Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0003260

Physical Location & Seq

Genomic Coordinates Forward (+)

60650726 .. 60651257

Gene Structure 532 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015014

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGGCGATGGCCCCAAGAAGAAGGCGGTGACTCGTTCTATCAAAGCCGGTCTGCAATTTCTTGTCGGTAGGATTGGCCGCTACTTGAAGAAGGGAAGGTATGCTCAGCCTGTCAGCTCCGGTGCTCCGGTCTACTTGGCCGCGTGCTTGAGTACCTTGCAGCTGAAATTGCACTCATCTCTCTCTCTCTGTCGCTCTTGCATTTCTAAATTTAGAGTTTCGGTTCAATTTTTTCAGGTGCTGGAGTTGTCTGGAAATGCAGCTTGGGACAACAAGAAGAACATGATTATCCCAAGGCATCTGTTATTGGCTGTGAGGAATGACGAATACCTTGGCTTCTTGCTAGGGTTACTAGTGGTCATGGAGTTGCGCTTCAATCAGGTTGAAATCAAGCAGCCTGAGATGATCAGTCACTGCTTTGTTGCGTTTGGCATATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006325 GO:0006342 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0040029 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080090 GO:0097159 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04217 ko05034 ko05322 map04217 map05034 map05322

Pfam Domains

Protein Families

Histone Histone_H2A_C

Protein Analysis

147

Amino Acids

16.29

Weight (kDa)

9.98

Isoelectric Point (pI)

