Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0042567.1

Orthogroup ID

OG0006323

Physical Location & Seq

Genomic Coordinates Reverse (-)

926 .. 1891

Gene Structure 966 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0042567.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

atggaggaaggcaataaaggagactataagtcatcgaggggagttggaagctttaagtctgcattgtcagggcgatcaagtccgcgaaactctccctcatttcggagattgcactcaagccgtactccccgaagagaagctagaactagtggaggtgtacagtggtttcggagcaatcggttactgttttggttgttattgattactctttgggcttatcttggattttattttcagtcaagttgggcgcatagcaataacaaggagaactttctgggggttggaaatgaagcaagcaatgagaagccagatgatttgcttgtcgatgacagtcctgtggcactgaagaatgagactgctcaaagtgaaccgaaagctggtaaaagcatagacgtggttttggcaaaaaaagatgatggagttgcatctcgtaggagcctgagttcaaagaagaagagtaagaaagcagctcgtggtaaagctcgtggaaagccaaagaaaactgtggagcttgaagtccatgagatggaggagcaggaaccggacattcctaagaccaatacatcttatgggatgcttgttggtccatttggttctgcggaggatagaattctggaatggagtcccaaaatacgatctggaacctgtgacaggaagggggactttgcacgtcttgtatggtcaaggagatttctgttaatattccatgaactttcaatgactggggcacccctttcaatgatggagctggcaacagagcttttgagctgtggagccacagtttctgctgtagttcttagcaagaagggtggcttgatgccagagcttactaggagaaaaatcaaggtgcttgaggacaaagtagatcatagcttcaaaactgccatgaaacaagatctcgttattgccgggtcagcagtctgtgcatcatggatcggtgagaaccatttgctagaaagtcattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0016740 GO:0016757

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_trans_4_5 Glycos_transf_1

Protein Analysis

321

Amino Acids

35.63

Weight (kDa)

9.66

Isoelectric Point (pI)

