Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005673

Physical Location & Seq

Genomic Coordinates Reverse (-)

42825924 .. 42827934

Gene Structure 2011 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0343400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1512 bp

ATGATCTATTGTTGGTTTAGCTTAGCTGCTTCCATATTGTTTTTGTTCACAGCGAATGCATTATCAGCCAACTCCAGCCTCAGAATTCCCTTCCCATTTGACATAAAAAGAGCAAAAGAATTTTATCTAAGCGACGGGGTTGACTTTAGGCAAAGCAAAAACAACGCTACTAATATTAACTTCTGTTTTGAGAAAGCTTTGAGTTTAGCCGGTTTAGGGTATTGGTGCAGCATCCAAGGGGATGCTTATGGCAATGAATATGGCTATGGCTTTGGGTTATATGCATATGCCTATAACTATGAAACAAAGACACTTCATCCCACTGATGTATGCCAAGCTATCGAGGAACAGGAGTGGAAGGAAGTACCCGAGTACTGTTACTATGGTGTTTGTCCACTTCCTTGGACCTTCGATGCTTGTTCATATCGGTATGGAATTATACGATCTATACCGAAAATATCAGGAAATCATGGTCCGTCGTTTTTTTTGGCTCCCCCTATGTATTTGCAAGTCCCTTTCATTTTAGGTTGTTACTCCTCTCTTTCTCTGCTTTTGTACGTGCTCTTGGGTATTTATTCTAGCGTGAAGAAAAACATCTTCATTCATCTTAAATTCAAGTTGTTCAAAAAAAATGGAGGGTTATTGTTAGAGCAGCATATTGCTAATTCTCATGGACCTGGAGCAGGATGCACAAAAATTTTCACAGCCGAGGAGCTTGTGATGGAGATCAGTTTTGCAAAAGAAAAGGTACTAGTGGAGGAGGGCCAAATCGAGTGTTTTATAAATGAGATTATCACTCTTGCCCATATCAACCATCAAAATGTGATCAAGTTCTTGGGCTGCTGTTTAGAGACTGAAGCTCCCATTTTGGTTTATGAATTCACCTCTAACAGGACCCTTTTCGATTACATTCATGATTGGAAAAATGGGAAAGTTGCAATGCCACATTGGGATATCCTTATGGAGATAGCATCAGAATCTGCAGCAGGTCTTGCTTATTTGCATTCTTCATCAATCATTCATGGAAATGTCAAATCTTCCAACATTTTACTAACTGATTGCTTGGTCAAAGTTGCTGGTTTTGGACCTCCAAGTTTAGTCCCTAGCAATGAGTCCCAGATAAGTACATTGGTGCAGAGGACACTCGGTTATCTGGACCCAGAGTATTTCGTTACAGGCCAATTGACAGATAAGAGTGATGTCTACAGCTTTGGAGTCGTTTTGGTAGAAATTTTAACTGGAGAGAAGCCCATATCCTTTAATAGACCAGAAAATCAACGAATCATAACTTGTCATTTCCTTTTGTCCATGGATCAACAAAATGGCCTGTTTCAGATTCTTGCTCCACAAGTTAAGGAAGAAAACAAAGAACAAGTAAGAGCAGTCGCAGAACTCGCAAAGCAATGCCTCAAGTTGAGTAGTGCAGAAAGACCAACAATGGAAGAAGTGGCCCGAGAGTTAAAGAGGCTGTCACTCCTGTCAGACACGTATCTTACGGTTCATGTTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0016740 GO:0016757

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_trans_4_5 Glycos_transf_1

Protein Analysis

503

Amino Acids

56.6

Weight (kDa)

5.76

Isoelectric Point (pI)