35.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003260)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02560 AT5G02560
fragaria_vesca	FvH4_3g35330 FvH4_6g14320
malus_domestica	MD00G1106100.v1.1 MD03G1098100.v1.1 MD04G1121000.v1.1 MD11G1144600.v1.1 MD12G1138300.v1.1
prunus_persica	Prupe.6G082300_v2.0.a1 Prupe.6G250200_v2.0.a1 Prupe.6G250200_v2.0.a1 Prupe.6G250200_v2.0.a1
pyrus_communis	pycom03g08100 pycom11g09380 pycom12g13230
rosa_chinensis	RchiOBHm_Chr3g0467311 RchiOBHm_Chr5g0063441 RchiOBHm_Chr6g0270671 RchiOBHm_Chr7g0197231
rosa_laevigata	RLG00000015014 RLG00000024511 RLG00000035633
rosa_multiflora	Rmu_sc0000962.1_g000067 Rmu_sc0012351.1_g000002 Rmu_sc0019342.1_g000002
rosa_roxburghii	Rroxscaffold_6G00413740
rosa_rugosa	Rorug03G0086400 Rorug05G0357300
rosa_samantha	Rh3BG156200 Rh3CG155800 Rh3DG157000 Rh5BG431500 Rh5CG454800 Rh5DG445000
rosa_wichuraiana	Rw3G012770 Rw5G039110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	132
AccII	CGCG	1 cut(s)	143
AciI	CCGC	3 cut(s)	26, 79, 141
AcoI	YGGCCR	2 cut(s)	76, 138
AcsI	RAATTY	1 cut(s)	209
AfaI	GTAC	1 cut(s)	154
AgsI	TTSAA	4 cut(s)	88, 227, 376, 386
AhlI	ACTAGT	1 cut(s)	352
AjuI	GAANNNNNNNTTGG	2 cut(s)	247, 279
AluBI	AGCT	3 cut(s)	117, 163, 263
AluI	AGCT	3 cut(s)	117, 163, 263
Alw21I	GWGCWC	1 cut(s)	127
AlwNI	CAGNNNCTG	2 cut(s)	241, 414
AoxI	GGCC	3 cut(s)	10, 76, 138
ApeKI	GCWGC	3 cut(s)	160, 260, 394
ApoI	RAATTY	1 cut(s)	209
AspLEI	GCGC	1 cut(s)	372
AspS9I	GGNCC	1 cut(s)	11
AsuHPI	GGTGA	1 cut(s)	40
Bbv12I	GWGCWC	1 cut(s)	127
BbvI	GCAGC	3 cut(s)	172, 272, 406
BccI	CCATC	1 cut(s)	2
BclI	TGATCA	1 cut(s)	405
BcuI	ACTAGT	1 cut(s)	352
BfaI	CTAG	2 cut(s)	344, 353
BisI	GCNGC	5 cut(s)	79, 141, 161, 261, 395
BlpI	GCTNAGC	1 cut(s)	105
BlsI	GCNGC	5 cut(s)	80, 142, 162, 262, 396
BmgT120I	GGNCC	1 cut(s)	11
BmiI	GGNNCC	1 cut(s)	13
BmsI	GCATC	1 cut(s)	307
BpmI	CTGGAG	1 cut(s)	263
Bpu1102I	GCTNAGC	1 cut(s)	105
BpuEI	CTTGAG	1 cut(s)	169
BsaJI	CCNNGG	2 cut(s)	293, 331
BsaWI	WCCGGW	2 cut(s)	119, 127
Bse118I	RCCGGY	1 cut(s)	47
BseDI	CCNNGG	2 cut(s)	293, 331
BseMII	CTCAG	2 cut(s)	119, 390
BseXI	GCAGC	3 cut(s)	172, 272, 406
Bsh1236I	CGCG	1 cut(s)	143
BshFI	GGCC	3 cut(s)	12, 78, 140
BsiHKAI	GWGCWC	1 cut(s)	127
BsiSI	CCGG	3 cut(s)	48, 120, 128
BslFI	GGGAC	1 cut(s)	281
BsmFI	GGGAC	1 cut(s)	281
BsnI	GGCC	3 cut(s)	12, 78, 140
Bsp1286I	GDGCHC	1 cut(s)	127
Bsp143I	GATC	1 cut(s)	405
Bsp1720I	GCTNAGC	1 cut(s)	105
BspACI	CCGC	3 cut(s)	26, 79, 141
BspANI	GGCC	3 cut(s)	12, 78, 140
BspCNI	CTCAG	2 cut(s)	118, 391
BspFNI	CGCG	1 cut(s)	143
BspLI	GGNNCC	1 cut(s)	13
BsrFI	RCCGGY	1 cut(s)	47
BssAI	RCCGGY	1 cut(s)	47
BssECI	CCNNGG	2 cut(s)	293, 331
BssMI	GATC	1 cut(s)	405
BssT1I	CCWWGG	2 cut(s)	293, 331
BstC8I	GCNNGC	1 cut(s)	145
BstDEI	CTNAG	2 cut(s)	105, 399
BstFNI	CGCG	1 cut(s)	143
BstHHI	GCGC	1 cut(s)	372
BstKTI	GATC	1 cut(s)	408
BstMBI	GATC	1 cut(s)	405
BstMWI	GCNNNNNNNGC	1 cut(s)	169
BstUI	CGCG	1 cut(s)	143
BstV1I	GCAGC	3 cut(s)	172, 272, 406
BsuRI	GGCC	3 cut(s)	12, 78, 140
BtgZI	GCGATG	1 cut(s)	21
BtsI	GCAGTG	1 cut(s)	412
BtsIMutI	CAGTG	1 cut(s)	412
