Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0003260

Physical Location & Seq

Genomic Coordinates Forward (+)

6513969 .. 6514625

Gene Structure 657 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g08100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGAGACTGGTGGTAAGTTGAAGAAAGGTGCCGGAGGAAGGAAAGGCGGCGGTCCGAAGAAGAAGGCGGTGACGCGGTCCGTCAGGGCCGGCCTCCAGTTCCCAGTCGGAAGAATCGGCCGCTACTTGAAGAAGGGACGTTATGCTCAAAGAGTCGGGTCTGGAGCTCCGGTTTACTTAGCCGCTGTGCTCGAGTACCTCGCAGCTGAAGTCCTGGAGTTGGCTGGAAATGCAGCTCGGGACAACAAGAAGAACAGGATTATCCCAAGGCATCTGCTACTGGCTGTGAGGAACGATGAGGAGCTTGGAAAATTGCTTGCTGGTGTGACCATTGCTCACGGCGGTGTGCTTCCAAACATCAACCCGGTCCTCCTGCCCAAGAAATCAGAGAAAGCCGCCGGAAAGGAGCCGAAATCTCCAACCAAGGCAACCAAGTCTCCCAAGAAGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04217 ko05034 ko05322 map04217 map05034 map05322

Pfam Domains

Protein Families

Histone Histone_H2A_C

Protein Analysis

151

Amino Acids

15.82

Weight (kDa)

10.66

Isoelectric Point (pI)

