Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003260

Physical Location & Seq

Genomic Coordinates Forward (+)

15154653 .. 15155303

Gene Structure 651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17643

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGGTGTTCCAGAGGGGTCTGAAGTGCCAGCTGGAGGAAGGAAGGGTGATGGCTCAAAGAAGAAGGCGGTGACTCAATCTGTCAAAGCCGGTCTGCAATTTTTGGTTGGTAGGATTGGCCGCTACTTGAAGAAGGGAAGGTATGCTCAATGTGTCAACTCCGGTGCTCCGGTCTACTTGGCCACTTGCTTGAGTACCTTGCAGCTGAAATTGCGCTCATCTCTCTCTCTGTCTCTCTGTCTCTCTTGCATTTCTAAATTTAGACTTTCGGTGTTGGAGTTGTCTGGAAATGTAGCTCGGGGCAACAAGAAGAACATGATTATCCCAAGGCATCTGTTATTGGCTGTGCGGAATGACAAAGAGCTTGGGTTCTTGCTGGGGTTACTATTGGTCATGGACTGGCGCTTTAATCAGGTTGAAATCAAGCAGCCTGAGATGATTAGTCATTGCATTGTTGCATCTGGCGTATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04217 ko05034 ko05322 map04217 map05034 map05322

Pfam Domains

Protein Families

Histone Histone_H2A_C

Protein Analysis

157

Amino Acids

17.03

Weight (kDa)

10.03

Isoelectric Point (pI)

