Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003260

Physical Location & Seq

Genomic Coordinates Forward (+)

575225 .. 577216

Gene Structure 1992 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G02560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGATTCCGGAACCAAAGTGAAGAAAGGAGCCGCTGGAAGAAGAAGTGGTGGAGGTCCTAAGAAGAAACCGGTTTCCCGTTCGGTTAAATCCGGTCTACAGTTTCCTGTCGGTAGGATCGGTCGGTATCTTAAGAAAGGTCGTTATTCGAAGCGTGTCGGAACCGGAGCTCCGGTCTATCTCGCCGCCGTCCTCGAGTATCTTGCTGCTGAGGTTCTCGAGCTTGCTGGTAACGCTGCAAGAGATAACAAAAAGAACCGTATTATACCACGCCATGTTCTATTAGCGGTGAGGAACGACGAGGAGCTAGGGACACTACTCAAAGGCGTAACCATTGCACACGGCGGTGTTTTACCAAACATAAACCCAATACTCCTCCCAAAGAAGTCTGAGAAAGCAGCTTCAACTACAAAAACACCCAAATCACCATCAAAGGCAACCAAATCCCCTAAGAAATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006325 GO:0006342 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0040029 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080090 GO:0097159 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04217 ko05034 ko05322 map04217 map05034 map05322

Pfam Domains

Protein Families

Histone Histone_H2A_C

Protein Analysis

153

Amino Acids

16.22

Weight (kDa)

10.79

Isoelectric Point (pI)

