Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0041879.1

Orthogroup ID

OG0013256

Physical Location & Seq

Genomic Coordinates Forward (+)

927 .. 1849

Gene Structure 923 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0041879.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

atggcttggtttttcctggcacatgtttccattccaaacctctcgactgtgatgttttattatcaaacagagttcttgaacttagaagcatcctttttgggcactgcacgtgttgtgggatggttaggtctcatgcttggaaccttcgtatataataagtacttaaagagaatgaatttgagaagaatcctcatgtggtctcaagttggtttggctttcttgactctccttgacattgttttagtgtctcgagtaaatctcaccttcggaatatcagataggattatggtgctctgtggctcagcacttagtgatgcagtcaatcagttcaagtttatgccattcctgatcttatctggacaactttgccctcctggaattgagggcactctctttgccctttttatgtcgataaataatttagggtcaacgttggggtcatttgtcggtgctggattggcttcacttttgagcatctcttcaggttcttttgacaaccttctattgggaattgtcgttcaagttctctgcatattcattccaattgctttcctatttttgataccgaaggaagctacaggaatatcagcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BT1

Protein Analysis

197

Amino Acids

21.57

Weight (kDa)

8.53

Isoelectric Point (pI)

27.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54860
fragaria_vesca	FvH4_3g22370 FvH4_3g22370 FvH4_3g22370 FvH4_3g22370
malus_domestica	MD03G1205600.v1.1
prunus_persica	Prupe.4G210100_v2.0.a1
pyrus_communis	pycom03g15530
rosa_chinensis	RchiOBHm_Chr5g0039011
rosa_laevigata	RLG00000033883
rosa_multiflora	Rmu_sc0041879.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042110
rosa_rugosa	Rorug05G0175600
rosa_samantha	Rh5AG262300 Rh5BG266900 Rh5CG299500 Rh5DG273400
rosa_wichuraiana	Rw5G024500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	431
AcsI	RAATTY	1 cut(s)	175
AcuI	CTGAAG	1 cut(s)	465
AcvI	CACGTG	1 cut(s)	110
AdeI	CACNNNGTG	1 cut(s)	311
AfaI	GTAC	1 cut(s)	161
AfiI	CCNNNNNNNGG	1 cut(s)	505
AflIII	ACRYGT	2 cut(s)	22, 109
AgsI	TTSAA	3 cut(s)	79, 331, 521
AjnI	CCWGG	2 cut(s)	15, 373
AloI	GAACNNNNNNTCC	2 cut(s)	501, 533
AluBI	AGCT	1 cut(s)	575
AluI	AGCT	1 cut(s)	575
Alw21I	GWGCWC	1 cut(s)	294
Alw26I	GTCTC	3 cut(s)	134, 204, 252
Ama87I	CYCGRG	1 cut(s)	249
ApoI	RAATTY	1 cut(s)	175
AsuHPI	GGTGA	1 cut(s)	253
AvaI	CYCGRG	1 cut(s)	249
BaeGI	GKGCMC	2 cut(s)	104, 389
BbrPI	CACGTG	1 cut(s)	110
Bbv12I	GWGCWC	1 cut(s)	294
BccI	CCATC	1 cut(s)	114
BciT130I	CCWGG	2 cut(s)	17, 375
BcoDI	GTCTC	3 cut(s)	134, 204, 252
BfmI	CTRYAG	1 cut(s)	576
