Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0036527.1

Orthogroup ID

OG0020136

Physical Location & Seq

Genomic Coordinates Forward (+)

955 .. 1835

Gene Structure 881 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0036527.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

atggggctgacgttcacgaagctcttcagccggcttttcgccaagaaagagatgcgaattctgatggtcggtctcgacgccgccggtaagaccaccatcttgtacaagctcaagctcggagaaatcgtcaccaccatccctaccattggatttaatgtggagactgtggaatacaagaacatcagcttcactgtgtgggatgtagggggtcaggacaagatccgtccattgtggaggcactacttccagaacactcaaggtcttatt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04072 ko04144 ko05110 ko05134 map04072 map04144 map05110 map05134

Pfam Domains

Protein Families

Arf

Protein Analysis

89

Amino Acids

10.21

Weight (kDa)

9.75

Isoelectric Point (pI)

26.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020136)

Species	Orthologous Gene IDs
malus_domestica	MD09G1030400.v1.1
prunus_persica	Prupe.3G287000_v2.0.a1
pyrus_communis	pycom17g02980
rosa_multiflora	Rmu_sc0036527.1_g000002
rosa_samantha	Rh4AG406000 Rh4BG417000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	81
AclWI	GGATC	1 cut(s)	214
AcsI	RAATTY	1 cut(s)	57
AcuI	CTGAAG	1 cut(s)	10
AcyI	GRCGYC	1 cut(s)	78
AdeI	CACNNNGTG	1 cut(s)	195
AfaI	GTAC	1 cut(s)	104
AfiI	CCNNNNNNNGG	1 cut(s)	146
AluBI	AGCT	4 cut(s)	22, 109, 115, 186
AluI	AGCT	4 cut(s)	22, 109, 115, 186
Alw26I	GTCTC	2 cut(s)	77, 155
AlwI	GGATC	1 cut(s)	214
ApoI	RAATTY	1 cut(s)	57
Asp700I	GAANNNNTTC	1 cut(s)	23
AsuHPI	GGTGA	1 cut(s)	121
BccI	CCATC	3 cut(s)	58, 104, 143
BcoDI	GTCTC	2 cut(s)	77, 155
BisI	GCNGC	1 cut(s)	81
BlsI	GCNGC	1 cut(s)	82
BmsI	GCATC	1 cut(s)	42
BpuEI	CTTGAG	2 cut(s)	95, 240
BsaHI	GRCGYC	1 cut(s)	78
BsaI	GGTCTC	1 cut(s)	77
BsaXI	ACNNNNNCTCC	2 cut(s)	111, 141
Bsc4I	CCNNNNNNNGG	1 cut(s)	146
Bse118I	RCCGGY	2 cut(s)	30, 83
BseGI	GGATG	2 cut(s)	135, 205
BseLI	CCNNNNNNNGG	1 cut(s)	146
BsiSI	CCGG	2 cut(s)	31, 84
BslI	CCNNNNNNNGG	1 cut(s)	146
BsmAI	GTCTC	2 cut(s)	77, 155
Bso31I	GGTCTC	1 cut(s)	77
Bsp1407I	TGTACA	1 cut(s)	102
Bsp143I	GATC	1 cut(s)	219
BspACI	CCGC	1 cut(s)	81
BspPI	GGATC	1 cut(s)	214
BspQI	GCTCTTC	1 cut(s)	29
BspTNI	GGTCTC	1 cut(s)	77
BsrFI	RCCGGY	2 cut(s)	30, 83
BsrGI	TGTACA	1 cut(s)	102
BssAI	RCCGGY	2 cut(s)	30, 83
BssMI	GATC	1 cut(s)	219
BssNI	GRCGYC	1 cut(s)	78
Bst4CI	ACNGT	2 cut(s)	166, 193
Bst6I	CTCTTC	1 cut(s)	29
BstACI	GRCGYC	1 cut(s)	78
BstAUI	TGTACA	1 cut(s)	102
BstC8I	GCNNGC	1 cut(s)	32
BstF5I	GGATG	2 cut(s)	135, 205
BstKTI	GATC	1 cut(s)	222
BstMAI	GTCTC	2 cut(s)	77, 155
