Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0003260

Physical Location & Seq

Genomic Coordinates Forward (+)

5553060 .. 5554097

Gene Structure 1038 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G082300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGAGACTGGTGGTAAGGTGAAGAAAGGTGCTGGTGGAAGGAAAGGTGGGGGTCCGAAGAAGAAGCCGGTGACCCGGTCCGTCAAGGCCGGTCTGCAGTTTCCGGTCGGTCGTATTGGACGGTACTTGAAGAAGGGAAGGTATGCTCAGAGAGTTGGGTCTGGAGCTCCGGTTTACTTGGCCGCGGTTCTTGAGTACCTCGCAGCTGAAGTGCTTGAATTAGCTGGAAATGCAGCTCGGGACAACAAGAAGAACAGAATTATCCCAAGGCATCTGTTATTGGCTGTTAGGAACGATGAAGAGCTTGGGAAATTGCTCGCCGGTGTGACCATTGCTCATGGTGGTGTGCTTCCAAACATCAACCCAGTCCTCTTGCCCAAGAAATCAGAGAAGGCTGCCGCCAAAGAGCCTAAATCTCCATCCAAGGCCACCAAGTCTCCCAAGAAAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04217 ko05034 ko05322 map04217 map05034 map05322

Pfam Domains

Protein Families

Histone Histone_H2A_C

Protein Analysis

151

Amino Acids

15.8

Weight (kDa)

10.58

Isoelectric Point (pI)

