Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0003260

Physical Location & Seq

Genomic Coordinates Forward (+)

8773077 .. 8774735

Gene Structure 1659 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g14320.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGAGACCGGAGGCAAGTTCAAGAAGGGCGCCGGAGGGAGGAAGGCCGGCGGTCCCAAGAAGAAGCCGGTGACCCGGTCCACCAAGGCCGGTCTGCAGTTCCCGGTCGGAAGAATCGGCCGGTACTTGAAGAACGGCCGGTATGCTCAGCGGGTCGGATCCGGAGCTCCTGTTTACCTTGCTGCTGTGCTCGAGTACCTTGCTGCTGAGGTTCTGGAATTGGCTGGAAATGCTGCAAGAGACAACAAGAAGAATCGCATTATCCCAAGGCATGTGTTATTGGCTGTGAGGAATGATGAAGAACTCGGAAAGCTGCTTGCTGGTGTGACAATTGCTCATGGTGGTGTGCTTCCCAACATCAACCCTGTGCTTCTGCCAAAGAACTCTGGCAAGACGGCTGCCAAGGAGCCCAAGTCTCCATCCAAAGCCACCAAGTCCCCTAAGAAGGCGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04217 ko05034 ko05322 map04217 map05034 map05322

Pfam Domains

Protein Families

Histone Histone_H2A_C

Protein Analysis

152

Amino Acids

15.86

Weight (kDa)

10.65

Isoelectric Point (pI)