32.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003260)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02560 AT5G02560
fragaria_vesca	FvH4_3g35330 FvH4_6g14320
malus_domestica	MD00G1106100.v1.1 MD03G1098100.v1.1 MD04G1121000.v1.1 MD11G1144600.v1.1 MD12G1138300.v1.1
prunus_persica	Prupe.6G082300_v2.0.a1 Prupe.6G250200_v2.0.a1 Prupe.6G250200_v2.0.a1 Prupe.6G250200_v2.0.a1
pyrus_communis	pycom03g08100 pycom11g09380 pycom12g13230
rosa_chinensis	RchiOBHm_Chr3g0467311 RchiOBHm_Chr5g0063441 RchiOBHm_Chr6g0270671 RchiOBHm_Chr7g0197231
rosa_laevigata	RLG00000015014 RLG00000024511 RLG00000035633
rosa_multiflora	Rmu_sc0000962.1_g000067 Rmu_sc0012351.1_g000002 Rmu_sc0019342.1_g000002
rosa_roxburghii	Rroxscaffold_6G00413740
rosa_rugosa	Rorug03G0086400 Rorug05G0357300
rosa_samantha	Rh3BG156200 Rh3CG155800 Rh3DG157000 Rh5BG431500 Rh5CG454800 Rh5DG445000
rosa_wichuraiana	Rw3G012770 Rw5G039110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	29
AccII	CGCG	1 cut(s)	76
AciI	CCGC	8 cut(s)	48, 51, 68, 76, 121, 183, 342, 396
AcoI	YGGCCR	1 cut(s)	118
AcuI	CTGAAG	1 cut(s)	228
AfaI	GTAC	1 cut(s)	197
AfiI	CCNNNNNNNGG	2 cut(s)	39, 220
AgsI	TTSAA	2 cut(s)	22, 130
AjnI	CCWGG	1 cut(s)	213
AleI	CACNNNNGTG	1 cut(s)	342
AluBI	AGCT	4 cut(s)	167, 206, 236, 304
AluI	AGCT	4 cut(s)	167, 206, 236, 304
Alw21I	GWGCWC	2 cut(s)	169, 192
Alw26I	GTCTC	1 cut(s)	441
Ama87I	CYCGRG	2 cut(s)	191, 237
AoxI	GGCC	3 cut(s)	87, 91, 118
ApeKI	GCWGC	2 cut(s)	203, 233
AspS9I	GGNCC	4 cut(s)	53, 78, 87, 367
AsuC2I	CCSGG	1 cut(s)	365
AsuHPI	GGTGA	1 cut(s)	82
AvaI	CYCGRG	2 cut(s)	191, 237
AvaII	GGWCC	3 cut(s)	53, 78, 367
BanI	GGYRCC	1 cut(s)	29
BanII	GRGCYC	1 cut(s)	169
Bbv12I	GWGCWC	2 cut(s)	169, 192
BbvI	GCAGC	2 cut(s)	215, 245
BceAI	ACGGC	1 cut(s)	355
BciT130I	CCWGG	1 cut(s)	215
BcnI	CCSGG	1 cut(s)	365
BcoDI	GTCTC	1 cut(s)	441
BisI	GCNGC	6 cut(s)	49, 121, 183, 204, 234, 396
BlsI	GCNGC	6 cut(s)	50, 122, 184, 205, 235, 397
Bme1390I	CCNGG	2 cut(s)	215, 365
Bme18I	GGWCC	3 cut(s)	53, 78, 367
BmeT110I	CYCGRG	2 cut(s)	191, 237
BmgT120I	GGNCC	4 cut(s)	53, 78, 87, 367
BmiI	GGNNCC	2 cut(s)	31, 408
BmrFI	CCNGG	2 cut(s)	215, 365
BmrI	ACTGGG	1 cut(s)	98
BmsI	GCATC	1 cut(s)	280
BmuI	ACTGGG	1 cut(s)	98
BpmI	CTGGAG	3 cut(s)	80, 183, 236
BpuMI	CCSGG	1 cut(s)	365
BsaJI	CCNNGG	2 cut(s)	266, 423
BsaWI	WCCGGW	1 cut(s)	169
BsaXI	ACNNNNNCTCC	4 cut(s)	156, 186, 421, 451
Bsc4I	CCNNNNNNNGG	2 cut(s)	39, 220
Bse118I	RCCGGY	1 cut(s)	89
Bse1I	ACTGG	4 cut(s)	13, 97, 104, 285
Bse3DI	GCAATG	1 cut(s)	330
BseBI	CCWGG	1 cut(s)	215
BseDI	CCNNGG	2 cut(s)	266, 423
BseLI	CCNNNNNNNGG	2 cut(s)	39, 220
BseMI	GCAATG	1 cut(s)	330