BlpI	GCTNAGC	1 cut(s)	301
BmcAI	AGTACT	1 cut(s)	161
Bme1390I	CCNGG	2 cut(s)	17, 375
BmeT110I	CYCGRG	1 cut(s)	249
BmiI	GGNNCC	1 cut(s)	142
BmrFI	CCNGG	2 cut(s)	17, 375
BmsI	GCATC	3 cut(s)	98, 304, 483
BplI	GAGNNNNNCTC	2 cut(s)	243, 275
Bpu1102I	GCTNAGC	1 cut(s)	301
BpuEI	CTTGAG	1 cut(s)	186
BsaAI	YACGTR	1 cut(s)	110
BsaI	GGTCTC	2 cut(s)	134, 204
Bsc4I	CCNNNNNNNGG	1 cut(s)	505
BseBI	CCWGG	2 cut(s)	17, 375
BseGI	GGATG	2 cut(s)	89, 125
BseLI	CCNNNNNNNGG	1 cut(s)	505
BseMII	CTCAG	1 cut(s)	315
BseSI	GKGCMC	2 cut(s)	104, 389
BsgI	GTGCAG	1 cut(s)	90
BsiHKAI	GWGCWC	1 cut(s)	294
BsiHKCI	CYCGRG	1 cut(s)	249
BslI	CCNNNNNNNGG	1 cut(s)	505
BsmAI	GTCTC	3 cut(s)	134, 204, 252
Bso31I	GGTCTC	2 cut(s)	134, 204
BsoBI	CYCGRG	1 cut(s)	249
Bsp1286I	GDGCHC	3 cut(s)	104, 294, 389
Bsp143I	GATC	1 cut(s)	348
Bsp1720I	GCTNAGC	1 cut(s)	301
BspCNI	CTCAG	1 cut(s)	314
BspLI	GGNNCC	1 cut(s)	142
BspTNI	GGTCTC	2 cut(s)	134, 204
BssMI	GATC	1 cut(s)	348
Bst2UI	CCWGG	2 cut(s)	17, 375
Bst4CI	ACNGT	1 cut(s)	49
Bst6I	CTCTTC	1 cut(s)	484
BstBAI	YACGTR	1 cut(s)	110
BstDEI	CTNAG	3 cut(s)	82, 301, 308
BstF5I	GGATG	2 cut(s)	89, 125
BstKTI	GATC	1 cut(s)	351
BstMAI	GTCTC	3 cut(s)	134, 204, 252
BstMBI	GATC	1 cut(s)	348
BstMWI	GCNNNNNNNGC	1 cut(s)	458
BstNI	CCWGG	2 cut(s)	17, 375
BstNSI	RCATGY	1 cut(s)	26
BstSCI	CCNGG	2 cut(s)	15, 373
BstSFI	CTRYAG	1 cut(s)	576
BstSLI	GKGCMC	2 cut(s)	104, 389
BtsCI	GGATG	2 cut(s)	89, 125
BtsI	GCAGTG	1 cut(s)	102
BtsIMutI	CAGTG	1 cut(s)	102
Csp6I	GTAC	1 cut(s)	160
CviAII	CATG	3 cut(s)	23, 133, 193
CviJI	RGCY	5 cut(s)	5, 215, 300, 461, 575
CviKI_1	RGCY	5 cut(s)	5, 215, 300, 461, 575
CviQI	GTAC	1 cut(s)	160
DdeI	CTNAG	3 cut(s)	82, 301, 308
DpnI	GATC	1 cut(s)	350
DpnII	GATC	1 cut(s)	348
DraIII	CACNNNGTG	1 cut(s)	311
Eam1104I	CTCTTC	1 cut(s)	484
EarI	CTCTTC	1 cut(s)	484
Eco31I	GGTCTC	2 cut(s)	134, 204
Eco57I	CTGAAG	1 cut(s)	465
Eco72I	CACGTG	1 cut(s)	110
Eco88I	CYCGRG	1 cut(s)	249
EcoRII	CCWGG	2 cut(s)	15, 373
FaeI	CATG	3 cut(s)	26, 136, 196
FatI	CATG	3 cut(s)	22, 132, 192
FokI	GGATG	2 cut(s)	76, 132
Hin1II	CATG	3 cut(s)	26, 136, 196
HincII	GTYRAC	1 cut(s)	429
HindII	GTYRAC	1 cut(s)	429
HinfI	GANTC	2 cut(s)	186, 223
HphI	GGTGA	1 cut(s)	253
Hpy166II	GTNNAC	1 cut(s)	429
Hpy188I	TCNGA	2 cut(s)	269, 277
Hpy188III	TCNNGA	6 cut(s)	43, 76, 220, 249, 346, 357
