FvH4_6g30950

F-box kelch-repeat protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
24118010 .. 24119053
1044 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g30950.t1

Sequence Viewer

Length: 1044 bp
ATGGAGCAGCTGATTCCTGGTTTGCCTAATGATGTTGCTCGAGATTGCTTGTTTCGTGTACCCTACAATTATCTGTCTGATGCTGCTTATGTATGCAAAGTCTGGAACCAGGAGATTGAGCATCCGGACTTTCTCCGGCTGCGAAAAGCCACCGGCCGTAGTCAGGCCATCGTTGTAATGGCACAAGCACGGGTTAACCCCAACCCGGGTCGTCCTACTATGCCGGAGTTTAAGCTCTCAGTTTTTGAACCCAAGACGAGCAGCTGGGAGGAGCTGCCACTGTTCCCTGGGTTTTGTAAAGGGCTGCTGCCTAGGTTTTGCCAAGTGGTCGGAGTCGGGTCGGATTTGGTTGTGATGGGCGGGTTGGATCCATGCACTTGGGAAGTGTCTAATAGTGTGTTTATTTTCAACTTTGTGTCGGCCACTTGGCGGAGCGGAGCGGACATGCCAGGTGTCAAGAGGTCGTTCTTCGGATGTGCTTCCGGTGATGATAATCGGACGGTGTTTGTTGTCGGTGGACACGACAATAAGAAGAATGCGTTACGATCGGCAATGGCTTATGATGTGGCTAAAAACAAGTGGAATGTAATGGCTGACATGGAAAAAGAACATGATGAATGTAAGGCGATATTCTACCGTGGCAAGCTCCACGTCATTGGCGGATACCAAACGGAAAGACAAGGCCAATTTGAAAGGAGTGCAGAGACCTTTGATCCCGTCACTTCCAAATGGGACAAGGTGAAGGAGGATTTCTTGCCTGCCAATGTGTCTCCCAAGTCCTGTGTGGCAGGCCACGATGGAAAACTTTACATGTCTTCGGAGAGCCATGTGGTGGTATGTGACGGTGCGACATGGCAAGCGGTTTCTGAGGTACCGGCTGATGTAGGTTCTGCGACCACTTGGCAGGACAAGCTGTTGGTGACTGGGTCTGGTGAGCTCCAAACGGCTTATATTCTTGATTTGTATAGCTACTCCTGGACAAAACTAGAGATGCCTGAGGAGTATAGAGGTCATGTTTACTCGAGCTGTAACTTGGATATATAG

Protein Analysis

348

Amino Acids

38.76

Weight (kDa)

5.59

Isoelectric Point (pI)