35.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003260)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02560 AT5G02560
fragaria_vesca	FvH4_3g35330 FvH4_6g14320
malus_domestica	MD00G1106100.v1.1 MD03G1098100.v1.1 MD04G1121000.v1.1 MD11G1144600.v1.1 MD12G1138300.v1.1
prunus_persica	Prupe.6G082300_v2.0.a1 Prupe.6G250200_v2.0.a1 Prupe.6G250200_v2.0.a1 Prupe.6G250200_v2.0.a1
pyrus_communis	pycom03g08100 pycom11g09380 pycom12g13230
rosa_chinensis	RchiOBHm_Chr3g0467311 RchiOBHm_Chr5g0063441 RchiOBHm_Chr6g0270671 RchiOBHm_Chr7g0197231
rosa_laevigata	RLG00000015014 RLG00000024511 RLG00000035633
rosa_multiflora	Rmu_sc0000962.1_g000067 Rmu_sc0012351.1_g000002 Rmu_sc0019342.1_g000002
rosa_roxburghii	Rroxscaffold_6G00413740
rosa_rugosa	Rorug03G0086400 Rorug05G0357300
rosa_samantha	Rh3BG156200 Rh3CG155800 Rh3DG157000 Rh5BG431500 Rh5CG454800 Rh5DG445000
rosa_wichuraiana	Rw3G012770 Rw5G039110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	185
AciI	CCGC	3 cut(s)	183, 185, 399
AcoI	YGGCCR	1 cut(s)	180
AcuI	CTGAAG	1 cut(s)	228
AfaI	GTAC	2 cut(s)	125, 197
AgsI	TTSAA	2 cut(s)	130, 218
AluBI	AGCT	6 cut(s)	167, 206, 224, 236, 304, 449
AluI	AGCT	6 cut(s)	167, 206, 224, 236, 304, 449
Alw21I	GWGCWC	1 cut(s)	169
Alw26I	GTCTC	1 cut(s)	441
Ama87I	CYCGRG	1 cut(s)	237
AoxI	GGCC	3 cut(s)	87, 180, 426
ApeKI	GCWGC	3 cut(s)	203, 233, 395
AspS9I	GGNCC	2 cut(s)	53, 78
AsuC2I	CCSGG	1 cut(s)	76
AsuHPI	GGTGA	2 cut(s)	31, 82
AvaI	CYCGRG	1 cut(s)	237
AvaII	GGWCC	2 cut(s)	53, 78
BanII	GRGCYC	1 cut(s)	169
Bbv12I	GWGCWC	1 cut(s)	169
BbvI	GCAGC	3 cut(s)	215, 245, 382
BccI	CCATC	1 cut(s)	427
BcnI	CCSGG	1 cut(s)	76
BcoDI	GTCTC	1 cut(s)	441
BfmI	CTRYAG	1 cut(s)	95
BisI	GCNGC	5 cut(s)	183, 204, 234, 396, 399
BlsI	GCNGC	5 cut(s)	184, 205, 235, 397, 400
Bme1390I	CCNGG	1 cut(s)	76
Bme18I	GGWCC	2 cut(s)	53, 78
BmeT110I	CYCGRG	1 cut(s)	237
BmgT120I	GGNCC	2 cut(s)	53, 78
BmiI	GGNNCC	1 cut(s)	54
BmrFI	CCNGG	1 cut(s)	76
BmrI	ACTGGG	1 cut(s)	359
BmsI	GCATC	1 cut(s)	280
BmuI	ACTGGG	1 cut(s)	359
BpmI	CTGGAG	1 cut(s)	183
BpuEI	CTTGAG	1 cut(s)	212
BpuMI	CCSGG	1 cut(s)	76
BsaJI	CCNNGG	3 cut(s)	183, 266, 423
BsaWI	WCCGGW	2 cut(s)	103, 169
BsaXI	ACNNNNNCTCC	4 cut(s)	156, 186, 421, 451
Bse118I	RCCGGY	3 cut(s)	67, 89, 320
Bse1I	ACTGG	2 cut(s)	13, 365
Bse3DI	GCAATG	1 cut(s)	330
BseDI	CCNNGG	3 cut(s)	183, 266, 423
BseGI	GGATG	1 cut(s)	419
BseMI	GCAATG	1 cut(s)	330
BseMII	CTCAG	1 cut(s)	161
BseNI	ACTGG	2 cut(s)	13, 365
BseXI	GCAGC	3 cut(s)	215, 245, 382