41.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	254 - 487	1.3e-35	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	256 - 484	6.1e-33	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15670 AT1G80440
fragaria_vesca	FvH4_6g30930 FvH4_6g30950
malus_domestica	MD17G1197600.v1.1
prunus_persica	Prupe.3G073600_v2.0.a1
pyrus_communis	pycom17g20250
rosa_chinensis	RchiOBHm_Chr2g0137541 RchiOBHm_Chr2g0137561
rosa_laevigata	RLG00000019660 RLG00000019661
rosa_multiflora	Rmu_co8224660.1_g000001 Rmu_sc0000765.1_g000013 Rmu_sc0038827.1_g000001
rosa_roxburghii	Rroxscaffold_2G00107020 Rroxscaffold_2G00107030
rosa_rugosa	Rorug02G0343100 Rorug02G0343400
rosa_samantha	Rh2AG390700 Rh2AG391100 Rh2BG398400 Rh2BG398600 Rh2CG377900 Rh2CG378100 Rh2DG413400 Rh2DG413500
rosa_wichuraiana	Rw2G032010 Rw2G032020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	782
Acc36I	ACCTGC	1 cut(s)	977
AccI	GTMKAC	1 cut(s)	1203
AclWI	GGATC	1 cut(s)	1320
AcsI	RAATTY	6 cut(s)	84, 119, 611, 696, 878, 1230
AcuI	CTGAAG	1 cut(s)	876
AfaI	GTAC	5 cut(s)	366, 374, 557, 750, 1126
AfiI	CCNNNNNNNGG	3 cut(s)	216, 683, 891
AflIII	ACRYGT	1 cut(s)	1485
AgsI	TTSAA	2 cut(s)	616, 625
AhlI	ACTAGT	1 cut(s)	751
AjnI	CCWGG	1 cut(s)	676
AluBI	AGCT	7 cut(s)	21, 26, 197, 338, 715, 860, 1209
AluI	AGCT	7 cut(s)	21, 26, 197, 338, 715, 860, 1209
Alw21I	GWGCWC	1 cut(s)	564
Alw26I	GTCTC	1 cut(s)	845
AlwI	GGATC	1 cut(s)	1320
AlwNI	CAGNNNCTG	1 cut(s)	980
Ama87I	CYCGRG	2 cut(s)	368, 1452
AoxI	GGCC	4 cut(s)	763, 1177, 1324, 1449
ApeKI	GCWGC	5 cut(s)	26, 228, 652, 840, 983
ApoI	RAATTY	6 cut(s)	84, 119, 611, 696, 878, 1230
AspS9I	GGNCC	8 cut(s)	405, 473, 674, 763, 894, 1085, 1156, 1450
AsuHPI	GGTGA	1 cut(s)	874
AvaI	CYCGRG	2 cut(s)	368, 1452
AvaII	GGWCC	6 cut(s)	405, 473, 674, 894, 1085, 1156
Bbv12I	GWGCWC	1 cut(s)	564
BbvI	GCAGC	5 cut(s)	13, 240, 664, 827, 995
BccI	CCATC	2 cut(s)	715, 822
BciT130I	CCWGG	1 cut(s)	678
BclI	TGATCA	1 cut(s)	825
BcoDI	GTCTC	1 cut(s)	845
BcuI	ACTAGT	1 cut(s)	751
BfaI	CTAG	3 cut(s)	579, 752, 1104
BfmI	CTRYAG	2 cut(s)	981, 1204
BfuAI	ACCTGC	1 cut(s)	977
BisI	GCNGC	5 cut(s)	27, 229, 653, 841, 984