BseNI	ACTGG	4 cut(s)	13, 97, 104, 285
BseRI	GAGGAG	1 cut(s)	314
BseX3I	CGGCCG	1 cut(s)	118
BseXI	GCAGC	2 cut(s)	215, 245
Bsh1236I	CGCG	1 cut(s)	76
Bsh1285I	CGRYCG	1 cut(s)	121
BshFI	GGCC	3 cut(s)	89, 93, 120
BshNI	GGYRCC	1 cut(s)	29
BsiEI	CGRYCG	1 cut(s)	121
BsiHKAI	GWGCWC	2 cut(s)	169, 192
BsiHKCI	CYCGRG	2 cut(s)	191, 237
BsiSI	CCGG	5 cut(s)	33, 90, 170, 365, 399
BslFI	GGGAC	2 cut(s)	150, 254
BslI	CCNNNNNNNGG	2 cut(s)	39, 220
BsmAI	GTCTC	1 cut(s)	441
BsmFI	GGGAC	2 cut(s)	150, 254
BsnI	GGCC	3 cut(s)	89, 93, 120
BsoBI	CYCGRG	2 cut(s)	191, 237
Bsp1286I	GDGCHC	2 cut(s)	169, 192
BspACI	CCGC	8 cut(s)	48, 51, 68, 76, 121, 183, 342, 396
BspANI	GGCC	3 cut(s)	89, 93, 120
BspFNI	CGCG	1 cut(s)	76
BspLI	GGNNCC	2 cut(s)	31, 408
BspT107I	GGYRCC	1 cut(s)	29
BsrDI	GCAATG	1 cut(s)	330
BsrFI	RCCGGY	1 cut(s)	89
BsrI	ACTGG	4 cut(s)	13, 97, 104, 285
BssAI	RCCGGY	1 cut(s)	89
BssECI	CCNNGG	2 cut(s)	266, 423
BssT1I	CCWWGG	2 cut(s)	266, 423
Bst2UI	CCWGG	1 cut(s)	215
BstC8I	GCNNGC	2 cut(s)	91, 318
BstDEI	CTNAG	2 cut(s)	178, 450
BstFNI	CGCG	1 cut(s)	76
BstMAI	GTCTC	1 cut(s)	441
BstMCI	CGRYCG	1 cut(s)	121
BstMWI	GCNNNNNNNGC	1 cut(s)	230
BstNI	CCWGG	1 cut(s)	215
BstSCI	CCNGG	2 cut(s)	213, 363
BstUI	CGCG	1 cut(s)	76
BstV1I	GCAGC	2 cut(s)	215, 245
BstZI	CGGCCG	1 cut(s)	118
BsuRI	GGCC	3 cut(s)	89, 93, 120
Cac8I	GCNNGC	2 cut(s)	91, 318
Cfr10I	RCCGGY	1 cut(s)	89
Cfr13I	GGNCC	4 cut(s)	53, 78, 87, 367
CpoI	CGGWCCG	2 cut(s)	53, 78
CseI	GACGC	1 cut(s)	82
Csp6I	GTAC	1 cut(s)	196
CspI	CGGWCCG	2 cut(s)	53, 78
CviQI	GTAC	1 cut(s)	196
DdeI	CTNAG	2 cut(s)	178, 450
EaeI	YGGCCR	1 cut(s)	118
EagI	CGGCCG	1 cut(s)	118
Ecl136II	GAGCTC	1 cut(s)	167
EclXI	CGGCCG	1 cut(s)	118
Eco130I	CCWWGG	2 cut(s)	266, 423
Eco24I	GRGCYC	1 cut(s)	169
Eco47I	GGWCC	3 cut(s)	53, 78, 367
Eco52I	CGGCCG	1 cut(s)	118
Eco53kI	GAGCTC	1 cut(s)	167
Eco57I	CTGAAG	1 cut(s)	228
Eco88I	CYCGRG	2 cut(s)	191, 237
EcoICRI	GAGCTC	1 cut(s)	167
EcoRII	CCWGG	1 cut(s)	213
EcoT14I	CCWWGG	2 cut(s)	266, 423
EcoT38I	GRGCYC	1 cut(s)	169
ErhI	CCWWGG	2 cut(s)	266, 423
FaiI	YATR	1 cut(s)	144
FaqI	GGGAC	2 cut(s)	150, 254
Fnu4HI	GCNGC	6 cut(s)	49, 121, 183, 204, 234, 396
FriOI	GRGCYC	1 cut(s)	169
FseI	GGCCGGCC	1 cut(s)	93
Fsp4HI	GCNGC	6 cut(s)	49, 121, 183, 204, 234, 396
GluI	GCNGC	6 cut(s)	49, 121, 183, 204, 234, 396
GsuI	CTGGAG	3 cut(s)	80, 183, 236
HaeIII	GGCC	3 cut(s)	89, 93, 120
HapII	CCGG	5 cut(s)	33, 90, 170, 365, 399
HgaI	GACGC	1 cut(s)	82
HinfI	GANTC	2 cut(s)	114, 153
HpaII	CCGG	5 cut(s)	33, 90, 170, 365, 399
HphI	GGTGA	1 cut(s)	82
Hpy166II	GTNNAC	1 cut(s)	175
Hpy188I	TCNGA	3 cut(s)	57, 110, 388
Hpy188III	TCNNGA	2 cut(s)	162, 239
