Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0041817.1

Orthogroup ID

OG0008953

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1634

Gene Structure 1634 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0041817.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1048 bp

atgaagttggcaagcactgattttctacttgctttttcttcttatgaacctctgaaggtgtttgtgagagactttgtccccagtgcattggcttttctgatgaatggtgaacctgaaattgttaaaaactttatcttgaagactctccgtctgcagtcatgggagaaaaagattgatagattccagctaggagaaggagtaatgccagctagtttcaaagtactccatgatccagtcaggaacactgagactttaatggcagattttggtgagagtgctataggaagagttgctccggttgattctggattttggtggatcatattgcttcgcgcatacacaaaatctactggagacacatcattggctgaacggcctgaatgccagaagggtatgcggcttattctaagtttatgtctttcggaagggtttgacacatttccaacccttctttgtgccgacggatgctgcatgattgatcgtagaatgggtgtttatggatatcccattgaaattcaggctcttttcttcatggctttaagatgtgctttgcttttacttaacaaagatgatgaggggaaggagttcattgagcgaatagtaaaacgccttcatgccttgagctatcacatgagaagttacttttggcttgactttaagcagttaaatgatatatatcgatataaaactgaagaatactcacatacagccgtcaacaagttcaatgtgataccagattctcttccggactgggtctttgattttatgccaacacacggtggttactttattgggaatgtgagtcctgcaagaatggatttccgctggttttgcttgggtaattgtatagcgattctttcatccttggcaacccctgaacaatccatggcaatcatggatctcatagagtcacgatgggaggagttggcaggagaaatgccattaaaggtttgttatccagccatagacagtcatgaatggaggattgaaacaggaagtgacccaaaaaatactagatggagctaccacaatggaggttcttggccag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_100

Protein Analysis

349

Amino Acids

40.13

Weight (kDa)

5.6

Isoelectric Point (pI)

