Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0003260

Physical Location & Seq

Genomic Coordinates Reverse (-)

69100049 .. 69101042

Gene Structure 994 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G039110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGAGACTGGCGGTGGTAAGATCAAGAAGGGCGCCGGAGGAAGGAAGGGTGGTGGCCCCAAGAAGAAGGCGGTGACCCGCTCCGTCAGAGCCGGCCTGCAATTTCCGGTCGGTAGGATTGGCCGTTACTTGAAGAAGGGAAGGTATGCTCAGCGTGTCGGCTCCGGAGCTCCGGTCTACTTGGCCGCCGTGCTTGAGTACCTCGCAGCTGAAGTGCTGGAGTTGGCCGGAAATGCAGCTCGGGACAACAAGAAGAACAGGATTATCCCAAGGCATCTGTTACTGGCTGTGAGGAACGATGAGGAACTTGGAAAGCTTCTTGCTGGGGTTACTATTGCTCATGGAGGTGTGCTACCCAACATCAACCCAATTCTGCTACCCAAGAAGGCTGAGAAGGCTGGAGGAGTTGCCAAGGAGCCCAAGTCCCCATCGAAGGCTGGCAAGTCACCCAAGAAGGCGGCGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04217 ko05034 ko05322 map04217 map05034 map05322

Pfam Domains

Protein Families

Histone Histone_H2A_C

Protein Analysis

155

Amino Acids

16.12

Weight (kDa)

10.66

Isoelectric Point (pI)

