut(s)	337
Cac8I	GCNNGC	1 cut(s)	49
CfoI	GCGC	1 cut(s)	32
Cfr10I	RCCGGY	3 cut(s)	67, 89, 120
Cfr13I	GGNCC	2 cut(s)	53, 78
CpoI	CGGWCCG	1 cut(s)	78
Csp6I	GTAC	1 cut(s)	196
CspAI	ACCGGT	1 cut(s)	67
CspI	CGGWCCG	1 cut(s)	78
CviAII	CATG	2 cut(s)	272, 338
CviQI	GTAC	1 cut(s)	196
DdeI	CTNAG	2 cut(s)	147, 207
DinI	GGCGCC	1 cut(s)	31
EaeI	YGGCCR	4 cut(s)	118, 136, 282, 420
Ecl136II	GAGCTC	1 cut(s)	167
Eco130I	CCWWGG	2 cut(s)	337, 423
Eco24I	GRGCYC	2 cut(s)	169, 411
Eco47I	GGWCC	2 cut(s)	53, 78
Eco53kI	GAGCTC	1 cut(s)	167
Eco88I	CYCGRG	1 cut(s)	191
EcoICRI	GAGCTC	1 cut(s)	167
EcoRII	CCWGG	1 cut(s)	177
EcoT14I	CCWWGG	2 cut(s)	337, 423
EcoT38I	GRGCYC	2 cut(s)	169, 411
EgeI	GGCGCC	1 cut(s)	31
EheI	GGCGCC	1 cut(s)	31
ErhI	CCWWGG	2 cut(s)	337, 423
FaeI	CATG	2 cut(s)	275, 341
FaiI	YATR	2 cut(s)	273, 339
FaqI	GGGAC	3 cut(s)	39, 58, 427
FatI	CATG	2 cut(s)	271, 337
Fnu4HI	GCNGC	3 cut(s)	183, 204, 234
FriOI	GRGCYC	2 cut(s)	169, 411
Fsp4HI	GCNGC	3 cut(s)	183, 204, 234
GlaI	GCGC	1 cut(s)	31
GluI	GCNGC	3 cut(s)	183, 204, 234
HaeII	RGCGCY	1 cut(s)	33
HaeIII	GGCC	4 cut(s)	120, 138, 284, 422
HapII	CCGG	9 cut(s)	9, 33, 68, 76, 90, 104, 121, 162, 419
HhaI	GCGC	1 cut(s)	32
Hin1I	GRCGYC	1 cut(s)	30
Hin1II	CATG	2 cut(s)	275, 341
Hin6I	GCGC	1 cut(s)	30
HinP1I	GCGC	1 cut(s)	30
HinfI	GANTC	1 cut(s)	153
HpaII	CCGG	9 cut(s)	9, 33, 68, 76, 90, 104, 121, 162, 419
Hpy166II	GTNNAC	1 cut(s)	175
Hpy188I	TCNGA	3 cut(s)	158, 267, 308
Hpy188III	TCNNGA	1 cut(s)	22
Hpy8I	GTNNAC	1 cut(s)	175
HpyAV	CCTTC	3 cut(s)	33, 397, 445
HpyCH4IV	ACGT	1 cut(s)	112
HpyCH4V	TGCA	2 cut(s)	97, 236
HpyF10VI	GCNNNNNNNGC	2 cut(s)	230, 382
HpyF3I	CTNAG	2 cut(s)	147, 207
HpySE526I	ACGT	1 cut(s)	112
Hsp92I	GRCGYC	1 cut(s)	30
Hsp92II	CATG	2 cut(s)	275, 341
HspAI	GCGC	1 cut(s)	30
KasI	GGCGCC	1 cut(s)	29
LmnI	GCTCC	4 cut(s)	164, 172, 318, 406
Lsp1109I	GCAGC	3 cut(s)	169, 190, 220
MaeII	ACGT	1 cut(s)	112
MaeIII	GTNAC	1 cut(s)	325
MboII	GAAGA	4 cut(s)	262, 311, 391, 412
MfeI	CAATTG	1 cut(s)	330
MhlI	GDGCHC	4 cut(s)	169, 192, 411, 431
MluCI	AATT	1 cut(s)	330
