Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0003260

Physical Location & Seq

Genomic Coordinates Reverse (-)

20735038 .. 20735238

Gene Structure 201 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1121000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

ATGGCATTATCCCAAGGCATGTGCCTATTGGCCGTGAGGAACGATGAAGAACTTGGAAAGCTCCTGAAGGGTGTGACCATTGCTCATGCTGCTGTGCTTCCCAACATCAACCCTGTGCTTCTGCCAAAGAAGCCCGAGAGGGTTGCGAAGGAACCCAAGTCGCCCGTCAAAGCTGCCACCAAGTCCCCTAAGAAGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006325 GO:0006342 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0040029 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080090 GO:0097159 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04217 ko05034 ko05322 map04217 map05034 map05322

Pfam Domains

Protein Families

Histone Histone_H2A_C

Protein Analysis

67

Amino Acids

7.01

Weight (kDa)

10.01

Isoelectric Point (pI)

51.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone_H2A_C	PF16211	16 - 47	2.3e-15	C-terminus of histone H2A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003260)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02560 AT5G02560
fragaria_vesca	FvH4_3g35330 FvH4_6g14320
malus_domestica	MD00G1106100.v1.1 MD03G1098100.v1.1 MD04G1121000.v1.1 MD11G1144600.v1.1 MD12G1138300.v1.1
prunus_persica	Prupe.6G082300_v2.0.a1 Prupe.6G250200_v2.0.a1 Prupe.6G250200_v2.0.a1 Prupe.6G250200_v2.0.a1
pyrus_communis	pycom03g08100 pycom11g09380 pycom12g13230
rosa_chinensis	RchiOBHm_Chr3g0467311 RchiOBHm_Chr5g0063441 RchiOBHm_Chr6g0270671 RchiOBHm_Chr7g0197231
rosa_laevigata	RLG00000015014 RLG00000024511 RLG00000035633
rosa_multiflora	Rmu_sc0000962.1_g000067 Rmu_sc0012351.1_g000002 Rmu_sc0019342.1_g000002
rosa_roxburghii	Rroxscaffold_6G00413740
rosa_rugosa	Rorug03G0086400 Rorug05G0357300
rosa_samantha	Rh3BG156200 Rh3CG155800 Rh3DG157000 Rh5BG431500 Rh5CG454800 Rh5DG445000
rosa_wichuraiana	Rw3G012770 Rw5G039110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	30
AcuI	CTGAAG	1 cut(s)	86
AfiI	CCNNNNNNNGG	1 cut(s)	193
AluBI	AGCT	2 cut(s)	61, 173
AluI	AGCT	2 cut(s)	61, 173
Ama87I	CYCGRG	1 cut(s)	134
AoxI	GGCC	1 cut(s)	30
ApeKI	GCWGC	2 cut(s)	89, 173
AvaI	CYCGRG	1 cut(s)	134
BbvI	GCAGC	2 cut(s)	76, 160
BceAI	ACGGC	1 cut(s)	17
BcgI	CGANNNNNNTGC	2 cut(s)	125, 159
BisI	GCNGC	2 cut(s)	90, 174
BlsI	GCNGC	2 cut(s)	91, 175
BmeT110I	CYCGRG	1 cut(s)	134
BmiI	GGNNCC	1 cut(s)	153
BsaJI	CCNNGG	1 cut(s)	13
Bsc4I	CCNNNNNNNGG	1 cut(s)	193
Bse3DI	GCAATG	1 cut(s)	78
BseDI	CCNNGG	1 cut(s)	13
BseLI	CCNNNNNNNGG	1 cut(s)	193
BseMI	GCAATG	1 cut(s)	78
BseXI	GCAGC	2 cut(s)	76, 160
BshFI	GGCC	1 cut(s)	32
BsiHKCI	CYCGRG	1 cut(s)	134
BslFI	GGGAC	1 cut(s)	169
BslI	CCNNNNNNNGG	1 cut(s)	193
BsmFI	GGGAC	1 cut(s)	169
BsnI	GGCC	1 cut(s)	32
BsoBI	CYCGRG	1 cut(s)	134
BspANI	GGCC	1 cut(s)	32
BspLI	GGNNCC	1 cut(s)	153
BsrDI	GCAATG	1 cut(s)	78
BssECI	CCNNGG	1 cut(s)	13
BssT1I	CCWWGG	1 cut(s)	13
BstDEI	CTNAG	1 cut(s)	189
BstMWI	GCNNNNNNNGC	2 cut(s)	89, 130
BstNSI	RCATGY	1 cut(s)	22
BstV1I	GCAGC	2 cut(s)	76, 160
BsuRI	GGCC	1 cut(s)	32
CviAII	CATG	2 cut(s)	19, 86
CviJI	RGCY	4 cut(s)	32, 61, 133, 173
CviKI_1	RGCY	4 cut(s)	32, 61, 133, 173
DdeI	CTNAG	1 cut(s)	189
EaeI	YGGCCR	1 cut(s)	30
Eco130I	CCWWGG	1 cut(s)	13
Eco57I	CTGAAG	1 cut(s)	86
Eco88I	CYCGRG	1 cut(s)	134
EcoT14I	CCWWGG	1 cut(s)	13
ErhI	CCWWGG	1 cut(s)	13
FaeI	CATG	2 cut(s)	22, 89
FaiI	YATR	3 cut(s)	20, 87, 199
FaqI	GGGAC	1 cut(s)	169
FatI	CATG	2 cut(s)	18, 85
Fnu4HI	GCNGC	2 cut(s)	90, 174
Fsp4HI	GCNGC	2 cut(s)	90, 174
GluI	GCNGC	2 cut(s)	90, 174
HaeIII	GGCC	1 cut(s)	32
Hin1II	CATG	2 cut(s)	22, 89
Hpy188III	TCNNGA	1 cut(s)	64
HpyAV	CCTTC	3 cut(s)	61, 142, 187
HpyF10VI	GCNNNNNNNGC	2 cut(s)	89, 130
HpyF3I	CTNAG	1 cut(s)	189
Hsp92II	CATG	2 cut(s)	22, 89
LmnI	GCTCC	1 cut(s)	66
LpnPI	CCDG	2 cut(s)	77, 126
Lsp1109I	GCAGC	2 cut(s)	76, 160
MaeIII	GTNAC	1 cut(s)	73
MboII	GAAGA	1 cut(s)	59
MnlI	CCTC	2 cut(s)	30, 132
MwoI	GCNNNNNNNGC	2 cut(s)	89, 130
NlaIII	CATG	2 cut(s)	22, 89
NlaIV	GGNNCC	1 cut(s)	153
NmuCI	GTSAC	1 cut(s)	73
NspI	RCATGY	1 cut(s)	22
PkrI	GCNGC	2 cut(s)	91, 175
PspN4I	GGNNCC	1 cut(s)	153
SatI	GCNGC	2 cut(s)	90, 174
SetI	ASST	2 cut(s)	63, 175
StyI	CCWWGG	1 cut(s)	13
TseFI	GTSAC	1 cut(s)	73
TseI	GCWGC	2 cut(s)	89, 173
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	1 cut(s)	60
XceI	RCATGY	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.