33.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	21 - 98	2.5e-12	Core histone H2A/H2B/H3/H4 domain
Histone_H2A_C	PF16211	101 - 133	1e-17	C-terminus of histone H2A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003260)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02560 AT5G02560
fragaria_vesca	FvH4_3g35330 FvH4_6g14320
malus_domestica	MD00G1106100.v1.1 MD03G1098100.v1.1 MD04G1121000.v1.1 MD11G1144600.v1.1 MD12G1138300.v1.1
prunus_persica	Prupe.6G082300_v2.0.a1 Prupe.6G250200_v2.0.a1 Prupe.6G250200_v2.0.a1 Prupe.6G250200_v2.0.a1
pyrus_communis	pycom03g08100 pycom11g09380 pycom12g13230
rosa_chinensis	RchiOBHm_Chr3g0467311 RchiOBHm_Chr5g0063441 RchiOBHm_Chr6g0270671 RchiOBHm_Chr7g0197231
rosa_laevigata	RLG00000015014 RLG00000024511 RLG00000035633
rosa_multiflora	Rmu_sc0000962.1_g000067 Rmu_sc0012351.1_g000002 Rmu_sc0019342.1_g000002
rosa_roxburghii	Rroxscaffold_6G00413740
rosa_rugosa	Rorug03G0086400 Rorug05G0357300
rosa_samantha	Rh3BG156200 Rh3CG155800 Rh3DG157000 Rh5BG431500 Rh5CG454800 Rh5DG445000
rosa_wichuraiana	Rw3G012770 Rw5G039110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	32
AccBSI	CCGCTC	1 cut(s)	81
AccI	GTMKAC	1 cut(s)	177
AccIII	TCCGGA	1 cut(s)	164
AciI	CCGC	6 cut(s)	12, 71, 79, 186, 458, 461
AcoI	YGGCCR	3 cut(s)	121, 183, 225
AcuI	CTGAAG	1 cut(s)	231
AcyI	GRCGYC	1 cut(s)	33
AfaI	GTAC	1 cut(s)	200
AfiI	CCNNNNNNNGG	2 cut(s)	42, 433
AgsI	TTSAA	1 cut(s)	133
AluBI	AGCT	4 cut(s)	170, 209, 239, 316
AluI	AGCT	4 cut(s)	170, 209, 239, 316
Alw21I	GWGCWC	1 cut(s)	172
Ama87I	CYCGRG	1 cut(s)	240
Aor13HI	TCCGGA	1 cut(s)	164
AoxI	GGCC	5 cut(s)	55, 94, 121, 183, 225
ApeKI	GCWGC	2 cut(s)	206, 236
AspLEI	GCGC	1 cut(s)	35
AspS9I	GGNCC	1 cut(s)	56
AsuHPI	GGTGA	2 cut(s)	85, 438
AvaI	CYCGRG	1 cut(s)	240
BanI	GGYRCC	1 cut(s)	32
BanII	GRGCYC	2 cut(s)	172, 420
Bbv12I	GWGCWC	1 cut(s)	172
BbvI	GCAGC	2 cut(s)	218, 248
BccI	CCATC	1 cut(s)	436
BceAI	ACGGC	2 cut(s)	108, 173
BfoI	RGCGCY	1 cut(s)	36
BisI	GCNGC	5 cut(s)	186, 207, 237, 459, 462
BlpI	GCTNAGC	1 cut(s)	150
BlsI	GCNGC	5 cut(s)	187, 208, 238, 460, 463
BmeT110I	CYCGRG	1 cut(s)	240
BmgT120I	GGNCC	1 cut(s)	56
BmiI	GGNNCC	4 cut(s)	34, 58, 163, 417
BmsI	GCATC	1 cut(s)	283
BpmI	CTGGAG	2 cut(s)	239, 420
Bpu1102I	GCTNAGC	1 cut(s)	150
BpuEI	CTTGAG	1 cut(s)	215
BsaHI	GRCGYC	1 cut(s)	33
BsaJI	CCNNGG	2 cut(s)	269, 411
BsaWI	WCCGGW	3 cut(s)	106, 164, 172
BsaXI	ACNNNNNCTCC	4 cut(s)	159, 189, 407, 437
Bsc4I	CCNNNNNNNGG	2 cut(s)	42, 433
Bse118I	RCCGGY	1 cut(s)	92
Bse1I	ACTGG	2 cut(s)	13, 288
BseAI	TCCGGA	1 cut(s)	164
BseDI	CCNNGG	2 cut(s)	269, 411
BseLI	CCNNNNNNNGG	2 cut(s)	42, 433