Mly113I	GGCGCC	1 cut(s)	30
MmeI	TCCRAC	1 cut(s)	88
MnlI	CCTC	7 cut(s)	29, 36, 202, 261, 282, 335, 384
MseI	TTAA	1 cut(s)	457
MslI	CAYNNNNRTG	1 cut(s)	342
MspI	CCGG	9 cut(s)	9, 33, 68, 76, 90, 104, 121, 162, 419
MspR9I	CCNGG	4 cut(s)	10, 76, 104, 179
MunI	CAATTG	1 cut(s)	330
MvaI	CCWGG	1 cut(s)	179
MwoI	GCNNNNNNNGC	2 cut(s)	230, 382
NarI	GGCGCC	1 cut(s)	30
NciI	CCSGG	3 cut(s)	10, 76, 104
NcoI	CCATGG	1 cut(s)	337
NlaIII	CATG	2 cut(s)	275, 341
NlaIV	GGNNCC	5 cut(s)	31, 55, 160, 408, 430
NmuCI	GTSAC	1 cut(s)	325
NspI	RCATGY	1 cut(s)	275
PaeR7I	CTCGAG	1 cut(s)	191
PfeI	GAWTC	1 cut(s)	153
PinAI	ACCGGT	1 cut(s)	67
PkrI	GCNGC	3 cut(s)	184, 205, 235
PluTI	GGCGCC	1 cut(s)	33
Psp124BI	GAGCTC	1 cut(s)	169
Psp6I	CCWGG	1 cut(s)	177
PspGI	CCWGG	1 cut(s)	177
PspN4I	GGNNCC	5 cut(s)	31, 55, 160, 408, 430
PspPI	GGNCC	2 cut(s)	53, 78
PspXI	VCTCGAGB	1 cut(s)	191
PstI	CTGCAG	1 cut(s)	99
RsaI	GTAC	1 cut(s)	197
RsaNI	GTAC	1 cut(s)	196
RseI	CAYNNNNRTG	1 cut(s)	342
Rsr2I	CGGWCCG	1 cut(s)	78
RsrII	CGGWCCG	1 cut(s)	78
SacI	GAGCTC	1 cut(s)	169
SaqAI	TTAA	1 cut(s)	457
SatI	GCNGC	3 cut(s)	183, 204, 234
Sau96I	GGNCC	2 cut(s)	53, 78
ScrFI	CCNGG	4 cut(s)	10, 76, 104, 179
SduI	GDGCHC	4 cut(s)	169, 192, 411, 431
SetI	ASST	7 cut(s)	115, 169, 180, 201, 213, 315, 346
SfcI	CTRYAG	1 cut(s)	95
SfoI	GGCGCC	1 cut(s)	31
Sfr274I	CTCGAG	1 cut(s)	191
SinI	GGWCC	2 cut(s)	53, 78
SlaI	CTCGAG	1 cut(s)	191
SmiMI	CAYNNNNRTG	1 cut(s)	342
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
Sse9I	AATT	1 cut(s)	330
SsiI	CCGC	3 cut(s)	51, 256, 432
SspDI	GGCGCC	1 cut(s)	29
SstI	GAGCTC	1 cut(s)	169
StyD4I	CCNGG	4 cut(s)	8, 74, 102, 177
StyI	CCWWGG	2 cut(s)	337, 423
TaiI	ACGT	1 cut(s)	115
TaqI	TCGA	1 cut(s)	192
TasI	AATT	1 cut(s)	330
TfiI	GAWTC	1 cut(s)	153
Tru1I	TTAA	1 cut(s)	457
Tru9I	TTAA	1 cut(s)	457
TseFI	GTSAC	1 cut(s)	325
TseI	GCWGC	3 cut(s)	182, 203, 233
Tsp45I	GTSAC	1 cut(s)	325
TspDTI	ATGAA	1 cut(s)	312
TspGWI	ACGGA	1 cut(s)	70
VpaK11BI	GGWCC	2 cut(s)	53, 78
XceI	RCATGY	1 cut(s)	275
XhoI	CTCGAG	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.