Bsh1236I	CGCG	1 cut(s)	185
Bsh1285I	CGRYCG	2 cut(s)	108, 112
BshFI	GGCC	3 cut(s)	89, 182, 428
BsiEI	CGRYCG	2 cut(s)	108, 112
BsiHKAI	GWGCWC	1 cut(s)	169
BsiHKCI	CYCGRG	1 cut(s)	237
BsiSI	CCGG	6 cut(s)	68, 76, 90, 104, 170, 321
BslFI	GGGAC	1 cut(s)	254
BsmAI	GTCTC	1 cut(s)	441
BsmFI	GGGAC	1 cut(s)	254
BsnI	GGCC	3 cut(s)	89, 182, 428
BsoBI	CYCGRG	1 cut(s)	237
Bsp1286I	GDGCHC	1 cut(s)	169
BspACI	CCGC	3 cut(s)	183, 185, 399
BspANI	GGCC	3 cut(s)	89, 182, 428
BspCNI	CTCAG	1 cut(s)	160
BspFNI	CGCG	1 cut(s)	185
BspLI	GGNNCC	1 cut(s)	54
BspMAI	CTGCAG	1 cut(s)	99
BspQI	GCTCTTC	1 cut(s)	294
BsrDI	GCAATG	1 cut(s)	330
BsrFI	RCCGGY	3 cut(s)	67, 89, 320
BsrI	ACTGG	2 cut(s)	13, 365
BssAI	RCCGGY	3 cut(s)	67, 89, 320
BssECI	CCNNGG	3 cut(s)	183, 266, 423
BssT1I	CCWWGG	2 cut(s)	266, 423
Bst4CI	ACNGT	1 cut(s)	123
Bst6I	CTCTTC	1 cut(s)	294
BstC8I	GCNNGC	1 cut(s)	318
BstDEI	CTNAG	1 cut(s)	147
BstDSI	CCRYGG	1 cut(s)	183
BstEII	GGTNACC	1 cut(s)	70
BstF5I	GGATG	1 cut(s)	419
BstFNI	CGCG	1 cut(s)	185
BstMAI	GTCTC	1 cut(s)	441
BstMCI	CGRYCG	2 cut(s)	108, 112
BstMWI	GCNNNNNNNGC	1 cut(s)	230
BstPI	GGTNACC	1 cut(s)	70
BstSCI	CCNGG	1 cut(s)	74
BstSFI	CTRYAG	1 cut(s)	95
BstUI	CGCG	1 cut(s)	185
BstV1I	GCAGC	3 cut(s)	215, 245, 382
BsuRI	GGCC	3 cut(s)	89, 182, 428
BtgI	CCRYGG	1 cut(s)	183
BtsCI	GGATG	1 cut(s)	419
Cac8I	GCNNGC	1 cut(s)	318
Cfr10I	RCCGGY	3 cut(s)	67, 89, 320
Cfr13I	GGNCC	2 cut(s)	53, 78
Cfr42I	CCGCGG	1 cut(s)	186
CpoI	CGGWCCG	1 cut(s)	78
Csp6I	GTAC	2 cut(s)	124, 196
CspI	CGGWCCG	1 cut(s)	78
CviAII	CATG	1 cut(s)	338
CviQI	GTAC	2 cut(s)	124, 196
DdeI	CTNAG	1 cut(s)	147
EaeI	YGGCCR	1 cut(s)	180
Eam1104I	CTCTTC	1 cut(s)	294
EarI	CTCTTC	1 cut(s)	294
Ecl136II	GAGCTC	1 cut(s)	167
Eco130I	CCWWGG	2 cut(s)	266, 423
Eco24I	GRGCYC	1 cut(s)	169
Eco47I	GGWCC	2 cut(s)	53, 78
Eco53kI	GAGCTC	1 cut(s)	167
Eco57I	CTGAAG	1 cut(s)	228
Eco88I	CYCGRG	1 cut(s)	237
Eco91I	GGTNACC	1 cut(s)	70
EcoICRI	GAGCTC	1 cut(s)	167
EcoO65I	GGTNACC	1 cut(s)	70
EcoT14I	CCWWGG	2 cut(s)	266, 423
EcoT38I	GRGCYC	1 cut(s)	169
ErhI	CCWWGG	2 cut(s)	266, 423
FaeI	CATG	1 cut(s)	341
FaiI	YATR	2 cut(s)	144, 339
FaqI	GGGAC	1 cut(s)	254
FatI	CATG	1 cut(s)	337
Fnu4HI	GCNGC	5 cut(s)	183, 204, 234, 396, 399
FokI	GGATG	1 cut(s)	406
FriOI	GRGCYC	1 cut(s)	169
Fsp4HI	GCNGC	5 cut(s)	183, 204, 234, 396, 399
GluI	GCNGC	5 cut(s)	183, 204, 234, 396, 399
GsuI	CTGGAG	1 cut(s)	183
HaeIII	GGCC	3 cut(s)	89, 182, 428
HapII	CCGG	6 cut(s)	68, 76, 90, 104, 170, 321
Hin1II	CATG	1 cut(s)	341
HindIII	AAGCTT	1 cut(s)	447