49.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008953)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34860 AT4G34860 AT4G34860
fragaria_vesca	FvH4_2g02090
malus_domestica	MD05G1115200.v1.1
prunus_persica	Prupe.2G075000_v2.0.a1 Prupe.2G075000_v2.0.a1 Prupe.2G075000_v2.0.a1 Prupe.2G075000_v2.0.a1 Prupe.8G159800_v2.0.a1 Prupe.8G159800_v2.0.a1 Prupe.8G159800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0245601
rosa_laevigata	RLG00000015301
rosa_multiflora	Rmu_sc0001341.1_g000005 Rmu_sc0041817.1_g000001
rosa_roxburghii	Rroxscaffold_7G00215240
rosa_rugosa	Rorug05G0514700.1 Rorug05G0514800.1 Rorug05G0514900.1
rosa_samantha	Rh6DG025800
rosa_wichuraiana	Rw6G002530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	333
AccIII	TCCGGA	1 cut(s)	745
AciI	CCGC	2 cut(s)	397, 823
AclWI	GGATC	3 cut(s)	224, 326, 906
AcoI	YGGCCR	1 cut(s)	1043
AcsI	RAATTY	1 cut(s)	513
AcuI	CTGAAG	2 cut(s)	74, 711
AdeI	CACNNNGTG	1 cut(s)	779
AfaI	GTAC	1 cut(s)	222
AfiI	CCNNNNNNNGG	1 cut(s)	776
AgsI	TTSAA	5 cut(s)	139, 217, 512, 724, 989
AhdI	GACNNNNNGTC	1 cut(s)	147
AjuI	GAANNNNNNNTTGG	2 cut(s)	628, 660
AluBI	AGCT	4 cut(s)	187, 209, 624, 1023
AluI	AGCT	4 cut(s)	187, 209, 624, 1023
Alw26I	GTCTC	3 cut(s)	63, 242, 348
AlwI	GGATC	3 cut(s)	224, 326, 906
Aor13HI	TCCGGA	1 cut(s)	745
AoxI	GGCC	2 cut(s)	374, 1043
ApeKI	GCWGC	1 cut(s)	468
ApoI	RAATTY	1 cut(s)	513
ArsI	GACNNNNNNTTYG	2 cut(s)	740, 772
Asp700I	GAANNNNTTC	1 cut(s)	584
AspLEI	GCGC	1 cut(s)	335
AsuHPI	GGTGA	2 cut(s)	119, 281
BalI	TGGCCA	1 cut(s)	1045
BarI	GAAGNNNNNNTAC	2 cut(s)	594, 626
BbsI	GAAGAC	1 cut(s)	146
BbvI	GCAGC	1 cut(s)	455
BccI	CCATC	2 cut(s)	909, 1011
BceAI	ACGGC	2 cut(s)	389, 695
BcoDI	GTCTC	3 cut(s)	63, 242, 348
BfaI	CTAG	3 cut(s)	188, 210, 1014
BfmI	CTRYAG	2 cut(s)	152, 279
BisI	GCNGC	2 cut(s)	398, 469
BlsI	GCNGC	2 cut(s)	399, 470
BmcAI	AGTACT	1 cut(s)	222
BmeRI	GACNNNNNGTC	1 cut(s)	147
BmrI	ACTGGG	2 cut(s)	75, 760
BmsI	GCATC	1 cut(s)	455
BmuI	ACTGGG	2 cut(s)	75, 760
BpiI	GAAGAC	1 cut(s)	146
BpmI	CTGGAG	1 cut(s)	372
BpuEI	CTTGAG	1 cut(s)	640
Bsa29I	ATCGAT	1 cut(s)	679
BsaBI	GATNNNNATC	1 cut(s)	675
BsaJI	CCNNGG	2 cut(s)	864, 885
BsaWI	WCCGGW	2 cut(s)	295, 745
BsaXI	ACNNNNNCTCC	2 cut(s)	183, 213
Bsc4I	CCNNNNNNNGG	1 cut(s)	776
Bse1I	ACTGG	4 cut(s)	81, 233, 355, 755
Bse8I	GATNNNNATC	1 cut(s)	675
BseAI	TCCGGA	1 cut(s)	745
BseCI	ATCGAT	1 cut(s)	679
BseDI	CCNNGG	2 cut(s)	864, 885
BseGI	GGATG	2 cut(s)	470, 860
BseJI	GATNNNNATC	1 cut(s)	675
BseLI	CCNNNNNNNGG	1 cut(s)	776
BseMII	CTCAG	1 cut(s)	237
BseNI	ACTGG	4 cut(s)	81, 233, 355, 755
BseRI	GAGGAG	1 cut(s)	935
BseXI	GCAGC	1 cut(s)	455
Bsh1236I	CGCG	1 cut(s)	333
BshFI	GGCC	2 cut(s)	376, 1045
BshVI	ATCGAT	1 cut(s)	679
BsiSI	CCGG	2 cut(s)	296, 746
BslFI	GGGAC	1 cut(s)	62
BslI	CCNNNNNNNGG	1 cut(s)	776
BsmAI	GTCTC	3 cut(s)	63, 242, 348
BsmFI	GGGAC	1 cut(s)	62
BsmI	GAATGC	1 cut(s)	386
BsnI	GGCC	2 cut(s)	376, 1045
Bsp13I	TCCGGA	1 cut(s)	745