33.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003260)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02560 AT5G02560
fragaria_vesca	FvH4_3g35330 FvH4_6g14320
malus_domestica	MD00G1106100.v1.1 MD03G1098100.v1.1 MD04G1121000.v1.1 MD11G1144600.v1.1 MD12G1138300.v1.1
prunus_persica	Prupe.6G082300_v2.0.a1 Prupe.6G250200_v2.0.a1 Prupe.6G250200_v2.0.a1 Prupe.6G250200_v2.0.a1
pyrus_communis	pycom03g08100 pycom11g09380 pycom12g13230
rosa_chinensis	RchiOBHm_Chr3g0467311 RchiOBHm_Chr5g0063441 RchiOBHm_Chr6g0270671 RchiOBHm_Chr7g0197231
rosa_laevigata	RLG00000015014 RLG00000024511 RLG00000035633
rosa_multiflora	Rmu_sc0000962.1_g000067 Rmu_sc0012351.1_g000002 Rmu_sc0019342.1_g000002
rosa_roxburghii	Rroxscaffold_6G00413740
rosa_rugosa	Rorug03G0086400 Rorug05G0357300
rosa_samantha	Rh3BG156200 Rh3CG155800 Rh3DG157000 Rh5BG431500 Rh5CG454800 Rh5DG445000
rosa_wichuraiana	Rw3G012770 Rw5G039110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	174
AciI	CCGC	3 cut(s)	68, 121, 349
AcoI	YGGCCR	2 cut(s)	118, 180
AcsI	RAATTY	1 cut(s)	257
AcuI	CTGAAG	1 cut(s)	42
AfaI	GTAC	1 cut(s)	196
AfiI	CCNNNNNNNGG	1 cut(s)	35
AgsI	TTSAA	2 cut(s)	130, 419
AluBI	AGCT	4 cut(s)	32, 205, 296, 364
AluI	AGCT	4 cut(s)	32, 205, 296, 364
Alw21I	GWGCWC	1 cut(s)	169
Alw26I	GTCTC	2 cut(s)	237, 245
Ama87I	CYCGRG	1 cut(s)	297
AoxI	GGCC	2 cut(s)	118, 180
ApeKI	GCWGC	2 cut(s)	202, 427
ApoI	RAATTY	1 cut(s)	257
AspLEI	GCGC	2 cut(s)	216, 405
AsuHPI	GGTGA	2 cut(s)	59, 82
AvaI	CYCGRG	1 cut(s)	297
BalI	TGGCCA	1 cut(s)	182
Bbv12I	GWGCWC	1 cut(s)	169
BbvI	GCAGC	2 cut(s)	214, 439
BccI	CCATC	1 cut(s)	44
BcoDI	GTCTC	2 cut(s)	237, 245
BfoI	RGCGCY	1 cut(s)	406
BisI	GCNGC	3 cut(s)	121, 203, 428
BlsI	GCNGC	3 cut(s)	122, 204, 429
BmeT110I	CYCGRG	1 cut(s)	297
BmsI	GCATC	2 cut(s)	340, 467
BpmI	CTGGAG	1 cut(s)	54
BpuEI	CTTGAG	1 cut(s)	211
BsaJI	CCNNGG	1 cut(s)	326
BsaWI	WCCGGW	2 cut(s)	161, 169
Bsc4I	CCNNNNNNNGG	1 cut(s)	35
Bse118I	RCCGGY	1 cut(s)	89
Bse1I	ACTGG	1 cut(s)	404
Bse3DI	GCAATG	1 cut(s)	445
BseDI	CCNNGG	1 cut(s)	326
BseLI	CCNNNNNNNGG	1 cut(s)	35
BseMI	GCAATG	1 cut(s)	445
BseMII	CTCAG	1 cut(s)	423
BseNI	ACTGG	1 cut(s)	404
BseXI	GCAGC	2 cut(s)	214, 439
BseYI	CCCAGC	1 cut(s)	376
BshFI	GGCC	2 cut(s)	120, 182
BsiHKAI	GWGCWC	1 cut(s)	169
BsiHKCI	CYCGRG	1 cut(s)	297
BsiSI	CCGG	3 cut(s)	90, 162, 170
BslI	CCNNNNNNNGG	1 cut(s)	35
BsmAI	GTCTC	2 cut(s)	237, 245
BsnI	GGCC	2 cut(s)	120, 182
BsoBI	CYCGRG	1 cut(s)	297
Bsp1286I	GDGCHC	1 cut(s)	169
BspACI	CCGC	3 cut(s)	68, 121, 349
BspANI	GGCC	2 cut(s)	120, 182
BspCNI	CTCAG	1 cut(s)	424
BsrDI	GCAATG	1 cut(s)	445
BsrFI	RCCGGY	1 cut(s)	89
BsrI	ACTGG	1 cut(s)	404
BssAI	RCCGGY	1 cut(s)	89
BssECI	CCNNGG	1 cut(s)	326
BssT1I	CCWWGG	1 cut(s)	326
BstC8I	GCNNGC	1 cut(s)	30
BstDEI	CTNAG	1 cut(s)	432
BstH2I	RGCGCY	1 cut(s)	406
BstHHI	GCGC	2 cut(s)	216, 405