BlpI	GCTNAGC	1 cut(s)	22
BlsI	GCNGC	5 cut(s)	28, 230, 654, 842, 985
BmcAI	AGTACT	1 cut(s)	374
Bme1390I	CCNGG	1 cut(s)	678
Bme18I	GGWCC	6 cut(s)	405, 473, 674, 894, 1085, 1156
BmeT110I	CYCGRG	2 cut(s)	368, 1452
BmgT120I	GGNCC	8 cut(s)	405, 473, 674, 763, 894, 1085, 1156, 1450
BmiI	GGNNCC	3 cut(s)	492, 896, 1158
BmrFI	CCNGG	1 cut(s)	678
BmsI	GCATC	5 cut(s)	232, 240, 403, 677, 980
BpmI	CTGGAG	3 cut(s)	58, 699, 1260
Bpu1102I	GCTNAGC	1 cut(s)	22
BpuEI	CTTGAG	1 cut(s)	1394
BsaAI	YACGTR	2 cut(s)	559, 1488
BsaBI	GATNNNNATC	1 cut(s)	725
BsaJI	CCNNGG	4 cut(s)	235, 401, 708, 1308
BsaXI	ACNNNNNCTCC	2 cut(s)	844, 874
Bsc4I	CCNNNNNNNGG	3 cut(s)	216, 683, 891
Bse118I	RCCGGY	1 cut(s)	209
Bse1I	ACTGG	1 cut(s)	1243
Bse3DI	GCAATG	4 cut(s)	259, 945, 1114, 1409
Bse8I	GATNNNNATC	1 cut(s)	725
BseBI	CCWGG	1 cut(s)	678
BseDI	CCNNGG	4 cut(s)	235, 401, 708, 1308
BseGI	GGATG	4 cut(s)	231, 247, 316, 692
BseJI	GATNNNNATC	1 cut(s)	725
BseLI	CCNNNNNNNGG	3 cut(s)	216, 683, 891
BseMI	GCAATG	4 cut(s)	259, 945, 1114, 1409
BseMII	CTCAG	1 cut(s)	94
BseNI	ACTGG	1 cut(s)	1243
BseRI	GAGGAG	3 cut(s)	526, 725, 773
BseXI	GCAGC	5 cut(s)	13, 240, 664, 827, 995
BsgI	GTGCAG	3 cut(s)	247, 1154, 1443
BshFI	GGCC	4 cut(s)	765, 1179, 1326, 1451
BsiHKAI	GWGCWC	1 cut(s)	564
BsiHKCI	CYCGRG	2 cut(s)	368, 1452
BsiSI	CCGG	1 cut(s)	210
BslFI	GGGAC	3 cut(s)	497, 1085, 1099
BslI	CCNNNNNNNGG	3 cut(s)	216, 683, 891
BsmAI	GTCTC	1 cut(s)	845
BsmFI	GGGAC	3 cut(s)	497, 1085, 1099
BsmI	GAATGC	2 cut(s)	61, 1003
BsnI	GGCC	4 cut(s)	765, 1179, 1326, 1451
BsoBI	CYCGRG	2 cut(s)	368, 1452
Bsp1286I	GDGCHC	1 cut(s)	564
Bsp143I	GATC	5 cut(s)	3, 443, 726, 825, 1312
Bsp1720I	GCTNAGC	1 cut(s)	22
Bsp19I	CCATGG	1 cut(s)	1308
BspANI	GGCC	4 cut(s)	765, 1179, 1326, 1451
BspCNI	CTCAG	1 cut(s)	93
BspHI	TCATGA	1 cut(s)	913
BspLI	GGNNCC	3 cut(s)	492, 896, 1158
BspMAI	CTGCAG	1 cut(s)	985
BspMI	ACCTGC	1 cut(s)	977
BspPI	GGATC	1 cut(s)	1320
BsrDI	GCAATG	4 cut(s)	259, 945, 1114, 1409
BsrFI	RCCGGY	1 cut(s)	209
BsrI	ACTGG	1 cut(s)	1243
BssAI	RCCGGY	1 cut(s)	209
BssECI	CCNNGG	4 cut(s)	235, 401, 708, 1308
BssMI	GATC	5 cut(s)	3, 443, 726, 825, 1312