Bsp143I	GATC	4 cut(s)	229, 318, 478, 898
Bsp19I	CCATGG	1 cut(s)	885
BspACI	CCGC	2 cut(s)	397, 823
BspANI	GGCC	2 cut(s)	376, 1045
BspCNI	CTCAG	1 cut(s)	238
BspDI	ATCGAT	1 cut(s)	679
BspEI	TCCGGA	1 cut(s)	745
BspFNI	CGCG	1 cut(s)	333
BspHI	TCATGA	1 cut(s)	973
BspMAI	CTGCAG	1 cut(s)	156
BspPI	GGATC	3 cut(s)	224, 326, 906
BsrI	ACTGG	4 cut(s)	81, 233, 355, 755
BssECI	CCNNGG	2 cut(s)	864, 885
BssMI	GATC	4 cut(s)	229, 318, 478, 898
BssT1I	CCWWGG	2 cut(s)	864, 885
Bst4CI	ACNGT	2 cut(s)	779, 971
Bst6I	CTCTTC	2 cut(s)	280, 747
BstC8I	GCNNGC	2 cut(s)	13, 207
BstDEI	CTNAG	2 cut(s)	246, 407
BstDSI	CCRYGG	1 cut(s)	885
BstF5I	GGATG	2 cut(s)	470, 860
BstFNI	CGCG	1 cut(s)	333
BstHHI	GCGC	1 cut(s)	335
BstKTI	GATC	4 cut(s)	232, 321, 481, 901
BstMAI	GTCTC	3 cut(s)	63, 242, 348
BstMBI	GATC	4 cut(s)	229, 318, 478, 898
BstMWI	GCNNNNNNNGC	1 cut(s)	831
BstSFI	CTRYAG	2 cut(s)	152, 279
BstUI	CGCG	1 cut(s)	333
BstV1I	GCAGC	1 cut(s)	455
BstV2I	GAAGAC	1 cut(s)	146
BstX2I	RGATCY	1 cut(s)	898
BstXI	CCANNNNNNTGG	1 cut(s)	88
BstYI	RGATCY	1 cut(s)	898
Bsu15I	ATCGAT	1 cut(s)	679
BsuRI	GGCC	2 cut(s)	376, 1045
BsuTUI	ATCGAT	1 cut(s)	679
BtgI	CCRYGG	1 cut(s)	885
BtsCI	GGATG	2 cut(s)	470, 860
BtsIMutI	CAGTG	3 cut(s)	15, 88, 243
Cac8I	GCNNGC	2 cut(s)	13, 207
CciI	TCATGA	1 cut(s)	973
CfoI	GCGC	1 cut(s)	335
ClaI	ATCGAT	1 cut(s)	679
Csp6I	GTAC	1 cut(s)	221
CviAII	CATG	9 cut(s)	159, 227, 472, 532, 614, 631, 886, 895, 974
CviQI	GTAC	1 cut(s)	221
DdeI	CTNAG	2 cut(s)	246, 407
DpnI	GATC	4 cut(s)	231, 320, 480, 900
DpnII	GATC	4 cut(s)	229, 318, 478, 898
DraIII	CACNNNGTG	1 cut(s)	779
DriI	GACNNNNNGTC	1 cut(s)	147
EaeI	YGGCCR	1 cut(s)	1043
Eam1104I	CTCTTC	2 cut(s)	280, 747
Eam1105I	GACNNNNNGTC	1 cut(s)	147
EarI	CTCTTC	2 cut(s)	280, 747
Eco130I	CCWWGG	2 cut(s)	864, 885
Eco32I	GATATC	1 cut(s)	503
Eco57I	CTGAAG	2 cut(s)	74, 711
EcoRV	GATATC	1 cut(s)	503
EcoT14I	CCWWGG	2 cut(s)	864, 885
ErhI	CCWWGG	2 cut(s)	864, 885
FaeI	CATG	9 cut(s)	162, 230, 475, 535, 617, 634, 889, 898, 977
FalI	AAGNNNNNCTT	2 cut(s)	532, 564
FaqI	GGGAC	1 cut(s)	62
FatI	CATG	9 cut(s)	158, 226, 471, 531, 613, 630, 885, 894, 973
Fnu4HI	GCNGC	2 cut(s)	398, 469
FokI	GGATG	2 cut(s)	477, 847
Fsp4HI	GCNGC	2 cut(s)	398, 469
FspBI	CTAG	3 cut(s)	188, 210, 1014
GlaI	GCGC	1 cut(s)	334
GluI	GCNGC	2 cut(s)	398, 469
GsuI	CTGGAG	1 cut(s)	372
HaeIII	GGCC	2 cut(s)	376, 1045
HapII	CCGG	2 cut(s)	296, 746
HhaI	GCGC	1 cut(s)	335
Hin1II	CATG	9 cut(s)	162, 230, 475, 535, 617, 634, 889, 898, 977
Hin6I	GCGC	1 cut(s)	333
HinP1I	GCGC	1 cut(s)	333
HincII	GTYRAC	1 cut(s)	715
HindII	GTYRAC	1 cut(s)	715
HinfI	GANTC	7 cut(s)	142, 180, 302, 737, 802, 853, 908
HpaII	CCGG	2 cut(s)	296, 746
HphI	GGTGA	2 cut(s)	119, 281
Hpy166II	GTNNAC	2 cut(s)	110, 715
Hpy188I	TCNGA	3 cut(s)	54, 99, 424
Hpy188III	TCNNGA	6 cut(s)	136, 238, 306, 746, 912, 974
Hpy8I	GTNNAC	2 cut(s)	110, 715
Hpy99I	CGWCG	1 cut(s)	464
HpyAV	CCTTC	7 cut(s)	49, 188, 382, 419, 458, 574, 620