HpaII	CCGG	6 cut(s)	68, 76, 90, 104, 170, 321
HphI	GGTGA	2 cut(s)	31, 82
Hpy166II	GTNNAC	1 cut(s)	175
Hpy188I	TCNGA	3 cut(s)	57, 150, 388
Hpy188III	TCNNGA	3 cut(s)	162, 191, 239
Hpy8I	GTNNAC	1 cut(s)	175
HpyAV	CCTTC	4 cut(s)	33, 127, 132, 385
HpyCH4III	ACNGT	1 cut(s)	123
HpyCH4V	TGCA	2 cut(s)	97, 233
HpyF10VI	GCNNNNNNNGC	1 cut(s)	230
HpyF3I	CTNAG	1 cut(s)	147
Hsp92II	CATG	1 cut(s)	341
KspI	CCGCGG	1 cut(s)	186
LguI	GCTCTTC	1 cut(s)	294
LmnI	GCTCC	2 cut(s)	164, 172
Lsp1109I	GCAGC	3 cut(s)	215, 245, 382
LweI	GCATC	1 cut(s)	280
MaeIII	GTNAC	2 cut(s)	70, 325
MboII	GAAGA	6 cut(s)	34, 70, 73, 142, 262, 311
MhlI	GDGCHC	1 cut(s)	169
MluCI	AATT	3 cut(s)	218, 258, 311
MnlI	CCTC	2 cut(s)	209, 380
MseI	TTAA	1 cut(s)	451
MslI	CAYNNNNRTG	1 cut(s)	342
MspA1I	CMGCKG	2 cut(s)	185, 206
MspI	CCGG	6 cut(s)	68, 76, 90, 104, 170, 321
MspR9I	CCNGG	1 cut(s)	76
MvnI	CGCG	1 cut(s)	185
MwoI	GCNNNNNNNGC	1 cut(s)	230
NciI	CCSGG	1 cut(s)	76
NlaIII	CATG	1 cut(s)	341
NlaIV	GGNNCC	1 cut(s)	54
NmuCI	GTSAC	2 cut(s)	70, 325
PciSI	GCTCTTC	1 cut(s)	294
PflFI	GACNNNGTC	1 cut(s)	76
PkrI	GCNGC	5 cut(s)	184, 205, 235, 397, 400
Psp124BI	GAGCTC	1 cut(s)	169
PspEI	GGTNACC	1 cut(s)	70
PspN4I	GGNNCC	1 cut(s)	54
PspPI	GGNCC	2 cut(s)	53, 78
PstI	CTGCAG	1 cut(s)	99
PsyI	GACNNNGTC	1 cut(s)	76
PvuII	CAGCTG	1 cut(s)	206
RsaI	GTAC	2 cut(s)	125, 197
RsaNI	GTAC	2 cut(s)	124, 196
RseI	CAYNNNNRTG	1 cut(s)	342
Rsr2I	CGGWCCG	1 cut(s)	78
RsrII	CGGWCCG	1 cut(s)	78
SacI	GAGCTC	1 cut(s)	169
SacII	CCGCGG	1 cut(s)	186
SapI	GCTCTTC	1 cut(s)	294
SaqAI	TTAA	1 cut(s)	451
SatI	GCNGC	5 cut(s)	183, 204, 234, 396, 399
Sau96I	GGNCC	2 cut(s)	53, 78
ScrFI	CCNGG	1 cut(s)	76
SduI	GDGCHC	1 cut(s)	169
SfaNI	GCATC	1 cut(s)	280
SfcI	CTRYAG	1 cut(s)	95
Sfr303I	CCGCGG	1 cut(s)	186
SgrAI	CRCCGGYG	1 cut(s)	320
SgrBI	CCGCGG	1 cut(s)	186
SinI	GGWCC	2 cut(s)	53, 78
SmiMI	CAYNNNNRTG	1 cut(s)	342
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
Sse9I	AATT	3 cut(s)	218, 258, 311
SsiI	CCGC	3 cut(s)	183, 185, 399
SstI	GAGCTC	1 cut(s)	169
StyD4I	CCNGG	1 cut(s)	74
StyI	CCWWGG	2 cut(s)	266, 423
TaaI	ACNGT	1 cut(s)	123
TaqII	GACCGA	1 cut(s)	98
TasI	AATT	3 cut(s)	218, 258, 311
TauI	GCSGC	2 cut(s)	185, 401
Tru1I	TTAA	1 cut(s)	451
Tru9I	TTAA	1 cut(s)	451
TseFI	GTSAC	2 cut(s)	70, 325
TseI	GCWGC	3 cut(s)	203, 233, 395
Tsp45I	GTSAC	2 cut(s)	70, 325
TspDTI	ATGAA	1 cut(s)	312
TspGWI	ACGGA	1 cut(s)	70
Tth111I	GACNNNGTC	1 cut(s)	76
VpaK11BI	GGWCC	2 cut(s)	53, 78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.