41.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	21 - 98	2.5e-12	Core histone H2A/H2B/H3/H4 domain
Histone_H2A_C	PF16211	101 - 134	4.3e-18	C-terminus of histone H2A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003260)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02560 AT5G02560
fragaria_vesca	FvH4_3g35330 FvH4_6g14320
malus_domestica	MD00G1106100.v1.1 MD03G1098100.v1.1 MD04G1121000.v1.1 MD11G1144600.v1.1 MD12G1138300.v1.1
prunus_persica	Prupe.6G082300_v2.0.a1 Prupe.6G250200_v2.0.a1 Prupe.6G250200_v2.0.a1 Prupe.6G250200_v2.0.a1
pyrus_communis	pycom03g08100 pycom11g09380 pycom12g13230
rosa_chinensis	RchiOBHm_Chr3g0467311 RchiOBHm_Chr5g0063441 RchiOBHm_Chr6g0270671 RchiOBHm_Chr7g0197231
rosa_laevigata	RLG00000015014 RLG00000024511 RLG00000035633
rosa_multiflora	Rmu_sc0000962.1_g000067 Rmu_sc0012351.1_g000002 Rmu_sc0019342.1_g000002
rosa_roxburghii	Rroxscaffold_6G00413740
rosa_rugosa	Rorug03G0086400 Rorug05G0357300
rosa_samantha	Rh3BG156200 Rh3CG155800 Rh3DG157000 Rh5BG431500 Rh5CG454800 Rh5DG445000
rosa_wichuraiana	Rw3G012770 Rw5G039110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	97
AccIII	TCCGGA	1 cut(s)	8
AciI	CCGC	4 cut(s)	33, 186, 287, 345
AclWI	GGATC	1 cut(s)	125
AflII	CTTAAG	1 cut(s)	131
AgeI	ACCGGT	1 cut(s)	70
AgsI	TTSAA	1 cut(s)	405
AleI	CACNNNNGTG	1 cut(s)	345
AloI	GAACNNNNNNTCC	2 cut(s)	154, 186
AluBI	AGCT	4 cut(s)	170, 223, 307, 401
AluI	AGCT	4 cut(s)	170, 223, 307, 401
Alw21I	GWGCWC	1 cut(s)	172
AlwI	GGATC	1 cut(s)	125
Ama87I	CYCGRG	2 cut(s)	194, 218
Aor13HI	TCCGGA	1 cut(s)	8
ApeKI	GCWGC	3 cut(s)	206, 236, 398
AsiGI	ACCGGT	1 cut(s)	70
AspS9I	GGNCC	1 cut(s)	56
AsuHPI	GGTGA	2 cut(s)	301, 417
AsuII	TTCGAA	1 cut(s)	149
AvaI	CYCGRG	2 cut(s)	194, 218
AvaII	GGWCC	1 cut(s)	56
BanII	GRGCYC	1 cut(s)	172
Bbv12I	GWGCWC	1 cut(s)	172
BbvCI	CCTCAGC	1 cut(s)	210
BbvI	GCAGC	3 cut(s)	193, 223, 410
BccI	CCATC	1 cut(s)	436
BceAI	ACGGC	2 cut(s)	173, 358
BcgI	CGANNNNNNTGC	2 cut(s)	185, 219
BfaI	CTAG	1 cut(s)	308
BfmI	CTRYAG	1 cut(s)	98
BfrI	CTTAAG	1 cut(s)	131
BisI	GCNGC	5 cut(s)	33, 186, 207, 237, 399
BlsI	GCNGC	5 cut(s)	34, 187, 208, 238, 400
Bme18I	GGWCC	1 cut(s)	56
BmeT110I	CYCGRG	2 cut(s)	194, 218
BmgT120I	GGNCC	1 cut(s)	56
BmiI	GGNNCC	3 cut(s)	13, 31, 163
Bpu10I	CCTNAGC	1 cut(s)	210
Bpu14I	TTCGAA	1 cut(s)	149
BsaWI	WCCGGW	5 cut(s)	8, 70, 92, 164, 172
BsaXI	ACNNNNNCTCC	4 cut(s)	154, 159, 184, 189
Bse118I	RCCGGY	1 cut(s)	70
Bse3DI	GCAATG	1 cut(s)	333
BseAI	TCCGGA	1 cut(s)	8
BseMI	GCAATG	1 cut(s)	333
BseMII	CTCAG	2 cut(s)	201, 381
BseRI	GAGGAG	2 cut(s)	317, 365
BseXI	GCAGC	3 cut(s)	193, 223, 410
Bsh1285I	CGRYCG	1 cut(s)	124
BshTI	ACCGGT	1 cut(s)	70
BsiEI	CGRYCG	1 cut(s)	124
BsiHKAI	GWGCWC	1 cut(s)	172
BsiHKCI	CYCGRG	2 cut(s)	194, 218
BsiSI	CCGG	5 cut(s)	9, 71, 93, 165, 173
BslFI	GGGAC	1 cut(s)	325
BsmFI	GGGAC	1 cut(s)	325
BsoBI	CYCGRG	2 cut(s)	194, 218
Bsp119I	TTCGAA	1 cut(s)	149
Bsp1286I	GDGCHC	1 cut(s)	172
Bsp13I	TCCGGA	1 cut(s)	8
Bsp143I	GATC	1 cut(s)	117
BspACI	CCGC	4 cut(s)	33, 186, 287, 345
BspCNI	CTCAG	2 cut(s)	202, 382
BspEI	TCCGGA	1 cut(s)	8
BspLI	GGNNCC	3 cut(s)	13, 31, 163
BspPI	GGATC	1 cut(s)	125
BspT104I	TTCGAA	1 cut(s)	149
BspTI	CTTAAG	1 cut(s)	131
BsrDI	GCAATG	1 cut(s)	333
BsrFI	RCCGGY	1 cut(s)	70
BssAI	RCCGGY	1 cut(s)	70
BssMI	GATC	1 cut(s)	117
Bst4CI	ACNGT	2 cut(s)	102, 260
BstAFI	CTTAAG	1 cut(s)	131
BstBI	TTCGAA	1 cut(s)	149
BstC8I	GCNNGC	1 cut(s)	225
BstDEI	CTNAG	5 cut(s)	60, 210, 390, 450, 459
BstKTI	GATC	1 cut(s)	120
BstMBI	GATC	1 cut(s)	117
BstMCI	CGRYCG	1 cut(s)	124