HpyCH4III	ACNGT	2 cut(s)	779, 971
HpyCH4V	TGCA	4 cut(s)	86, 154, 471, 809
HpyF10VI	GCNNNNNNNGC	1 cut(s)	831
HpyF3I	CTNAG	2 cut(s)	246, 407
Hsp92II	CATG	9 cut(s)	162, 230, 475, 535, 617, 634, 889, 898, 977
HspAI	GCGC	1 cut(s)	333
Kpn2I	TCCGGA	1 cut(s)	745
Kzo9I	GATC	4 cut(s)	229, 318, 478, 898
LmnI	GCTCC	2 cut(s)	298, 1020
Lsp1109I	GCAGC	1 cut(s)	455
LweI	GCATC	1 cut(s)	455
MaeI	CTAG	3 cut(s)	188, 210, 1014
MaeIII	GTNAC	4 cut(s)	638, 782, 909, 998
MalI	GATC	4 cut(s)	231, 320, 480, 900
MboI	GATC	4 cut(s)	229, 318, 478, 898
MboII	GAAGA	6 cut(s)	30, 151, 297, 520, 704, 734
MflI	RGATCY	1 cut(s)	898
MlsI	TGGCCA	1 cut(s)	1045
MluCI	AATT	3 cut(s)	117, 513, 841
MluNI	TGGCCA	1 cut(s)	1045
MlyI	GAGTC	3 cut(s)	136, 811, 917
MmeI	TCCRAC	1 cut(s)	467
MnlI	CCTC	5 cut(s)	60, 568, 913, 975, 1028
Mox20I	TGGCCA	1 cut(s)	1045
MroI	TCCGGA	1 cut(s)	745
MroXI	GAANNNNTTC	1 cut(s)	584
MscI	TGGCCA	1 cut(s)	1045
MseI	TTAA	7 cut(s)	123, 254, 539, 561, 657, 665, 944
Msp20I	TGGCCA	1 cut(s)	1045
MspA1I	CMGCKG	1 cut(s)	825
MspI	CCGG	2 cut(s)	296, 746
Mva1269I	GAATGC	1 cut(s)	386
MvnI	CGCG	1 cut(s)	333
MwoI	GCNNNNNNNGC	1 cut(s)	831
NcoI	CCATGG	1 cut(s)	885
NdeII	GATC	4 cut(s)	229, 318, 478, 898
NlaIII	CATG	9 cut(s)	162, 230, 475, 535, 617, 634, 889, 898, 977
NmuCI	GTSAC	2 cut(s)	909, 998
PagI	TCATGA	1 cut(s)	973
PctI	GAATGC	1 cut(s)	386
PdmI	GAANNNNTTC	1 cut(s)	584
PfeI	GAWTC	4 cut(s)	180, 302, 737, 853
PflFI	GACNNNGTC	2 cut(s)	74, 752
PkrI	GCNGC	2 cut(s)	399, 470
PleI	GAGTC	3 cut(s)	136, 810, 916
PpsI	GAGTC	3 cut(s)	136, 810, 916
PstI	CTGCAG	1 cut(s)	156
PsuI	RGATCY	1 cut(s)	898
PsyI	GACNNNGTC	2 cut(s)	74, 752
RsaI	GTAC	1 cut(s)	222
RsaNI	GTAC	1 cut(s)	221
SaqAI	TTAA	7 cut(s)	123, 254, 539, 561, 657, 665, 944
SatI	GCNGC	2 cut(s)	398, 469
Sau3AI	GATC	4 cut(s)	229, 318, 478, 898
ScaI	AGTACT	1 cut(s)	222
SchI	GAGTC	3 cut(s)	136, 811, 917
SetI	ASST	9 cut(s)	52, 60, 115, 189, 211, 626, 951, 1025, 1039
SfaNI	GCATC	1 cut(s)	455
SfcI	CTRYAG	2 cut(s)	152, 279
SmlI	CTYRAG	1 cut(s)	619
SmoI	CTYRAG	1 cut(s)	619
Sse9I	AATT	3 cut(s)	117, 513, 841
SsiI	CCGC	2 cut(s)	397, 823
SspMI	CTAG	3 cut(s)	188, 210, 1014
StyI	CCWWGG	2 cut(s)	864, 885
TaaI	ACNGT	2 cut(s)	779, 971
TaqI	TCGA	1 cut(s)	679
TasI	AATT	3 cut(s)	117, 513, 841
TatI	WGTACW	1 cut(s)	220
TauI	GCSGC	1 cut(s)	400
TfiI	GAWTC	4 cut(s)	180, 302, 737, 853
Tru1I	TTAA	7 cut(s)	123, 254, 539, 561, 657, 665, 944
Tru9I	TTAA	7 cut(s)	123, 254, 539, 561, 657, 665, 944
TscAI	CASTG	3 cut(s)	22, 88, 250
TseFI	GTSAC	2 cut(s)	909, 998
TseI	GCWGC	1 cut(s)	468
Tsp45I	GTSAC	2 cut(s)	909, 998
TspDTI	ATGAA	8 cut(s)	17, 60, 116, 520, 577, 602, 849, 990
TspGWI	ACGGA	2 cut(s)	137, 477
TspRI	CASTG	3 cut(s)	22, 88, 250
Tth111I	GACNNNGTC	2 cut(s)	74, 752
XapI	RAATTY	1 cut(s)	513
XcmI	CCANNNNNNNNNTGG	1 cut(s)	892
XmnI	GAANNNNTTC	1 cut(s)	584
XspI	CTAG	3 cut(s)	188, 210, 1014
ZrmI	AGTACT	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.