32.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	20 - 97	3.8e-13	Core histone H2A/H2B/H3/H4 domain
Histone_H2A_C	PF16211	100 - 133	3.4e-18	C-terminus of histone H2A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003260)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02560 AT5G02560
fragaria_vesca	FvH4_3g35330 FvH4_6g14320
malus_domestica	MD00G1106100.v1.1 MD03G1098100.v1.1 MD04G1121000.v1.1 MD11G1144600.v1.1 MD12G1138300.v1.1
prunus_persica	Prupe.6G082300_v2.0.a1 Prupe.6G250200_v2.0.a1 Prupe.6G250200_v2.0.a1 Prupe.6G250200_v2.0.a1
pyrus_communis	pycom03g08100 pycom11g09380 pycom12g13230
rosa_chinensis	RchiOBHm_Chr3g0467311 RchiOBHm_Chr5g0063441 RchiOBHm_Chr6g0270671 RchiOBHm_Chr7g0197231
rosa_laevigata	RLG00000015014 RLG00000024511 RLG00000035633
rosa_multiflora	Rmu_sc0000962.1_g000067 Rmu_sc0012351.1_g000002 Rmu_sc0019342.1_g000002
rosa_roxburghii	Rroxscaffold_6G00413740
rosa_rugosa	Rorug03G0086400 Rorug05G0357300
rosa_samantha	Rh3BG156200 Rh3CG155800 Rh3DG157000 Rh5BG431500 Rh5CG454800 Rh5DG445000
rosa_wichuraiana	Rw3G012770 Rw5G039110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	29
AccIII	TCCGGA	1 cut(s)	161
AciI	CCGC	3 cut(s)	51, 151, 449
AclWI	GGATC	2 cut(s)	153, 166
AcoI	YGGCCR	2 cut(s)	118, 136
AcyI	GRCGYC	1 cut(s)	30
AfaI	GTAC	2 cut(s)	125, 197
AfiI	CCNNNNNNNGG	2 cut(s)	39, 445
AgsI	TTSAA	2 cut(s)	22, 130
AluBI	AGCT	2 cut(s)	167, 313
AluI	AGCT	2 cut(s)	167, 313
Alw21I	GWGCWC	2 cut(s)	169, 192
Alw26I	GTCTC	2 cut(s)	234, 420
AlwI	GGATC	2 cut(s)	153, 166
Ama87I	CYCGRG	1 cut(s)	191
Aor13HI	TCCGGA	1 cut(s)	161
AoxI	GGCC	4 cut(s)	45, 87, 118, 136
ApeKI	GCWGC	5 cut(s)	182, 203, 233, 313, 398
AspLEI	GCGC	1 cut(s)	32
AspS9I	GGNCC	2 cut(s)	53, 78
AsuC2I	CCSGG	2 cut(s)	76, 104
AsuHPI	GGTGA	1 cut(s)	82
AvaI	CYCGRG	1 cut(s)	191
AvaII	GGWCC	2 cut(s)	53, 78
BamHI	GGATCC	1 cut(s)	158
BanI	GGYRCC	1 cut(s)	29
BanII	GRGCYC	2 cut(s)	169, 411
Bbv12I	GWGCWC	2 cut(s)	169, 192
BbvCI	CCTCAGC	1 cut(s)	207
BbvI	GCAGC	5 cut(s)	169, 190, 220, 300, 385
BccI	CCATC	1 cut(s)	427
BceAI	ACGGC	2 cut(s)	151, 411
BcgI	CGANNNNNNTGC	2 cut(s)	182, 216
BcnI	CCSGG	2 cut(s)	76, 104
BcoDI	GTCTC	2 cut(s)	234, 420
BfmI	CTRYAG	1 cut(s)	95
BfoI	RGCGCY	1 cut(s)	33
BisI	GCNGC	6 cut(s)	183, 204, 234, 314, 399, 450
BlpI	GCTNAGC	1 cut(s)	147
BlsI	GCNGC	6 cut(s)	184, 205, 235, 315, 400, 451
Bme1390I	CCNGG	2 cut(s)	76, 104
Bme18I	GGWCC	2 cut(s)	53, 78
BmeT110I	CYCGRG	1 cut(s)	191
BmgT120I	GGNCC	2 cut(s)	53, 78
BmiI	GGNNCC	4 cut(s)	31, 55, 160, 408
BmrFI	CCNGG	2 cut(s)	76, 104
Bpu10I	CCTNAGC	1 cut(s)	207
Bpu1102I	GCTNAGC	1 cut(s)	147
BpuMI	CCSGG	2 cut(s)	76, 104
BsaHI	GRCGYC	1 cut(s)	30
BsaJI	CCNNGG	3 cut(s)	84, 266, 402
BsaWI	WCCGGW	2 cut(s)	8, 161
BsaXI	ACNNNNNCTCC	4 cut(s)	156, 186, 398, 428
Bsc4I	CCNNNNNNNGG	2 cut(s)	39, 445
Bse118I	RCCGGY	5 cut(s)	47, 67, 89, 120, 138
BseAI	TCCGGA	1 cut(s)	161
BseDI	CCNNGG	3 cut(s)	84, 266, 402
BseGI	GGATG	1 cut(s)	419
BseLI	CCNNNNNNNGG	2 cut(s)	39, 445
BseMII	CTCAG	2 cut(s)	161, 198
BseX3I	CGGCCG	2 cut(s)	118, 136