44.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006323)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52420 AT3G15940 AT3G15940
fragaria_vesca	FvH4_6g30940 FvH4_6g30940 FvH4_6g30940 FvH4_6g30940
malus_domestica	MD00G1200900.v1.1 MD17G1197500.v1.1
prunus_persica	Prupe.3G073400_v2.0.a1 Prupe.3G073400_v2.0.a1 Prupe.3G073400_v2.0.a1 Prupe.3G073400_v2.0.a1
pyrus_communis	pycom09g13180 pycom17g20240
rosa_chinensis	RchiOBHm_Chr2g0137571
rosa_laevigata	RLG00000019662
rosa_multiflora	Rmu_sc0042567.1_g000001
rosa_roxburghii	Rroxscaffold_2G00107010
rosa_rugosa	Rorug02G0343200 Rorug02G0343300 Rorug02G0343400
rosa_samantha	Rh2AG391000 Rh2BG398500 Rh2CG378000 Rh2DG413600
rosa_wichuraiana	Rw2G032030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	727
AccB7I	CCANNNNNTGG	1 cut(s)	526
AccII	CGCG	1 cut(s)	85
AciI	CCGC	2 cut(s)	83, 599
AclWI	GGATC	1 cut(s)	941
AcsI	RAATTY	1 cut(s)	609
AcuI	CTGAAG	1 cut(s)	365
AfaI	GTAC	2 cut(s)	124, 159
AfiI	CCNNNNNNNGG	4 cut(s)	102, 377, 526, 651
AgsI	TTSAA	5 cut(s)	447, 515, 717, 738, 877
AhdI	GACNNNNNGTC	1 cut(s)	28
AhlI	ACTAGT	1 cut(s)	146
AjiI	CACGTC	2 cut(s)	394, 671
AloI	GAACNNNNNNTCC	2 cut(s)	427, 459
Alw26I	GTCTC	2 cut(s)	15, 347
AlwI	GGATC	1 cut(s)	941
AlwNI	CAGNNNCTG	1 cut(s)	785
ApeKI	GCWGC	1 cut(s)	467
ApoI	RAATTY	1 cut(s)	609
AspLEI	GCGC	1 cut(s)	250
AspS9I	GGNCC	1 cut(s)	584
AsuC2I	CCSGG	1 cut(s)	910
AsuHPI	GGTGA	1 cut(s)	950
AvaII	GGWCC	1 cut(s)	584
BaeGI	GKGCMC	1 cut(s)	730
BanI	GGYRCC	1 cut(s)	727
BauI	CACGAG	2 cut(s)	471, 483
BbvI	GCAGC	1 cut(s)	479
BccI	CCATC	3 cut(s)	410, 520, 736
BceAI	ACGGC	1 cut(s)	105
BcnI	CCSGG	1 cut(s)	910
BcoDI	GTCTC	2 cut(s)	15, 347
BcuI	ACTAGT	1 cut(s)	146
BfaI	CTAG	4 cut(s)	141, 147, 831, 953
BfmI	CTRYAG	1 cut(s)	789
BglII	AGATCT	1 cut(s)	895
BisI	GCNGC	1 cut(s)	468
BlsI	GCNGC	1 cut(s)	469
Bme1390I	CCNGG	1 cut(s)	910
Bme18I	GGWCC	1 cut(s)	584
BmeRI	GACNNNNNGTC	1 cut(s)	28
BmgBI	CACGTC	2 cut(s)	394, 671
BmgT120I	GGNCC	1 cut(s)	584
BmiI	GGNNCC	5 cut(s)	437, 540, 643, 729, 775
BmrFI	CCNGG	1 cut(s)	910
BmrI	ACTGGG	1 cut(s)	732
BmsI	GCATC	4 cut(s)	434, 564, 807, 935
BmuI	ACTGGG	1 cut(s)	732
BpuEI	CTTGAG	2 cut(s)	100, 872
BpuMI	CCSGG	1 cut(s)	910
BsaWI	WCCGGW	1 cut(s)	541
BsaXI	ACNNNNNCTCC	4 cut(s)	427, 457, 765, 795
Bsc4I	CCNNNNNNNGG	4 cut(s)	102, 377, 526, 651
Bse1I	ACTGG	1 cut(s)	727
Bse3DI	GCAATG	1 cut(s)	304
BseGI	GGATG	1 cut(s)	579
BseLI	CCNNNNNNNGG	4 cut(s)	102, 377, 526, 651
BseMI	GCAATG	1 cut(s)	304
BseMII	CTCAG	1 cut(s)	431
BseNI	ACTGG	1 cut(s)	727
BseRI	GAGGAG	1 cut(s)	545
BseSI	GKGCMC	1 cut(s)	730
BseXI	GCAGC	1 cut(s)	479
Bsh1236I	CGCG	1 cut(s)	85
BshNI	GGYRCC	1 cut(s)	727
BsiSI	CCGG	2 cut(s)	542, 909