BseMII	CTCAG	2 cut(s)	164, 381
BseNI	ACTGG	2 cut(s)	13, 288
BseRI	GAGGAG	1 cut(s)	417
BseXI	GCAGC	2 cut(s)	218, 248
BseYI	CCCAGC	1 cut(s)	323
Bsh1285I	CGRYCG	1 cut(s)	111
BshFI	GGCC	5 cut(s)	57, 96, 123, 185, 227
BshNI	GGYRCC	1 cut(s)	32
BsiEI	CGRYCG	1 cut(s)	111
BsiHKAI	GWGCWC	1 cut(s)	172
BsiHKCI	CYCGRG	1 cut(s)	240
BsiSI	CCGG	6 cut(s)	36, 93, 107, 165, 173, 228
BslFI	GGGAC	2 cut(s)	257, 409
BslI	CCNNNNNNNGG	2 cut(s)	42, 433
BsmFI	GGGAC	2 cut(s)	257, 409
BsnI	GGCC	5 cut(s)	57, 96, 123, 185, 227
BsoBI	CYCGRG	1 cut(s)	240
Bsp1286I	GDGCHC	2 cut(s)	172, 420
Bsp13I	TCCGGA	1 cut(s)	164
Bsp143I	GATC	1 cut(s)	21
Bsp1720I	GCTNAGC	1 cut(s)	150
BspACI	CCGC	6 cut(s)	12, 71, 79, 186, 458, 461
BspANI	GGCC	5 cut(s)	57, 96, 123, 185, 227
BspCNI	CTCAG	2 cut(s)	163, 382
BspEI	TCCGGA	1 cut(s)	164
BspLI	GGNNCC	4 cut(s)	34, 58, 163, 417
BspT107I	GGYRCC	1 cut(s)	32
BsrBI	CCGCTC	1 cut(s)	81
BsrFI	RCCGGY	1 cut(s)	92
BsrI	ACTGG	2 cut(s)	13, 288
BssAI	RCCGGY	1 cut(s)	92
BssECI	CCNNGG	2 cut(s)	269, 411
BssMI	GATC	1 cut(s)	21
BssNI	GRCGYC	1 cut(s)	33
BssT1I	CCWWGG	2 cut(s)	269, 411
BstACI	GRCGYC	1 cut(s)	33
BstC8I	GCNNGC	3 cut(s)	94, 98, 439
BstDEI	CTNAG	2 cut(s)	150, 390
BstEII	GGTNACC	1 cut(s)	73
BstH2I	RGCGCY	1 cut(s)	36
BstHHI	GCGC	1 cut(s)	35
BstKTI	GATC	1 cut(s)	24
BstMBI	GATC	1 cut(s)	21
BstMCI	CGRYCG	1 cut(s)	111
BstMWI	GCNNNNNNNGC	2 cut(s)	233, 395
BstPI	GGTNACC	1 cut(s)	73
BstV1I	GCAGC	2 cut(s)	218, 248
BsuRI	GGCC	5 cut(s)	57, 96, 123, 185, 227
Cac8I	GCNNGC	3 cut(s)	94, 98, 439
CfoI	GCGC	1 cut(s)	35
Cfr10I	RCCGGY	1 cut(s)	92
Cfr13I	GGNCC	1 cut(s)	56
Csp6I	GTAC	1 cut(s)	199
CviAII	CATG	1 cut(s)	341
CviQI	GTAC	1 cut(s)	199
DdeI	CTNAG	2 cut(s)	150, 390
DinI	GGCGCC	1 cut(s)	34
DpnI	GATC	1 cut(s)	23
DpnII	GATC	1 cut(s)	21
EaeI	YGGCCR	3 cut(s)	121, 183, 225
Ecl136II	GAGCTC	1 cut(s)	170
Eco130I	CCWWGG	2 cut(s)	269, 411
Eco24I	GRGCYC	2 cut(s)	172, 420
Eco53kI	GAGCTC	1 cut(s)	170
Eco57I	CTGAAG	1 cut(s)	231
Eco88I	CYCGRG	1 cut(s)	240
Eco91I	GGTNACC	1 cut(s)	73
EcoICRI	GAGCTC	1 cut(s)	170
EcoO65I	GGTNACC	1 cut(s)	73
EcoT14I	CCWWGG	2 cut(s)	269, 411
EcoT38I	GRGCYC	2 cut(s)	172, 420
EgeI	GGCGCC	1 cut(s)	34
EheI	GGCGCC	1 cut(s)	34
ErhI	CCWWGG	2 cut(s)	269, 411
FaeI	CATG	1 cut(s)	344
FaiI	YATR	3 cut(s)	147, 342, 466
FaqI	GGGAC	2 cut(s)	257, 409
FatI	CATG	1 cut(s)	340
FauI	CCCGC	1 cut(s)	86
FblI	GTMKAC	1 cut(s)	177
Fnu4HI	GCNGC	5 cut(s)	186, 207, 237, 459, 462
FriOI	GRGCYC	2 cut(s)	172, 420
Fsp4HI	GCNGC	5 cut(s)	186, 207, 237, 459, 462
GlaI	GCGC	1 cut(s)	34
GluI	GCNGC	5 cut(s)	186, 207, 237, 459, 462
GsaI	CCCAGC	1 cut(s)	327
GsuI	CTGGAG	2 cut(s)	239, 420
HaeII	RGCGCY	1 cut(s)	36