BssT1I	CCWWGG	3 cut(s)	235, 401, 1308
Bst2UI	CCWGG	1 cut(s)	678
Bst4CI	ACNGT	2 cut(s)	377, 1498
BstAPI	GCANNNNNTGC	1 cut(s)	992
BstBAI	YACGTR	2 cut(s)	559, 1488
BstDEI	CTNAG	3 cut(s)	22, 80, 128
BstDSI	CCRYGG	1 cut(s)	1308
BstENI	CCTNNNNNAGG	2 cut(s)	681, 889
BstF5I	GGATG	4 cut(s)	231, 247, 316, 692
BstKTI	GATC	5 cut(s)	6, 446, 729, 828, 1315
BstMAI	GTCTC	1 cut(s)	845
BstMBI	GATC	5 cut(s)	3, 443, 726, 825, 1312
BstMWI	GCNNNNNNNGC	3 cut(s)	65, 992, 1394
BstNI	CCWGG	1 cut(s)	678
BstSCI	CCNGG	1 cut(s)	676
BstSFI	CTRYAG	2 cut(s)	981, 1204
BstV1I	GCAGC	5 cut(s)	13, 240, 664, 827, 995
BstXI	CCANNNNNNTGG	1 cut(s)	402
BsuRI	GGCC	4 cut(s)	765, 1179, 1326, 1451
BtgI	CCRYGG	1 cut(s)	1308
BtsCI	GGATG	4 cut(s)	231, 247, 316, 692
BtsIMutI	CAGTG	1 cut(s)	321
BveI	ACCTGC	1 cut(s)	977
CaiI	CAGNNNCTG	1 cut(s)	980
CciI	TCATGA	1 cut(s)	913
Cfr10I	RCCGGY	1 cut(s)	209
Cfr13I	GGNCC	8 cut(s)	405, 473, 674, 763, 894, 1085, 1156, 1450
Csp6I	GTAC	5 cut(s)	365, 373, 556, 749, 1125
CviAII	CATG	6 cut(s)	470, 671, 914, 1022, 1309, 1502
CviQI	GTAC	5 cut(s)	365, 373, 556, 749, 1125
DdeI	CTNAG	3 cut(s)	22, 80, 128
DpnI	GATC	5 cut(s)	5, 445, 728, 827, 1314
DpnII	GATC	5 cut(s)	3, 443, 726, 825, 1312
Eco130I	CCWWGG	3 cut(s)	235, 401, 1308
Eco32I	GATATC	1 cut(s)	955
Eco47I	GGWCC	6 cut(s)	405, 473, 674, 894, 1085, 1156
Eco57I	CTGAAG	1 cut(s)	876
Eco88I	CYCGRG	2 cut(s)	368, 1452
EcoNI	CCTNNNNNAGG	2 cut(s)	681, 889
EcoO109I	RGGNCCY	1 cut(s)	894
EcoRI	GAATTC	2 cut(s)	84, 878
EcoRII	CCWGG	1 cut(s)	676
EcoRV	GATATC	1 cut(s)	955
EcoT14I	CCWWGG	3 cut(s)	235, 401, 1308
EcoT22I	ATGCAT	2 cut(s)	61, 286
ErhI	CCWWGG	3 cut(s)	235, 401, 1308
FaeI	CATG	6 cut(s)	473, 674, 917, 1025, 1312, 1505
FaqI	GGGAC	3 cut(s)	497, 1085, 1099
FatI	CATG	6 cut(s)	469, 670, 913, 1021, 1308, 1501
FauNDI	CATATG	1 cut(s)	286
FbaI	TGATCA	1 cut(s)	825
FblI	GTMKAC	1 cut(s)	1203
Fnu4HI	GCNGC	5 cut(s)	27, 229, 653, 841, 984
FokI	GGATG	4 cut(s)	218, 254, 303, 699
Fsp4HI	GCNGC	5 cut(s)	27, 229, 653, 841, 984
FspBI	CTAG	3 cut(s)	579, 752, 1104
GluI	GCNGC	5 cut(s)	27, 229, 653, 841, 984
GsuI	CTGGAG	3 cut(s)	58, 699, 1260