BstMBI	GATC	1 cut(s)	219
BstX2I	RGATCY	1 cut(s)	219
BstYI	RGATCY	1 cut(s)	219
BtsCI	GGATG	2 cut(s)	135, 205
BtsIMutI	CAGTG	1 cut(s)	189
Cac8I	GCNNGC	1 cut(s)	32
Cfr10I	RCCGGY	2 cut(s)	30, 83
CseI	GACGC	1 cut(s)	86
Csp6I	GTAC	1 cut(s)	103
CviJI	RGCY	7 cut(s)	7, 22, 30, 34, 109, 115, 186
CviKI_1	RGCY	7 cut(s)	7, 22, 30, 34, 109, 115, 186
CviQI	GTAC	1 cut(s)	103
DpnI	GATC	1 cut(s)	221
DpnII	GATC	1 cut(s)	219
DraIII	CACNNNGTG	1 cut(s)	195
Eam1104I	CTCTTC	1 cut(s)	29
EarI	CTCTTC	1 cut(s)	29
Eco31I	GGTCTC	1 cut(s)	77
Eco57I	CTGAAG	1 cut(s)	10
EcoRI	GAATTC	1 cut(s)	57
Fnu4HI	GCNGC	1 cut(s)	81
FokI	GGATG	2 cut(s)	122, 212
Fsp4HI	GCNGC	1 cut(s)	81
GluI	GCNGC	1 cut(s)	81
HapII	CCGG	2 cut(s)	31, 84
HgaI	GACGC	1 cut(s)	86
Hin1I	GRCGYC	1 cut(s)	78
HpaII	CCGG	2 cut(s)	31, 84
HphI	GGTGA	1 cut(s)	121
Hpy166II	GTNNAC	1 cut(s)	15
Hpy188I	TCNGA	2 cut(s)	63, 119
Hpy188III	TCNNGA	4 cut(s)	16, 74, 212, 247
Hpy8I	GTNNAC	1 cut(s)	15
Hpy99I	CGWCG	1 cut(s)	80
HpyCH4III	ACNGT	2 cut(s)	166, 193
HpyCH4IV	ACGT	1 cut(s)	11
HpySE526I	ACGT	1 cut(s)	11
Hsp92I	GRCGYC	1 cut(s)	78
KroI	GCCGGC	1 cut(s)	30
KroNI	GCCGGC	1 cut(s)	32
Kzo9I	GATC	1 cut(s)	219
LguI	GCTCTTC	1 cut(s)	29
LpnPI	CCDG	4 cut(s)	44, 97, 197, 260
LweI	GCATC	1 cut(s)	42
MaeII	ACGT	1 cut(s)	11
MaeIII	GTNAC	1 cut(s)	127
MalI	GATC	1 cut(s)	221
MboI	GATC	1 cut(s)	219
MboII	GAAGA	1 cut(s)	16
MflI	RGATCY	1 cut(s)	219
MluCI	AATT	1 cut(s)	57
MnlI	CCTC	1 cut(s)	228
MroNI	GCCGGC	1 cut(s)	30
MroXI	GAANNNNTTC	1 cut(s)	23
MseI	TTAA	1 cut(s)	153
MspI	CCGG	2 cut(s)	31, 84
NaeI	GCCGGC	1 cut(s)	32
NdeII	GATC	1 cut(s)	219
NgoMIV	GCCGGC	1 cut(s)	30
NmuCI	GTSAC	1 cut(s)	127
PciSI	GCTCTTC	1 cut(s)	29
PcsI	WCGNNNNNNNCGW	1 cut(s)	123
PdiI	GCCGGC	1 cut(s)	32
PdmI	GAANNNNTTC	1 cut(s)	23
PkrI	GCNGC	1 cut(s)	82
PsuI	RGATCY	1 cut(s)	219
RsaI	GTAC	1 cut(s)	104
RsaNI	GTAC	1 cut(s)	103
SapI	GCTCTTC	1 cut(s)	29
SaqAI	TTAA	1 cut(s)	153
SatI	GCNGC	1 cut(s)	81
Sau3AI	GATC	1 cut(s)	219
SetI	ASST	6 cut(s)	14, 24, 111, 117, 188, 262
SfaNI	GCATC	1 cut(s)	42
SmlI	CTYRAG	2 cut(s)	110, 255
SmoI	CTYRAG	2 cut(s)	110, 255
Sse9I	AATT	1 cut(s)	57
SsiI	CCGC	1 cut(s)	81
TaaI	ACNGT	2 cut(s)	166, 193
TaiI	ACGT	1 cut(s)	14
TaqI	TCGA	1 cut(s)	75
TaqII	GACCGA	1 cut(s)	59
TasI	AATT	1 cut(s)	57
TatI	WGTACW	1 cut(s)	102
TauI	GCSGC	1 cut(s)	83
Tru1I	TTAA	1 cut(s)	153
Tru9I	TTAA	1 cut(s)	153
TscAI	CASTG	1 cut(s)	196
TseFI	GTSAC	1 cut(s)	127
Tsp45I	GTSAC	1 cut(s)	127
TspGWI	ACGGA	1 cut(s)	212
TspRI	CASTG	1 cut(s)	196
XapI	RAATTY	1 cut(s)	57
XmnI	GAANNNNTTC	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.