Hpy8I	GTNNAC	1 cut(s)	175
HpyAV	CCTTC	4 cut(s)	33, 58, 127, 439
HpyCH4IV	ACGT	1 cut(s)	139
HpyCH4V	TGCA	1 cut(s)	233
HpyF10VI	GCNNNNNNNGC	1 cut(s)	230
HpyF3I	CTNAG	2 cut(s)	178, 450
HpySE526I	ACGT	1 cut(s)	139
KroI	GCCGGC	1 cut(s)	89
KroNI	GCCGGC	1 cut(s)	91
LmnI	GCTCC	4 cut(s)	164, 172, 301, 406
Lsp1109I	GCAGC	2 cut(s)	215, 245
LweI	GCATC	1 cut(s)	280
MaeII	ACGT	1 cut(s)	139
MaeIII	GTNAC	2 cut(s)	70, 325
MboII	GAAGA	6 cut(s)	34, 70, 73, 123, 142, 262
MhlI	GDGCHC	2 cut(s)	169, 192
MluCI	AATT	1 cut(s)	311
MlyI	GAGTC	1 cut(s)	162
MmeI	TCCRAC	2 cut(s)	88, 443
MnlI	CCTC	6 cut(s)	29, 104, 209, 282, 292, 380
MroNI	GCCGGC	1 cut(s)	89
MslI	CAYNNNNRTG	1 cut(s)	342
MspA1I	CMGCKG	2 cut(s)	185, 206
MspI	CCGG	5 cut(s)	33, 90, 170, 365, 399
MspR9I	CCNGG	2 cut(s)	215, 365
MvaI	CCWGG	1 cut(s)	215
MvnI	CGCG	1 cut(s)	76
MwoI	GCNNNNNNNGC	1 cut(s)	230
NaeI	GCCGGC	1 cut(s)	91
NciI	CCSGG	1 cut(s)	365
NgoMIV	GCCGGC	1 cut(s)	89
NlaIV	GGNNCC	2 cut(s)	31, 408
NmuCI	GTSAC	2 cut(s)	70, 325
OliI	CACNNNNGTG	1 cut(s)	342
PaeR7I	CTCGAG	1 cut(s)	191
PdiI	GCCGGC	1 cut(s)	91
PfeI	GAWTC	1 cut(s)	114
PflFI	GACNNNGTC	1 cut(s)	76
PfoI	TCCNGGA	1 cut(s)	213
PkrI	GCNGC	6 cut(s)	50, 122, 184, 205, 235, 397
PleI	GAGTC	1 cut(s)	161
PpsI	GAGTC	1 cut(s)	161
Psp124BI	GAGCTC	1 cut(s)	169
Psp6I	CCWGG	1 cut(s)	213
PspGI	CCWGG	1 cut(s)	213
PspN4I	GGNNCC	2 cut(s)	31, 408
PspPI	GGNCC	4 cut(s)	53, 78, 87, 367
PspXI	VCTCGAGB	1 cut(s)	191
PsyI	GACNNNGTC	1 cut(s)	76
PvuII	CAGCTG	1 cut(s)	206
RigI	GGCCGGCC	1 cut(s)	93
RsaI	GTAC	1 cut(s)	197
RsaNI	GTAC	1 cut(s)	196
RseI	CAYNNNNRTG	1 cut(s)	342
Rsr2I	CGGWCCG	2 cut(s)	53, 78
RsrII	CGGWCCG	2 cut(s)	53, 78
SacI	GAGCTC	1 cut(s)	169
SatI	GCNGC	6 cut(s)	49, 121, 183, 204, 234, 396
Sau96I	GGNCC	4 cut(s)	53, 78, 87, 367
SchI	GAGTC	1 cut(s)	162
ScrFI	CCNGG	2 cut(s)	215, 365
SduI	GDGCHC	2 cut(s)	169, 192
SetI	ASST	7 cut(s)	31, 142, 169, 201, 208, 238, 306
SfaNI	GCATC	1 cut(s)	280
Sfr274I	CTCGAG	1 cut(s)	191
SinI	GGWCC	3 cut(s)	53, 78, 367
SlaI	CTCGAG	1 cut(s)	191
SmiMI	CAYNNNNRTG	1 cut(s)	342
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
Sse9I	AATT	1 cut(s)	311
SsiI	CCGC	8 cut(s)	48, 51, 68, 76, 121, 183, 342, 396
SstI	GAGCTC	1 cut(s)	169
StyD4I	CCNGG	2 cut(s)	213, 363
StyI	CCWWGG	2 cut(s)	266, 423
TaiI	ACGT	1 cut(s)	142
TaqI	TCGA	1 cut(s)	192
TasI	AATT	1 cut(s)	311
TauI	GCSGC	4 cut(s)	51, 123, 185, 398
TfiI	GAWTC	1 cut(s)	114
TseFI	GTSAC	2 cut(s)	70, 325
TseI	GCWGC	2 cut(s)	203, 233
Tsp45I	GTSAC	2 cut(s)	70, 325
TspGWI	ACGGA	1 cut(s)	70
Tth111I	GACNNNGTC	1 cut(s)	76
VpaK11BI	GGWCC	3 cut(s)	53, 78, 367
XhoI	CTCGAG	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.