43.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_ATRN-LZTR1 PF24981 80 - 257 4.5e-11 Attractin/LZTR1 beta-propeller
Kelch_FKB95 PF25210 104 - 206 2.3e-09 FKB95, Kelch-repeats domain
Kelch_1 PF01344 106 - 150 4.1e-07 Kelch motif
Kelch_KLHDC2_KLHL20_DRC7 PF24681 109 - 274 1.8e-12 KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_Calicin PF13964 115 - 247 1.6e-10 Calicin, beta-propeller domain
Beta-prop_FBX42 PF13415 159 - 264 2.1e-07 FBX42, beta-propeller domain
Kelch_1 PF01344 165 - 200 3.9e-08 Kelch motif
Kelch_FKB95 PF25210 168 - 286 4.5e-12 FKB95, Kelch-repeats domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 871
AccB1I GGYRCC 1 cut(s) 871
AccB7I CCANNNNNTGG 1 cut(s) 832
AccBSI CCGCTC 2 cut(s) 435, 440
AccIII TCCGGA 1 cut(s) 124
AciI CCGC 6 cut(s) 360, 430, 435, 440, 660, 860
AclWI GGATC 3 cut(s) 362, 375, 707
AcoI YGGCCR 2 cut(s) 154, 420
AfaI GTAC 2 cut(s) 60, 873
AfiI CCNNNNNNNGG 5 cut(s) 163, 205, 206, 429, 832
AflIII ACRYGT 1 cut(s) 810
AgsI TTSAA 3 cut(s) 248, 409, 692
AjiI CACGTC 1 cut(s) 652
AjnI CCWGG 5 cut(s) 16, 108, 286, 448, 974
AluBI AGCT 9 cut(s) 10, 235, 264, 274, 646, 913, 937, 969, 1026
AluI AGCT 9 cut(s) 10, 235, 264, 274, 646, 913, 937, 969, 1026
Alw21I GWGCWC 1 cut(s) 939
Alw26I GTCTC 2 cut(s) 698, 774
AlwI GGATC 3 cut(s) 362, 375, 707
Ama87I CYCGRG 3 cut(s) 39, 205, 1021
Aor13HI TCCGGA 1 cut(s) 124
AoxI GGCC 5 cut(s) 154, 165, 420, 682, 790
ApeKI GCWGC 7 cut(s) 7, 83, 139, 261, 274, 304, 307
Asp718I GGTACC 1 cut(s) 871
AspA2I CCTAGG 1 cut(s) 311
AsuC2I CCSGG 2 cut(s) 206, 207
AsuHPI GGTGA 4 cut(s) 497, 751, 931, 944
AvaI CYCGRG 3 cut(s) 39, 205, 1021
AvrII CCTAGG 1 cut(s) 311
AxyI CCTNAGG 1 cut(s) 996
BamHI GGATCC 1 cut(s) 367
BanI GGYRCC 1 cut(s) 871
BanII GRGCYC 1 cut(s) 939
BbsI GAAGAC 1 cut(s) 807
Bbv12I GWGCWC 1 cut(s) 939
BbvI GCAGC 7 cut(s) 19, 70, 126, 261, 273, 291, 294
BccI CCATC 3 cut(s) 176, 349, 791
BceAI ACGGC 2 cut(s) 141, 960
BciT130I CCWGG 5 cut(s) 18, 110, 288, 450, 976
BciVI GTATCC 1 cut(s) 656
BcnI CCSGG 2 cut(s) 206, 207
BcoDI GTCTC 2 cut(s) 698, 774
BfaI CTAG 2 cut(s) 312, 986
BfuI GTATCC 1 cut(s) 656
BisI GCNGC 7 cut(s) 8, 84, 140, 262, 275, 305, 308
BlnI CCTAGG 1 cut(s) 311
BlsI GCNGC 7 cut(s) 9, 85, 141, 263, 276, 306, 309
Bme1390I CCNGG 7 cut(s) 18, 110, 206, 207, 288, 450, 976
BmeT110I CYCGRG 3 cut(s) 39, 205, 1021
BmgBI CACGTC 1 cut(s) 652
BmiI GGNNCC 3 cut(s) 107, 369, 873
BmrFI CCNGG 7 cut(s) 18, 110, 206, 207, 288, 450, 976
BmrI ACTGGG 1 cut(s) 933
BmsI GCATC 3 cut(s) 70, 130, 981
BmuI ACTGGG 1 cut(s) 933
BpiI GAAGAC 1 cut(s) 807
BpuMI CCSGG 2 cut(s) 206, 207
BsaBI GATNNNNATC 1 cut(s) 492
BsaI GGTCTC 1 cut(s) 698
BsaJI CCNNGG 5 cut(s) 205, 286, 287, 311, 637
BsaWI WCCGGW 2 cut(s) 124, 482
Bsc4I CCNNNNNNNGG 5 cut(s) 163, 205, 206, 429, 832
Bse118I RCCGGY 2 cut(s) 152, 874
Bse1I ACTGG 1 cut(s) 928
Bse21I CCTNAGG 1 cut(s) 996
Bse3DI GCAATG 1 cut(s) 558
Bse8I GATNNNNATC 1 cut(s) 492
BseAI TCCGGA 1 cut(s) 124
BseBI CCWGG 5 cut(s) 18, 110, 288, 450, 976
BseDI CCNNGG 5 cut(s) 205, 286, 287, 311, 637
BseGI GGATG 2 cut(s) 121, 479
BseJI GATNNNNATC 1 cut(s) 492
BseLI CCNNNNNNNGG 5 cut(s) 163, 205, 206, 429, 832
BseMI GCAATG 1 cut(s) 558
BseMII CTCAG 3 cut(s) 252, 858, 987
BseNI ACTGG 1 cut(s) 928
BseRI GAGGAG 2 cut(s) 284, 1013
BseX3I CGGCCG 1 cut(s) 154