HaeIII	GGCC	4 cut(s)	765, 1179, 1326, 1451
HapII	CCGG	1 cut(s)	210
Hin1II	CATG	6 cut(s)	473, 674, 917, 1025, 1312, 1505
HincII	GTYRAC	1 cut(s)	142
HindII	GTYRAC	1 cut(s)	142
HindIII	AAGCTT	1 cut(s)	195
HinfI	GANTC	5 cut(s)	977, 1112, 1215, 1281, 1336
HpaII	CCGG	1 cut(s)	210
HphI	GGTGA	1 cut(s)	874
Hpy166II	GTNNAC	4 cut(s)	48, 142, 395, 1204
Hpy188I	TCNGA	4 cut(s)	83, 976, 1335, 1483
Hpy188III	TCNNGA	3 cut(s)	462, 914, 1154
Hpy8I	GTNNAC	4 cut(s)	48, 142, 395, 1204
Hpy99I	CGWCG	2 cut(s)	137, 481
HpyAV	CCTTC	3 cut(s)	100, 352, 418
HpyCH4III	ACNGT	2 cut(s)	377, 1498
HpyCH4IV	ACGT	2 cut(s)	558, 1487
HpyF10VI	GCNNNNNNNGC	3 cut(s)	65, 992, 1394
HpyF3I	CTNAG	3 cut(s)	22, 80, 128
HpySE526I	ACGT	2 cut(s)	558, 1487
Hsp92II	CATG	6 cut(s)	473, 674, 917, 1025, 1312, 1505
Ksp22I	TGATCA	1 cut(s)	825
Kzo9I	GATC	5 cut(s)	3, 443, 726, 825, 1312
LmnI	GCTCC	5 cut(s)	496, 680, 712, 865, 1348
Lsp1109I	GCAGC	5 cut(s)	13, 240, 664, 827, 995
LweI	GCATC	5 cut(s)	232, 240, 403, 677, 980
MaeI	CTAG	3 cut(s)	579, 752, 1104
MaeII	ACGT	2 cut(s)	558, 1487
MaeIII	GTNAC	4 cut(s)	377, 530, 1171, 1470
MalI	GATC	5 cut(s)	5, 445, 728, 827, 1314
MboI	GATC	5 cut(s)	3, 443, 726, 825, 1312
MboII	GAAGA	6 cut(s)	589, 598, 999, 1029, 1370, 1454
MfeI	CAATTG	1 cut(s)	1181
MhlI	GDGCHC	1 cut(s)	564
MluCI	AATT	9 cut(s)	84, 119, 435, 611, 664, 696, 878, 1181, 1230
MlyI	GAGTC	2 cut(s)	1121, 1224
MmeI	TCCRAC	1 cut(s)	1065
Mph1103I	ATGCAT	2 cut(s)	61, 286
MseI	TTAA	7 cut(s)	177, 609, 1235, 1260, 1353, 1460, 1510
MslI	CAYNNNNRTG	2 cut(s)	819, 1026
MspI	CCGG	1 cut(s)	210
MspR9I	CCNGG	1 cut(s)	678
MunI	CAATTG	1 cut(s)	1181
Mva1269I	GAATGC	2 cut(s)	61, 1003
MvaI	CCWGG	1 cut(s)	678
MwoI	GCNNNNNNNGC	3 cut(s)	65, 992, 1394
NcoI	CCATGG	1 cut(s)	1308
NdeI	CATATG	1 cut(s)	286
NdeII	GATC	5 cut(s)	3, 443, 726, 825, 1312
NlaIII	CATG	6 cut(s)	473, 674, 917, 1025, 1312, 1505
NlaIV	GGNNCC	3 cut(s)	492, 896, 1158
NmeAIII	GCCGAG	1 cut(s)	733
NmuCI	GTSAC	1 cut(s)	1470
NsiI	ATGCAT	2 cut(s)	61, 286
PagI	TCATGA	1 cut(s)	913
PctI	GAATGC	2 cut(s)	61, 1003
PfeI	GAWTC	3 cut(s)	977, 1281, 1336
PkrI	GCNGC	5 cut(s)	28, 230, 654, 842, 985