BslFI	GGGAC	2 cut(s)	609, 674
BslI	CCNNNNNNNGG	4 cut(s)	102, 377, 526, 651
BsmAI	GTCTC	2 cut(s)	15, 347
BsmFI	GGGAC	2 cut(s)	609, 674
Bsp1286I	GDGCHC	1 cut(s)	730
Bsp1407I	TGTACA	1 cut(s)	157
Bsp143I	GATC	5 cut(s)	74, 635, 865, 895, 933
BspACI	CCGC	2 cut(s)	83, 599
BspCNI	CTCAG	1 cut(s)	432
BspFNI	CGCG	1 cut(s)	85
BspLI	GGNNCC	5 cut(s)	437, 540, 643, 729, 775
BspPI	GGATC	1 cut(s)	941
BspT107I	GGYRCC	1 cut(s)	727
BsrDI	GCAATG	1 cut(s)	304
BsrGI	TGTACA	1 cut(s)	157
BsrI	ACTGG	1 cut(s)	727
BssMI	GATC	5 cut(s)	74, 635, 865, 895, 933
BssSI	CACGAG	2 cut(s)	471, 483
Bst2BI	CACGAG	2 cut(s)	471, 483
Bst4CI	ACNGT	5 cut(s)	162, 186, 332, 505, 781
Bst6I	CTCTTC	2 cut(s)	127, 449
BstAPI	GCANNNNNTGC	1 cut(s)	923
BstAUI	TGTACA	1 cut(s)	157
BstC8I	GCNNGC	2 cut(s)	295, 750
BstDEI	CTNAG	3 cut(s)	440, 552, 797
BstENI	CCTNNNNNAGG	1 cut(s)	649
BstF5I	GGATG	1 cut(s)	579
BstFNI	CGCG	1 cut(s)	85
BstHHI	GCGC	1 cut(s)	250
BstKTI	GATC	5 cut(s)	77, 638, 868, 898, 936
BstMAI	GTCTC	2 cut(s)	15, 347
BstMBI	GATC	5 cut(s)	74, 635, 865, 895, 933
BstMWI	GCNNNNNNNGC	2 cut(s)	914, 923
BstSCI	CCNGG	1 cut(s)	908
BstSFI	CTRYAG	1 cut(s)	789
BstSLI	GKGCMC	1 cut(s)	730
BstUI	CGCG	1 cut(s)	85
BstV1I	GCAGC	1 cut(s)	479
BstX2I	RGATCY	1 cut(s)	895
BstYI	RGATCY	1 cut(s)	895
BtrI	CACGTC	2 cut(s)	394, 671
BtsCI	GGATG	1 cut(s)	579
BtsIMutI	CAGTG	2 cut(s)	167, 341
Cac8I	GCNNGC	2 cut(s)	295, 750
CaiI	CAGNNNCTG	1 cut(s)	785
CfoI	GCGC	1 cut(s)	250
Cfr13I	GGNCC	1 cut(s)	584
Csp6I	GTAC	2 cut(s)	123, 158
CspCI	CAANNNNNGTGG	2 cut(s)	790, 825
CviAII	CATG	4 cut(s)	521, 707, 886, 930
CviQI	GTAC	2 cut(s)	123, 158
DdeI	CTNAG	3 cut(s)	440, 552, 797
DpnI	GATC	5 cut(s)	76, 637, 867, 897, 935
DpnII	GATC	5 cut(s)	74, 635, 865, 895, 933
DriI	GACNNNNNGTC	1 cut(s)	28
Eam1104I	CTCTTC	2 cut(s)	127, 449
Eam1105I	GACNNNNNGTC	1 cut(s)	28
EarI	CTCTTC	2 cut(s)	127, 449
Eco47I	GGWCC	1 cut(s)	584
Eco57I	CTGAAG	1 cut(s)	365
EcoNI	CCTNNNNNAGG	1 cut(s)	649
EcoRI	GAATTC	1 cut(s)	609
FaeI	CATG	4 cut(s)	524, 710, 889, 933
FalI	AAGNNNNNCTT	6 cut(s)	254, 286, 647, 679, 797, 829
FaqI	GGGAC	2 cut(s)	609, 674
FatI	CATG	4 cut(s)	520, 706, 885, 929
Fnu4HI	GCNGC	1 cut(s)	468
FokI	GGATG	1 cut(s)	586
Fsp4HI	GCNGC	1 cut(s)	468
FspBI	CTAG	4 cut(s)	141, 147, 831, 953
GlaI	GCGC	1 cut(s)	249
GluI	GCNGC	1 cut(s)	468
HapII	CCGG	2 cut(s)	542, 909
HhaI	GCGC	1 cut(s)	250
Hin1II	CATG	4 cut(s)	524, 710, 889, 933
Hin6I	GCGC	1 cut(s)	248
HinP1I	GCGC	1 cut(s)	248
HindIII	AAGCTT	1 cut(s)	49
HinfI	GANTC	1 cut(s)	622
HpaII	CCGG	2 cut(s)	542, 909
HphI	GGTGA	1 cut(s)	950
Hpy166II	GTNNAC	2 cut(s)	158, 368
Hpy188I	TCNGA	2 cut(s)	105, 171
Hpy188III	TCNNGA	2 cut(s)	614, 639
Hpy8I	GTNNAC	2 cut(s)	158, 368
HpyAV	CCTTC	2 cut(s)	649, 799