BstMAI	GTCTC	2 cut(s)	237, 245
BstMWI	GCNNNNNNNGC	1 cut(s)	211
BstV1I	GCAGC	2 cut(s)	214, 439
BsuRI	GGCC	2 cut(s)	120, 182
Cac8I	GCNNGC	1 cut(s)	30
CfoI	GCGC	2 cut(s)	216, 405
Cfr10I	RCCGGY	1 cut(s)	89
Csp6I	GTAC	1 cut(s)	195
CviAII	CATG	2 cut(s)	316, 394
CviQI	GTAC	1 cut(s)	195
DdeI	CTNAG	1 cut(s)	432
EaeI	YGGCCR	2 cut(s)	118, 180
Eco130I	CCWWGG	1 cut(s)	326
Eco57I	CTGAAG	1 cut(s)	42
Eco88I	CYCGRG	1 cut(s)	297
EcoT14I	CCWWGG	1 cut(s)	326
ErhI	CCWWGG	1 cut(s)	326
FaeI	CATG	2 cut(s)	319, 397
FaiI	YATR	4 cut(s)	144, 317, 395, 472
FatI	CATG	2 cut(s)	315, 393
FblI	GTMKAC	1 cut(s)	174
Fnu4HI	GCNGC	3 cut(s)	121, 203, 428
Fsp4HI	GCNGC	3 cut(s)	121, 203, 428
GlaI	GCGC	2 cut(s)	215, 404
GluI	GCNGC	3 cut(s)	121, 203, 428
GsaI	CCCAGC	1 cut(s)	380
GsuI	CTGGAG	1 cut(s)	54
HaeII	RGCGCY	1 cut(s)	406
HaeIII	GGCC	2 cut(s)	120, 182
HapII	CCGG	3 cut(s)	90, 162, 170
HhaI	GCGC	2 cut(s)	216, 405
Hin1II	CATG	2 cut(s)	319, 397
Hin6I	GCGC	2 cut(s)	214, 403
HinP1I	GCGC	2 cut(s)	214, 403
HincII	GTYRAC	1 cut(s)	157
HindII	GTYRAC	1 cut(s)	157
HinfI	GANTC	1 cut(s)	73
HpaII	CCGG	3 cut(s)	90, 162, 170
HphI	GGTGA	2 cut(s)	59, 82
Hpy166II	GTNNAC	2 cut(s)	157, 175
Hpy188I	TCNGA	1 cut(s)	22
Hpy188III	TCNNGA	2 cut(s)	11, 285
Hpy8I	GTNNAC	2 cut(s)	157, 175
HpyAV	CCTTC	5 cut(s)	33, 37, 58, 127, 132
HpyCH4V	TGCA	5 cut(s)	97, 202, 249, 450, 458
HpyF10VI	GCNNNNNNNGC	1 cut(s)	211
HpyF3I	CTNAG	1 cut(s)	432
Hsp92II	CATG	2 cut(s)	319, 397
HspAI	GCGC	2 cut(s)	214, 403
LmnI	GCTCC	1 cut(s)	172
Lsp1109I	GCAGC	2 cut(s)	214, 439
LweI	GCATC	2 cut(s)	340, 467
MaeIII	GTNAC	2 cut(s)	70, 381
MboII	GAAGA	3 cut(s)	73, 142, 322
MhlI	GDGCHC	1 cut(s)	169
MlsI	TGGCCA	1 cut(s)	182
MluCI	AATT	3 cut(s)	98, 209, 257
MluNI	TGGCCA	1 cut(s)	182
MlyI	GAGTC	1 cut(s)	67
MmeI	TCCRAC	1 cut(s)	255
MnlI	CCTC	2 cut(s)	7, 29
Mox20I	TGGCCA	1 cut(s)	182
MscI	TGGCCA	1 cut(s)	182
MseI	TTAA	1 cut(s)	408
Msp20I	TGGCCA	1 cut(s)	182
MspA1I	CMGCKG	2 cut(s)	32, 205
MspI	CCGG	3 cut(s)	90, 162, 170
MwoI	GCNNNNNNNGC	1 cut(s)	211
NlaIII	CATG	2 cut(s)	319, 397
NmuCI	GTSAC	1 cut(s)	70
PkrI	GCNGC	3 cut(s)	122, 204, 429
PleI	GAGTC	1 cut(s)	67
PpsI	GAGTC	1 cut(s)	67
PspFI	CCCAGC	1 cut(s)	376
PvuII	CAGCTG	2 cut(s)	32, 205
RsaI	GTAC	1 cut(s)	196
RsaNI	GTAC	1 cut(s)	195
SaqAI	TTAA	1 cut(s)	408
SatI	GCNGC	3 cut(s)	121, 203, 428
SchI	GAGTC	1 cut(s)	67
SduI	GDGCHC	1 cut(s)	169
SetI	ASST	7 cut(s)	34, 143, 200, 207, 298, 366, 417
SfaNI	GCATC	2 cut(s)	340, 467
SmlI	CTYRAG	1 cut(s)	190
SmoI	CTYRAG	1 cut(s)	190
Sse9I	AATT	3 cut(s)	98, 209, 257
SsiI	CCGC	3 cut(s)	68, 121, 349
StyI	CCWWGG	1 cut(s)	326
TasI	AATT	3 cut(s)	98, 209, 257
TauI	GCSGC	1 cut(s)	123
Tru1I	TTAA	1 cut(s)	408
Tru9I	TTAA	1 cut(s)	408
TseFI	GTSAC	1 cut(s)	70
TseI	GCWGC	2 cut(s)	202, 427
Tsp45I	GTSAC	1 cut(s)	70
XapI	RAATTY	1 cut(s)	257
XmiI	GTMKAC	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.