HaeIII	GGCC	5 cut(s)	57, 96, 123, 185, 227
HapII	CCGG	6 cut(s)	36, 93, 107, 165, 173, 228
HhaI	GCGC	1 cut(s)	35
Hin1I	GRCGYC	1 cut(s)	33
Hin1II	CATG	1 cut(s)	344
Hin6I	GCGC	1 cut(s)	33
HinP1I	GCGC	1 cut(s)	33
HindIII	AAGCTT	1 cut(s)	314
HpaII	CCGG	6 cut(s)	36, 93, 107, 165, 173, 228
HphI	GGTGA	2 cut(s)	85, 438
Hpy166II	GTNNAC	1 cut(s)	178
Hpy188I	TCNGA	1 cut(s)	89
Hpy188III	TCNNGA	3 cut(s)	25, 165, 242
Hpy8I	GTNNAC	1 cut(s)	178
HpyCH4V	TGCA	2 cut(s)	100, 236
HpyF10VI	GCNNNNNNNGC	2 cut(s)	233, 395
HpyF3I	CTNAG	2 cut(s)	150, 390
Hsp92I	GRCGYC	1 cut(s)	33
Hsp92II	CATG	1 cut(s)	344
HspAI	GCGC	1 cut(s)	33
KasI	GGCGCC	1 cut(s)	32
Kpn2I	TCCGGA	1 cut(s)	164
KroI	GCCGGC	1 cut(s)	92
KroNI	GCCGGC	1 cut(s)	94
Kzo9I	GATC	1 cut(s)	21
LmnI	GCTCC	5 cut(s)	86, 167, 167, 175, 415
Lsp1109I	GCAGC	2 cut(s)	218, 248
LweI	GCATC	1 cut(s)	283
MaeIII	GTNAC	5 cut(s)	73, 125, 279, 328, 444
MalI	GATC	1 cut(s)	23
MbiI	CCGCTC	1 cut(s)	81
MboI	GATC	1 cut(s)	21
MboII	GAAGA	3 cut(s)	76, 145, 265
MhlI	GDGCHC	2 cut(s)	172, 420
MluCI	AATT	2 cut(s)	101, 369
Mly113I	GGCGCC	1 cut(s)	33
MnlI	CCTC	6 cut(s)	32, 212, 285, 295, 338, 395
MroI	TCCGGA	1 cut(s)	164
MroNI	GCCGGC	1 cut(s)	92
MslI	CAYNNNNRTG	1 cut(s)	345
MspA1I	CMGCKG	1 cut(s)	209
MspI	CCGG	6 cut(s)	36, 93, 107, 165, 173, 228
MwoI	GCNNNNNNNGC	2 cut(s)	233, 395
NaeI	GCCGGC	1 cut(s)	94
NarI	GGCGCC	1 cut(s)	33
NdeII	GATC	1 cut(s)	21
NgoMIV	GCCGGC	1 cut(s)	92
NlaIII	CATG	1 cut(s)	344
NlaIV	GGNNCC	4 cut(s)	34, 58, 163, 417
NmuCI	GTSAC	2 cut(s)	73, 444
PdiI	GCCGGC	1 cut(s)	94
PkrI	GCNGC	5 cut(s)	187, 208, 238, 460, 463
PluTI	GGCGCC	1 cut(s)	36
Psp124BI	GAGCTC	1 cut(s)	172
PspEI	GGTNACC	1 cut(s)	73
PspFI	CCCAGC	1 cut(s)	323
PspN4I	GGNNCC	4 cut(s)	34, 58, 163, 417
PspPI	GGNCC	1 cut(s)	56
PvuII	CAGCTG	1 cut(s)	209
RsaI	GTAC	1 cut(s)	200
RsaNI	GTAC	1 cut(s)	199
RseI	CAYNNNNRTG	1 cut(s)	345
SacI	GAGCTC	1 cut(s)	172
SatI	GCNGC	5 cut(s)	186, 207, 237, 459, 462
Sau3AI	GATC	1 cut(s)	21
Sau96I	GGNCC	1 cut(s)	56
SduI	GDGCHC	2 cut(s)	172, 420
SetI	ASST	7 cut(s)	146, 172, 204, 211, 241, 318, 349
SfaNI	GCATC	1 cut(s)	283
SfoI	GGCGCC	1 cut(s)	34
SmiMI	CAYNNNNRTG	1 cut(s)	345
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
Sse9I	AATT	2 cut(s)	101, 369
SsiI	CCGC	6 cut(s)	12, 71, 79, 186, 458, 461
SspDI	GGCGCC	1 cut(s)	32
SstI	GAGCTC	1 cut(s)	172
StyI	CCWWGG	2 cut(s)	269, 411
TaqI	TCGA	1 cut(s)	431
TasI	AATT	2 cut(s)	101, 369
TauI	GCSGC	3 cut(s)	188, 461, 464
TseFI	GTSAC	2 cut(s)	73, 444
TseI	GCWGC	2 cut(s)	206, 236
Tsp45I	GTSAC	2 cut(s)	73, 444
TspGWI	ACGGA	1 cut(s)	73
XmiI	GTMKAC	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.