Cac8I	GCNNGC	1 cut(s)	145
CaiI	CAGNNNCTG	2 cut(s)	241, 414
CfoI	GCGC	1 cut(s)	372
Cfr10I	RCCGGY	1 cut(s)	47
Cfr13I	GGNCC	1 cut(s)	11
Csp6I	GTAC	1 cut(s)	153
CviAII	CATG	2 cut(s)	283, 361
CviQI	GTAC	1 cut(s)	153
DdeI	CTNAG	2 cut(s)	105, 399
DpnI	GATC	1 cut(s)	407
DpnII	GATC	1 cut(s)	405
EaeI	YGGCCR	2 cut(s)	76, 138
Eco130I	CCWWGG	2 cut(s)	293, 331
EcoT14I	CCWWGG	2 cut(s)	293, 331
ErhI	CCWWGG	2 cut(s)	293, 331
FaeI	CATG	2 cut(s)	286, 364
FaiI	YATR	5 cut(s)	102, 284, 362, 434, 439
FaqI	GGGAC	1 cut(s)	281
FatI	CATG	2 cut(s)	282, 360
FbaI	TGATCA	1 cut(s)	405
FblI	GTMKAC	1 cut(s)	132
Fnu4HI	GCNGC	5 cut(s)	79, 141, 161, 261, 395
Fsp4HI	GCNGC	5 cut(s)	79, 141, 161, 261, 395
FspBI	CTAG	2 cut(s)	344, 353
GlaI	GCGC	1 cut(s)	371
GluI	GCNGC	5 cut(s)	79, 141, 161, 261, 395
GsuI	CTGGAG	1 cut(s)	263
HaeIII	GGCC	3 cut(s)	12, 78, 140
HapII	CCGG	3 cut(s)	48, 120, 128
HhaI	GCGC	1 cut(s)	372
Hin1II	CATG	2 cut(s)	286, 364
Hin6I	GCGC	1 cut(s)	370
HinP1I	GCGC	1 cut(s)	370
HinfI	GANTC	1 cut(s)	31
HpaII	CCGG	3 cut(s)	48, 120, 128
HphI	GGTGA	1 cut(s)	40
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188III	TCNNGA	1 cut(s)	252
Hpy8I	GTNNAC	1 cut(s)	133
HpyAV	CCTTC	3 cut(s)	16, 85, 90
HpyCH4V	TGCA	5 cut(s)	55, 160, 172, 201, 260
HpyF10VI	GCNNNNNNNGC	1 cut(s)	169
HpyF3I	CTNAG	2 cut(s)	105, 399
Hsp92II	CATG	2 cut(s)	286, 364
HspAI	GCGC	1 cut(s)	370
Ksp22I	TGATCA	1 cut(s)	405
Kzo9I	GATC	1 cut(s)	405
LmnI	GCTCC	2 cut(s)	122, 130
LpnPI	CCDG	9 cut(s)	61, 123, 133, 141, 221, 227, 237, 365, 411
Lsp1109I	GCAGC	3 cut(s)	172, 272, 406
LweI	GCATC	1 cut(s)	307
MaeI	CTAG	2 cut(s)	344, 353
MaeIII	GTNAC	3 cut(s)	28, 348, 410
MalI	GATC	1 cut(s)	407
MboI	GATC	1 cut(s)	405
MboII	GAAGA	3 cut(s)	31, 100, 289
MhlI	GDGCHC	1 cut(s)	127
MluCI	AATT	4 cut(s)	56, 167, 209, 227
MlyI	GAGTC	1 cut(s)	25
MnlI	CCTC	1 cut(s)	309
MspA1I	CMGCKG	1 cut(s)	163
MspI	CCGG	3 cut(s)	48, 120, 128
MvnI	CGCG	1 cut(s)	143
MwoI	GCNNNNNNNGC	1 cut(s)	169
NdeII	GATC	1 cut(s)	405
NlaIII	CATG	2 cut(s)	286, 364
NlaIV	GGNNCC	1 cut(s)	13
NmuCI	GTSAC	2 cut(s)	28, 410
PkrI	GCNGC	5 cut(s)	80, 142, 162, 262, 396
PleI	GAGTC	1 cut(s)	25
PpsI	GAGTC	1 cut(s)	25
PspN4I	GGNNCC	1 cut(s)	13
PspPI	GGNCC	1 cut(s)	11
PstNI	CAGNNNCTG	2 cut(s)	241, 414
PvuII	CAGCTG	1 cut(s)	163
RsaI	GTAC	1 cut(s)	154
RsaNI	GTAC	1 cut(s)	153
SatI	GCNGC	5 cut(s)	79, 141, 161, 261, 395
Sau3AI	GATC	1 cut(s)	405
Sau96I	GGNCC	1 cut(s)	11
SchI	GAGTC	1 cut(s)	25
SduI	GDGCHC	1 cut(s)	127
SetI	ASST	8 cut(s)	101, 119, 158, 165, 240, 265, 333, 384
SfaNI	GCATC	1 cut(s)	307
SmlI	CTYRAG	1 cut(s)	148
SmoI	CTYRAG	1 cut(s)	148
SpeI	ACTAGT	1 cut(s)	352
Sse9I	AATT	4 cut(s)	56, 167, 209, 227
SsiI	CCGC	3 cut(s)	26, 79, 141
SspMI	CTAG	2 cut(s)	344, 353
StyI	CCWWGG	2 cut(s)	293, 331
TasI	AATT	4 cut(s)	56, 167, 209, 227
TauI	GCSGC	2 cut(s)	81, 143
TscAI	CASTG	1 cut(s)	419
TseFI	GTSAC	2 cut(s)	28, 410
TseI	GCWGC	3 cut(s)	160, 260, 394
Tsp45I	GTSAC	2 cut(s)	28, 410
TspRI	CASTG	1 cut(s)	419
XapI	RAATTY	1 cut(s)	209
XmiI	GTMKAC	1 cut(s)	132
XspI	CTAG	2 cut(s)	344, 353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.