BseXI	GCAGC	5 cut(s)	169, 190, 220, 300, 385
Bsh1285I	CGRYCG	3 cut(s)	108, 121, 139
BshFI	GGCC	4 cut(s)	47, 89, 120, 138
BshNI	GGYRCC	1 cut(s)	29
BsiEI	CGRYCG	3 cut(s)	108, 121, 139
BsiHKAI	GWGCWC	2 cut(s)	169, 192
BsiHKCI	CYCGRG	1 cut(s)	191
BslFI	GGGAC	2 cut(s)	39, 421
BslI	CCNNNNNNNGG	2 cut(s)	39, 445
BsmAI	GTCTC	2 cut(s)	234, 420
BsmFI	GGGAC	2 cut(s)	39, 421
BsnI	GGCC	4 cut(s)	47, 89, 120, 138
BsoBI	CYCGRG	1 cut(s)	191
Bsp1286I	GDGCHC	3 cut(s)	169, 192, 411
Bsp13I	TCCGGA	1 cut(s)	161
Bsp143I	GATC	1 cut(s)	158
Bsp1720I	GCTNAGC	1 cut(s)	147
BspACI	CCGC	3 cut(s)	51, 151, 449
BspANI	GGCC	4 cut(s)	47, 89, 120, 138
BspCNI	CTCAG	2 cut(s)	160, 199
BspEI	TCCGGA	1 cut(s)	161
BspLI	GGNNCC	4 cut(s)	31, 55, 160, 408
BspMAI	CTGCAG	1 cut(s)	99
BspPI	GGATC	2 cut(s)	153, 166
BspT107I	GGYRCC	1 cut(s)	29
BsrFI	RCCGGY	5 cut(s)	47, 67, 89, 120, 138
BssAI	RCCGGY	5 cut(s)	47, 67, 89, 120, 138
BssECI	CCNNGG	3 cut(s)	84, 266, 402
BssMI	GATC	1 cut(s)	158
BssNI	GRCGYC	1 cut(s)	30
BssT1I	CCWWGG	3 cut(s)	84, 266, 402
BstACI	GRCGYC	1 cut(s)	30
BstC8I	GCNNGC	2 cut(s)	49, 318
BstDEI	CTNAG	4 cut(s)	147, 207, 441, 453
BstEII	GGTNACC	1 cut(s)	70
BstF5I	GGATG	1 cut(s)	419
BstH2I	RGCGCY	1 cut(s)	33
BstHHI	GCGC	1 cut(s)	32
BstKTI	GATC	1 cut(s)	161
BstMAI	GTCTC	2 cut(s)	234, 420
BstMBI	GATC	1 cut(s)	158
BstMCI	CGRYCG	3 cut(s)	108, 121, 139
BstMWI	GCNNNNNNNGC	1 cut(s)	230
BstNSI	RCATGY	1 cut(s)	275
BstPI	GGTNACC	1 cut(s)	70
BstSCI	CCNGG	2 cut(s)	74, 102
BstSFI	CTRYAG	1 cut(s)	95
BstV1I	GCAGC	5 cut(s)	169, 190, 220, 300, 385
BstX2I	RGATCY	1 cut(s)	158
BstYI	RGATCY	1 cut(s)	158
BstZI	CGGCCG	2 cut(s)	118, 136
BsuRI	GGCC	4 cut(s)	47, 89, 120, 138
BtsCI	GGATG	1 cut(s)	419
Cac8I	GCNNGC	2 cut(s)	49, 318
CfoI	GCGC	1 cut(s)	32
Cfr10I	RCCGGY	5 cut(s)	47, 67, 89, 120, 138
Cfr13I	GGNCC	2 cut(s)	53, 78
Csp6I	GTAC	2 cut(s)	124, 196
CviAII	CATG	2 cut(s)	272, 338
CviQI	GTAC	2 cut(s)	124, 196
DdeI	CTNAG	4 cut(s)	147, 207, 441, 453
DinI	GGCGCC	1 cut(s)	31
DpnI	GATC	1 cut(s)	160
DpnII	GATC	1 cut(s)	158
EaeI	YGGCCR	2 cut(s)	118, 136
EagI	CGGCCG	2 cut(s)	118, 136
Ecl136II	GAGCTC	1 cut(s)	167
EclXI	CGGCCG	2 cut(s)	118, 136
Eco130I	CCWWGG	3 cut(s)	84, 266, 402
Eco24I	GRGCYC	2 cut(s)	169, 411
Eco47I	GGWCC	2 cut(s)	53, 78
Eco52I	CGGCCG	2 cut(s)	118, 136
Eco53kI	GAGCTC	1 cut(s)	167
Eco88I	CYCGRG	1 cut(s)	191
Eco91I	GGTNACC	1 cut(s)	70
EcoICRI	GAGCTC	1 cut(s)	167
EcoO65I	GGTNACC	1 cut(s)	70
EcoT14I	CCWWGG	3 cut(s)	84, 266, 402
EcoT38I	GRGCYC	2 cut(s)	169, 411
EgeI	GGCGCC	1 cut(s)	31
EheI	GGCGCC	1 cut(s)	31
ErhI	CCWWGG	3 cut(s)	84, 266, 402
FaeI	CATG	2 cut(s)	275, 341
FaiI	YATR	3 cut(s)	144, 273, 339
FaqI	GGGAC	2 cut(s)	39, 421
FatI	CATG	2 cut(s)	271, 337
FauI	CCCGC	1 cut(s)	144
Fnu4HI	GCNGC	6 cut(s)	183, 204, 234, 314, 399, 450
FokI	GGATG	1 cut(s)	406
FriOI	GRGCYC	2 cut(s)	169, 411
Fsp4HI	GCNGC	6 cut(s)	183, 204, 234, 314, 399, 450
GlaI	GCGC	1 cut(s)	31
GluI	GCNGC	6 cut(s)	183, 204, 234, 314, 399, 450
HaeII	RGCGCY	1 cut(s)	33
HaeIII	GGCC	4 cut(s)	47, 89, 120, 138
HhaI	GCGC	1 cut(s)	32