Hpy8I	GTNNAC	1 cut(s)	429
HpyAV	CCTTC	4 cut(s)	154, 274, 509, 562
HpyCH4III	ACNGT	1 cut(s)	49
HpyCH4IV	ACGT	2 cut(s)	109, 431
HpyCH4V	TGCA	3 cut(s)	107, 317, 531
HpyF10VI	GCNNNNNNNGC	1 cut(s)	458
HpyF3I	CTNAG	3 cut(s)	82, 301, 308
HpySE526I	ACGT	2 cut(s)	109, 431
Hsp92II	CATG	3 cut(s)	26, 136, 196
Kzo9I	GATC	1 cut(s)	348
LpnPI	CCDG	9 cut(s)	2, 29, 342, 359, 360, 387, 438, 468, 564
LweI	GCATC	3 cut(s)	98, 304, 483
MaeII	ACGT	2 cut(s)	109, 431
MalI	GATC	1 cut(s)	350
MboI	GATC	1 cut(s)	348
MboII	GAAGA	2 cut(s)	195, 471
MfeI	CAATTG	1 cut(s)	543
MhlI	GDGCHC	3 cut(s)	104, 294, 389
MluCI	AATT	5 cut(s)	175, 378, 418, 510, 543
MlyI	GAGTC	1 cut(s)	217
MnlI	CCTC	4 cut(s)	50, 200, 376, 381
MseI	TTAA	1 cut(s)	164
MspR9I	CCNGG	2 cut(s)	17, 375
MunI	CAATTG	1 cut(s)	543
MvaI	CCWGG	2 cut(s)	17, 375
MwoI	GCNNNNNNNGC	1 cut(s)	458
NdeII	GATC	1 cut(s)	348
NlaIII	CATG	3 cut(s)	26, 136, 196
NlaIV	GGNNCC	1 cut(s)	142
NspI	RCATGY	1 cut(s)	26
PaeR7I	CTCGAG	1 cut(s)	249
PciI	ACATGT	1 cut(s)	22
PfeI	GAWTC	1 cut(s)	186
PfoI	TCCNGGA	1 cut(s)	373
PleI	GAGTC	1 cut(s)	217
PmaCI	CACGTG	1 cut(s)	110
PmlI	CACGTG	1 cut(s)	110
PpsI	GAGTC	1 cut(s)	217
Ppu21I	YACGTR	1 cut(s)	110
PscI	ACATGT	1 cut(s)	22
Psp1406I	AACGTT	1 cut(s)	431
Psp6I	CCWGG	2 cut(s)	15, 373
PspCI	CACGTG	1 cut(s)	110
PspGI	CCWGG	2 cut(s)	15, 373
PspN4I	GGNNCC	1 cut(s)	142
RsaI	GTAC	1 cut(s)	161
RsaNI	GTAC	1 cut(s)	160
SaqAI	TTAA	1 cut(s)	164
Sau3AI	GATC	1 cut(s)	348
ScaI	AGTACT	1 cut(s)	161
SchI	GAGTC	1 cut(s)	217
ScrFI	CCNGG	2 cut(s)	17, 375
SduI	GDGCHC	3 cut(s)	104, 294, 389
SetI	ASST	9 cut(s)	42, 112, 130, 146, 266, 434, 487, 501, 577
SfaNI	GCATC	3 cut(s)	98, 304, 483
SfcI	CTRYAG	1 cut(s)	576
Sfr274I	CTCGAG	1 cut(s)	249
SlaI	CTCGAG	1 cut(s)	249
SmlI	CTYRAG	2 cut(s)	201, 249
SmoI	CTYRAG	2 cut(s)	201, 249
Sse9I	AATT	5 cut(s)	175, 378, 418, 510, 543
StyD4I	CCNGG	2 cut(s)	15, 373
TaaI	ACNGT	1 cut(s)	49
TaiI	ACGT	2 cut(s)	112, 434
TaqI	TCGA	3 cut(s)	44, 250, 410
TasI	AATT	5 cut(s)	175, 378, 418, 510, 543
TatI	WGTACW	1 cut(s)	159
TfiI	GAWTC	1 cut(s)	186
Tru1I	TTAA	1 cut(s)	164
Tru9I	TTAA	1 cut(s)	164
TscAI	CASTG	1 cut(s)	109
TspDTI	ATGAA	2 cut(s)	188, 526
TspRI	CASTG	1 cut(s)	109
XapI	RAATTY	1 cut(s)	175
XceI	RCATGY	1 cut(s)	26
XhoI	CTCGAG	1 cut(s)	249
ZrmI	AGTACT	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.