HpyCH4III	ACNGT	5 cut(s)	162, 186, 332, 505, 781
HpyCH4IV	ACGT	2 cut(s)	393, 670
HpyCH4V	TGCA	5 cut(s)	62, 112, 425, 668, 926
HpyF10VI	GCNNNNNNNGC	2 cut(s)	914, 923
HpyF3I	CTNAG	3 cut(s)	440, 552, 797
HpySE526I	ACGT	2 cut(s)	393, 670
Hsp92II	CATG	4 cut(s)	524, 710, 889, 933
HspAI	GCGC	1 cut(s)	248
Kzo9I	GATC	5 cut(s)	74, 635, 865, 895, 933
LmnI	GCTCC	6 cut(s)	171, 435, 508, 532, 745, 773
Lsp1109I	GCAGC	1 cut(s)	479
LweI	GCATC	4 cut(s)	434, 564, 807, 935
MaeI	CTAG	4 cut(s)	141, 147, 831, 953
MaeII	ACGT	2 cut(s)	393, 670
MaeIII	GTNAC	2 cut(s)	180, 647
MalI	GATC	5 cut(s)	76, 637, 867, 897, 935
MboI	GATC	5 cut(s)	74, 635, 865, 895, 933
MboII	GAAGA	4 cut(s)	144, 358, 463, 466
MflI	RGATCY	1 cut(s)	895
MhlI	GDGCHC	1 cut(s)	730
MluCI	AATT	1 cut(s)	609
MlyI	GAGTC	1 cut(s)	631
MmeI	TCCRAC	2 cut(s)	25, 262
MnlI	CCTC	6 cut(s)	30, 106, 146, 523, 595, 847
MseI	TTAA	2 cut(s)	54, 698
MslI	CAYNNNNRTG	1 cut(s)	392
MspI	CCGG	2 cut(s)	542, 909
MspR9I	CCNGG	1 cut(s)	910
MvnI	CGCG	1 cut(s)	85
MwoI	GCNNNNNNNGC	2 cut(s)	914, 923
NciI	CCSGG	1 cut(s)	910
NdeII	GATC	5 cut(s)	74, 635, 865, 895, 933
NlaIII	CATG	4 cut(s)	524, 710, 889, 933
NlaIV	GGNNCC	5 cut(s)	437, 540, 643, 729, 775
NmuCI	GTSAC	1 cut(s)	647
PflMI	CCANNNNNTGG	1 cut(s)	526
PkrI	GCNGC	1 cut(s)	469
PleI	GAGTC	1 cut(s)	630
PpsI	GAGTC	1 cut(s)	630
PspN4I	GGNNCC	5 cut(s)	437, 540, 643, 729, 775
PspPI	GGNCC	1 cut(s)	584
PstNI	CAGNNNCTG	1 cut(s)	785
PsuI	RGATCY	1 cut(s)	895
RsaI	GTAC	2 cut(s)	124, 159
RsaNI	GTAC	2 cut(s)	123, 158
RseI	CAYNNNNRTG	1 cut(s)	392
SaqAI	TTAA	2 cut(s)	54, 698
SatI	GCNGC	1 cut(s)	468
Sau3AI	GATC	5 cut(s)	74, 635, 865, 895, 933
Sau96I	GGNCC	1 cut(s)	584
SchI	GAGTC	1 cut(s)	631
ScrFI	CCNGG	1 cut(s)	910
SduI	GDGCHC	1 cut(s)	730
SfaNI	GCATC	4 cut(s)	434, 564, 807, 935
SfcI	CTRYAG	1 cut(s)	789
SinI	GGWCC	1 cut(s)	584
SmiMI	CAYNNNNRTG	1 cut(s)	392
SmlI	CTYRAG	2 cut(s)	115, 851
SmoI	CTYRAG	2 cut(s)	115, 851
SpeI	ACTAGT	1 cut(s)	146
Sse9I	AATT	1 cut(s)	609
SsiI	CCGC	2 cut(s)	83, 599
SspI	AATATT	1 cut(s)	702
SspMI	CTAG	4 cut(s)	141, 147, 831, 953
StyD4I	CCNGG	1 cut(s)	908
TaaI	ACNGT	5 cut(s)	162, 186, 332, 505, 781
TaiI	ACGT	2 cut(s)	396, 673
TaqI	TCGA	2 cut(s)	35, 324
TasI	AATT	1 cut(s)	609
TatI	WGTACW	1 cut(s)	157
Tru1I	TTAA	2 cut(s)	54, 698
Tru9I	TTAA	2 cut(s)	54, 698
TscAI	CASTG	2 cut(s)	167, 348
TseFI	GTSAC	1 cut(s)	647
TseI	GCWGC	1 cut(s)	467
Tsp45I	GTSAC	1 cut(s)	647
TspDTI	ATGAA	3 cut(s)	303, 723, 902
TspRI	CASTG	2 cut(s)	167, 348
Van91I	CCANNNNNTGG	1 cut(s)	526
VpaK11BI	GGWCC	1 cut(s)	584
XagI	CCTNNNNNAGG	1 cut(s)	649
XapI	RAATTY	1 cut(s)	609
XspI	CTAG	4 cut(s)	141, 147, 831, 953

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.