PleI	GAGTC	2 cut(s)	1120, 1223
PpsI	GAGTC	2 cut(s)	1120, 1223
Ppu21I	YACGTR	2 cut(s)	559, 1488
PpuMI	RGGWCCY	1 cut(s)	894
PsiI	TTATAA	1 cut(s)	782
Psp5II	RGGWCCY	1 cut(s)	894
Psp6I	CCWGG	1 cut(s)	676
PspGI	CCWGG	1 cut(s)	676
PspN4I	GGNNCC	3 cut(s)	492, 896, 1158
PspPI	GGNCC	8 cut(s)	405, 473, 674, 763, 894, 1085, 1156, 1450
PspPPI	RGGWCCY	1 cut(s)	894
PstI	CTGCAG	1 cut(s)	985
PstNI	CAGNNNCTG	1 cut(s)	980
RsaI	GTAC	5 cut(s)	366, 374, 557, 750, 1126
RsaNI	GTAC	5 cut(s)	365, 373, 556, 749, 1125
RseI	CAYNNNNRTG	2 cut(s)	819, 1026
SaqAI	TTAA	7 cut(s)	177, 609, 1235, 1260, 1353, 1460, 1510
SatI	GCNGC	5 cut(s)	27, 229, 653, 841, 984
Sau3AI	GATC	5 cut(s)	3, 443, 726, 825, 1312
Sau96I	GGNCC	8 cut(s)	405, 473, 674, 763, 894, 1085, 1156, 1450
ScaI	AGTACT	1 cut(s)	374
SchI	GAGTC	2 cut(s)	1121, 1224
ScrFI	CCNGG	1 cut(s)	678
SduI	GDGCHC	1 cut(s)	564
SfaNI	GCATC	5 cut(s)	232, 240, 403, 677, 980
SfcI	CTRYAG	2 cut(s)	981, 1204
SinI	GGWCC	6 cut(s)	405, 473, 674, 894, 1085, 1156
SmiMI	CAYNNNNRTG	2 cut(s)	819, 1026
SmlI	CTYRAG	1 cut(s)	1409
SmoI	CTYRAG	1 cut(s)	1409
SpeI	ACTAGT	1 cut(s)	751
Sse9I	AATT	9 cut(s)	84, 119, 435, 611, 664, 696, 878, 1181, 1230
SspI	AATATT	1 cut(s)	175
SspMI	CTAG	3 cut(s)	579, 752, 1104
StyD4I	CCNGG	1 cut(s)	676
StyI	CCWWGG	3 cut(s)	235, 401, 1308
TaaI	ACNGT	2 cut(s)	377, 1498
TaiI	ACGT	2 cut(s)	561, 1490
TaqI	TCGA	4 cut(s)	342, 411, 771, 903
TasI	AATT	9 cut(s)	84, 119, 435, 611, 664, 696, 878, 1181, 1230
TatI	WGTACW	2 cut(s)	372, 1124
TfiI	GAWTC	3 cut(s)	977, 1281, 1336
Tru1I	TTAA	7 cut(s)	177, 609, 1235, 1260, 1353, 1460, 1510
Tru9I	TTAA	7 cut(s)	177, 609, 1235, 1260, 1353, 1460, 1510
TscAI	CASTG	1 cut(s)	328
TseFI	GTSAC	1 cut(s)	1470
TseI	GCWGC	5 cut(s)	26, 228, 652, 840, 983
Tsp45I	GTSAC	1 cut(s)	1470
TspGWI	ACGGA	1 cut(s)	465
TspRI	CASTG	1 cut(s)	328
VpaK11BI	GGWCC	6 cut(s)	405, 473, 674, 894, 1085, 1156
XagI	CCTNNNNNAGG	2 cut(s)	681, 889
XapI	RAATTY	6 cut(s)	84, 119, 611, 696, 878, 1230
XmiI	GTMKAC	1 cut(s)	1203
XspI	CTAG	3 cut(s)	579, 752, 1104
ZrmI	AGTACT	1 cut(s)	374
Zsp2I	ATGCAT	2 cut(s)	61, 286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.