Hin1I	GRCGYC	1 cut(s)	30
Hin1II	CATG	2 cut(s)	275, 341
Hin6I	GCGC	1 cut(s)	30
HinP1I	GCGC	1 cut(s)	30
HinfI	GANTC	2 cut(s)	114, 253
HphI	GGTGA	1 cut(s)	82
Hpy166II	GTNNAC	2 cut(s)	81, 175
Hpy188I	TCNGA	3 cut(s)	110, 158, 308
Hpy188III	TCNNGA	3 cut(s)	22, 162, 215
Hpy8I	GTNNAC	2 cut(s)	81, 175
HpyAV	CCTTC	3 cut(s)	19, 37, 439
HpyCH4V	TGCA	2 cut(s)	97, 236
HpyF10VI	GCNNNNNNNGC	1 cut(s)	230
HpyF3I	CTNAG	4 cut(s)	147, 207, 441, 453
Hsp92I	GRCGYC	1 cut(s)	30
Hsp92II	CATG	2 cut(s)	275, 341
HspAI	GCGC	1 cut(s)	30
KasI	GGCGCC	1 cut(s)	29
Kpn2I	TCCGGA	1 cut(s)	161
KroI	GCCGGC	1 cut(s)	47
KroNI	GCCGGC	1 cut(s)	49
Kzo9I	GATC	1 cut(s)	158
LmnI	GCTCC	3 cut(s)	164, 172, 406
Lsp1109I	GCAGC	5 cut(s)	169, 190, 220, 300, 385
MaeIII	GTNAC	2 cut(s)	70, 325
MalI	GATC	1 cut(s)	160
MboI	GATC	1 cut(s)	158
MboII	GAAGA	5 cut(s)	73, 123, 142, 262, 311
MfeI	CAATTG	1 cut(s)	330
MflI	RGATCY	1 cut(s)	158
MhlI	GDGCHC	3 cut(s)	169, 192, 411
MluCI	AATT	2 cut(s)	218, 330
Mly113I	GGCGCC	1 cut(s)	30
MmeI	TCCRAC	2 cut(s)	88, 136
MnlI	CCTC	5 cut(s)	5, 29, 33, 202, 282
MroI	TCCGGA	1 cut(s)	161
MroNI	GCCGGC	1 cut(s)	47
MslI	CAYNNNNRTG	1 cut(s)	342
MspA1I	CMGCKG	1 cut(s)	151
MspR9I	CCNGG	2 cut(s)	76, 104
MunI	CAATTG	1 cut(s)	330
MwoI	GCNNNNNNNGC	1 cut(s)	230
NaeI	GCCGGC	1 cut(s)	49
NarI	GGCGCC	1 cut(s)	30
NciI	CCSGG	2 cut(s)	76, 104
NdeII	GATC	1 cut(s)	158
NgoMIV	GCCGGC	1 cut(s)	47
NlaIII	CATG	2 cut(s)	275, 341
NlaIV	GGNNCC	4 cut(s)	31, 55, 160, 408
NmuCI	GTSAC	2 cut(s)	70, 325
NspI	RCATGY	1 cut(s)	275
PaeR7I	CTCGAG	1 cut(s)	191
PdiI	GCCGGC	1 cut(s)	49
PfeI	GAWTC	2 cut(s)	114, 253
PflFI	GACNNNGTC	1 cut(s)	76
PkrI	GCNGC	6 cut(s)	184, 205, 235, 315, 400, 451
PluTI	GGCGCC	1 cut(s)	33
Psp124BI	GAGCTC	1 cut(s)	169
PspEI	GGTNACC	1 cut(s)	70
PspN4I	GGNNCC	4 cut(s)	31, 55, 160, 408
PspPI	GGNCC	2 cut(s)	53, 78
PspXI	VCTCGAGB	1 cut(s)	191
PstI	CTGCAG	1 cut(s)	99
PsuI	RGATCY	1 cut(s)	158
PsyI	GACNNNGTC	1 cut(s)	76
RsaI	GTAC	2 cut(s)	125, 197
RsaNI	GTAC	2 cut(s)	124, 196
RseI	CAYNNNNRTG	1 cut(s)	342
SacI	GAGCTC	1 cut(s)	169
SatI	GCNGC	6 cut(s)	183, 204, 234, 314, 399, 450
Sau3AI	GATC	1 cut(s)	158
Sau96I	GGNCC	2 cut(s)	53, 78
ScrFI	CCNGG	2 cut(s)	76, 104
SduI	GDGCHC	3 cut(s)	169, 192, 411
SetI	ASST	5 cut(s)	169, 180, 201, 213, 315
SfcI	CTRYAG	1 cut(s)	95
SfoI	GGCGCC	1 cut(s)	31
Sfr274I	CTCGAG	1 cut(s)	191
SinI	GGWCC	2 cut(s)	53, 78
SlaI	CTCGAG	1 cut(s)	191
SmiMI	CAYNNNNRTG	1 cut(s)	342
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
Sse9I	AATT	2 cut(s)	218, 330
SsiI	CCGC	3 cut(s)	51, 151, 449
SspDI	GGCGCC	1 cut(s)	29
SstI	GAGCTC	1 cut(s)	169
StyD4I	CCNGG	2 cut(s)	74, 102
StyI	CCWWGG	3 cut(s)	84, 266, 402
TaqI	TCGA	1 cut(s)	192
TasI	AATT	2 cut(s)	218, 330
TauI	GCSGC	1 cut(s)	452
TfiI	GAWTC	2 cut(s)	114, 253
TseFI	GTSAC	2 cut(s)	70, 325
TseI	GCWGC	5 cut(s)	182, 203, 233, 313, 398
Tsp45I	GTSAC	2 cut(s)	70, 325
TspDTI	ATGAA	1 cut(s)	312
Tth111I	GACNNNGTC	1 cut(s)	76
VpaK11BI	GGWCC	2 cut(s)	53, 78
XceI	RCATGY	1 cut(s)	275
XhoI	CTCGAG	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.