BstMWI	GCNNNNNNNGC	1 cut(s)	233
BstSFI	CTRYAG	1 cut(s)	98
BstV1I	GCAGC	3 cut(s)	193, 223, 410
Cac8I	GCNNGC	1 cut(s)	225
Cfr10I	RCCGGY	1 cut(s)	70
Cfr13I	GGNCC	1 cut(s)	56
CspAI	ACCGGT	1 cut(s)	70
CviAII	CATG	1 cut(s)	275
CviJI	RGCY	5 cut(s)	32, 170, 223, 307, 401
CviKI_1	RGCY	5 cut(s)	32, 170, 223, 307, 401
DdeI	CTNAG	5 cut(s)	60, 210, 390, 450, 459
DpnI	GATC	1 cut(s)	119
DpnII	GATC	1 cut(s)	117
Ecl136II	GAGCTC	1 cut(s)	170
Eco24I	GRGCYC	1 cut(s)	172
Eco47I	GGWCC	1 cut(s)	56
Eco53kI	GAGCTC	1 cut(s)	170
Eco88I	CYCGRG	2 cut(s)	194, 218
EcoICRI	GAGCTC	1 cut(s)	170
EcoO109I	RGGNCCY	1 cut(s)	56
EcoT38I	GRGCYC	1 cut(s)	172
FaeI	CATG	1 cut(s)	278
FaiI	YATR	3 cut(s)	266, 276, 362
FaqI	GGGAC	1 cut(s)	325
FatI	CATG	1 cut(s)	274
FblI	GTMKAC	1 cut(s)	97
Fnu4HI	GCNGC	5 cut(s)	33, 186, 207, 237, 399
FriOI	GRGCYC	1 cut(s)	172
Fsp4HI	GCNGC	5 cut(s)	33, 186, 207, 237, 399
FspBI	CTAG	1 cut(s)	308
GluI	GCNGC	5 cut(s)	33, 186, 207, 237, 399
HapII	CCGG	5 cut(s)	9, 71, 93, 165, 173
Hin1II	CATG	1 cut(s)	278
HinfI	GANTC	1 cut(s)	5
HpaII	CCGG	5 cut(s)	9, 71, 93, 165, 173
HphI	GGTGA	2 cut(s)	301, 417
Hpy166II	GTNNAC	1 cut(s)	98
Hpy188I	TCNGA	2 cut(s)	161, 391
Hpy188III	TCNNGA	2 cut(s)	9, 218
Hpy8I	GTNNAC	1 cut(s)	98
Hpy99I	CGWCG	1 cut(s)	302
HpyCH4III	ACNGT	2 cut(s)	102, 260
HpyCH4V	TGCA	2 cut(s)	239, 338
HpyF10VI	GCNNNNNNNGC	1 cut(s)	233
HpyF3I	CTNAG	5 cut(s)	60, 210, 390, 450, 459
Hsp92II	CATG	1 cut(s)	278
Kpn2I	TCCGGA	1 cut(s)	8
Kzo9I	GATC	1 cut(s)	117
LmnI	GCTCC	4 cut(s)	29, 167, 175, 304
LpnPI	CCDG	8 cut(s)	21, 22, 84, 106, 120, 178, 186, 213
Lsp1109I	GCAGC	3 cut(s)	193, 223, 410
MaeI	CTAG	1 cut(s)	308
MaeIII	GTNAC	2 cut(s)	230, 328
MalI	GATC	1 cut(s)	119
MboI	GATC	1 cut(s)	117
MboII	GAAGA	4 cut(s)	34, 51, 54, 76
MhlI	GDGCHC	1 cut(s)	172
MmeI	TCCRAC	1 cut(s)	139
MnlI	CCTC	6 cut(s)	47, 203, 205, 285, 295, 386
MroI	TCCGGA	1 cut(s)	8
MseI	TTAA	2 cut(s)	87, 132
MslI	CAYNNNNRTG	1 cut(s)	345
MspA1I	CMGCKG	1 cut(s)	35
MspCI	CTTAAG	1 cut(s)	131
MspI	CCGG	5 cut(s)	9, 71, 93, 165, 173
MwoI	GCNNNNNNNGC	1 cut(s)	233
NdeII	GATC	1 cut(s)	117
NlaIII	CATG	1 cut(s)	278
NlaIV	GGNNCC	3 cut(s)	13, 31, 163
NspV	TTCGAA	1 cut(s)	149
OliI	CACNNNNGTG	1 cut(s)	345
PaeR7I	CTCGAG	2 cut(s)	194, 218
PfeI	GAWTC	1 cut(s)	5
PinAI	ACCGGT	1 cut(s)	70
PkrI	GCNGC	5 cut(s)	34, 187, 208, 238, 400
PpuMI	RGGWCCY	1 cut(s)	56
Psp124BI	GAGCTC	1 cut(s)	172
Psp5II	RGGWCCY	1 cut(s)	56
PspN4I	GGNNCC	3 cut(s)	13, 31, 163
PspPI	GGNCC	1 cut(s)	56
PspPPI	RGGWCCY	1 cut(s)	56
PspXI	VCTCGAGB	1 cut(s)	194
RseI	CAYNNNNRTG	1 cut(s)	345
SacI	GAGCTC	1 cut(s)	172
SaqAI	TTAA	2 cut(s)	87, 132
SatI	GCNGC	5 cut(s)	33, 186, 207, 237, 399
Sau3AI	GATC	1 cut(s)	117
Sau96I	GGNCC	1 cut(s)	56
SduI	GDGCHC	1 cut(s)	172
SetI	ASST	7 cut(s)	58, 142, 172, 216, 225, 309, 403
SfcI	CTRYAG	1 cut(s)	98
Sfr274I	CTCGAG	2 cut(s)	194, 218
SfuI	TTCGAA	1 cut(s)	149
SinI	GGWCC	1 cut(s)	56
SlaI	CTCGAG	2 cut(s)	194, 218
SmiMI	CAYNNNNRTG	1 cut(s)	345
SmlI	CTYRAG	3 cut(s)	131, 194, 218
SmoI	CTYRAG	3 cut(s)	131, 194, 218
SsiI	CCGC	4 cut(s)	33, 186, 287, 345
SspMI	CTAG	1 cut(s)	308
SstI	GAGCTC	1 cut(s)	172
TaaI	ACNGT	2 cut(s)	102, 260
TaqI	TCGA	3 cut(s)	149, 195, 219
TaqII	GACCGA	1 cut(s)	110
TauI	GCSGC	2 cut(s)	35, 188
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	2 cut(s)	87, 132
Tru9I	TTAA	2 cut(s)	87, 132
TseI	GCWGC	3 cut(s)	206, 236, 398
Vha464I	CTTAAG	1 cut(s)	131
VpaK11BI	GGWCC	1 cut(s)	56
XhoI	CTCGAG	2 cut(s)	194, 218
XmiI	GTMKAC	1 cut(s)	97
XspI	CTAG	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.