BseXI GCAGC 7 cut(s) 19, 70, 126, 261, 273, 291, 294
BseYI CCCAGC 1 cut(s) 264
BsgI GTGCAG 1 cut(s) 720
Bsh1285I CGRYCG 2 cut(s) 157, 548
BshFI GGCC 5 cut(s) 156, 167, 422, 684, 792
BshNI GGYRCC 1 cut(s) 871
BsiEI CGRYCG 2 cut(s) 157, 548
BsiHKAI GWGCWC 1 cut(s) 939
BsiHKCI CYCGRG 3 cut(s) 39, 205, 1021
BsiSI CCGG 7 cut(s) 125, 136, 153, 206, 224, 483, 875
BslFI GGGAC 1 cut(s) 746
BslI CCNNNNNNNGG 5 cut(s) 163, 205, 206, 429, 832
BsmAI GTCTC 2 cut(s) 698, 774
BsmFI GGGAC 1 cut(s) 746
BsmI GAATGC 1 cut(s) 541
BsnI GGCC 5 cut(s) 156, 167, 422, 684, 792
Bso31I GGTCTC 1 cut(s) 698
BsoBI CYCGRG 3 cut(s) 39, 205, 1021
Bsp1286I GDGCHC 1 cut(s) 939
Bsp13I TCCGGA 1 cut(s) 124
Bsp143I GATC 3 cut(s) 367, 545, 712
BspACI CCGC 6 cut(s) 360, 430, 435, 440, 660, 860
BspANI GGCC 5 cut(s) 156, 167, 422, 684, 792
BspCNI CTCAG 3 cut(s) 251, 859, 988
BspEI TCCGGA 1 cut(s) 124
BspLI GGNNCC 3 cut(s) 107, 369, 873
BspPI GGATC 3 cut(s) 362, 375, 707
BspT107I GGYRCC 1 cut(s) 871
BspTNI GGTCTC 1 cut(s) 698
BsrBI CCGCTC 2 cut(s) 435, 440
BsrDI GCAATG 1 cut(s) 558
BsrFI RCCGGY 2 cut(s) 152, 874
BsrI ACTGG 1 cut(s) 928
BssAI RCCGGY 2 cut(s) 152, 874
BssECI CCNNGG 5 cut(s) 205, 286, 287, 311, 637
BssMI GATC 3 cut(s) 367, 545, 712
BssT1I CCWWGG 1 cut(s) 311
Bst2UI CCWGG 5 cut(s) 18, 110, 288, 450, 976
Bst4CI ACNGT 4 cut(s) 282, 502, 638, 845
BstC8I GCNNGC 4 cut(s) 644, 759, 790, 858
BstDEI CTNAG 3 cut(s) 238, 867, 996
BstDSI CCRYGG 1 cut(s) 637
BstF5I GGATG 2 cut(s) 121, 479
BstKTI GATC 3 cut(s) 370, 548, 715
BstMAI GTCTC 2 cut(s) 698, 774
BstMBI GATC 3 cut(s) 367, 545, 712
BstMCI CGRYCG 2 cut(s) 157, 548
BstMWI GCNNNNNNNGC 1 cut(s) 910
BstNI CCWGG 5 cut(s) 18, 110, 288, 450, 976
BstNSI RCATGY 2 cut(s) 448, 814
BstSCI CCNGG 7 cut(s) 16, 108, 204, 205, 286, 448, 974
BstV1I GCAGC 7 cut(s) 19, 70, 126, 261, 273, 291, 294
BstV2I GAAGAC 1 cut(s) 807
BstX2I RGATCY 1 cut(s) 367
BstXI CCANNNNNNTGG 2 cut(s) 378, 656
BstYI RGATCY 1 cut(s) 367
BstZI CGGCCG 1 cut(s) 154
Bsu36I CCTNAGG 1 cut(s) 996
BsuI GTATCC 1 cut(s) 656
BsuRI GGCC 5 cut(s) 156, 167, 422, 684, 792
BtgI CCRYGG 1 cut(s) 637
BtrI CACGTC 1 cut(s) 652
BtsCI GGATG 2 cut(s) 121, 479
BtsIMutI CAGTG 1 cut(s) 278
Cac8I GCNNGC 4 cut(s) 644, 759, 790, 858
Cfr10I RCCGGY 2 cut(s) 152, 874
Cfr9I CCCGGG 1 cut(s) 205
Csp6I GTAC 2 cut(s) 59, 872
CviAII CATG 8 cut(s) 372, 445, 598, 611, 811, 827, 852, 1013
CviQI GTAC 2 cut(s) 59, 872
DdeI CTNAG 3 cut(s) 238, 867, 996
DpnI GATC 3 cut(s) 369, 547, 714
DpnII GATC 3 cut(s) 367, 545, 712
EaeI YGGCCR 2 cut(s) 154, 420
EagI CGGCCG 1 cut(s) 154
EciI GGCGGA 2 cut(s) 445, 675
Ecl136II GAGCTC 1 cut(s) 937
EclXI CGGCCG 1 cut(s) 154
Eco130I CCWWGG 1 cut(s) 311
Eco24I GRGCYC 1 cut(s) 939
Eco31I GGTCTC 1 cut(s) 698
Eco52I CGGCCG 1 cut(s) 154
Eco53kI GAGCTC 1 cut(s) 937
Eco81I CCTNAGG 1 cut(s) 996
Eco88I CYCGRG 3 cut(s) 39, 205, 1021
EcoICRI GAGCTC 1 cut(s) 937
EcoRII CCWGG 5 cut(s) 16, 108, 286, 448, 974
EcoT14I CCWWGG 1 cut(s) 311
EcoT38I GRGCYC 1 cut(s) 939
ErhI CCWWGG 1 cut(s) 311
FaeI CATG 8 cut(s) 375, 448, 601, 614, 814, 830, 855, 1016
FaqI GGGAC 1 cut(s) 746
FatI CATG 8 cut(s) 371, 444, 597, 610, 810, 826, 851, 1012
FauI CCCGC 1 cut(s) 353
Fnu4HI GCNGC 7 cut(s) 8, 84, 140, 262, 275, 305, 308
FokI GGATG 2 cut(s) 108, 486
FriOI GRGCYC 1 cut(s) 939
Fsp4HI GCNGC 7 cut(s) 8, 84, 140, 262, 275, 305, 308
FspBI CTAG 2 cut(s) 312, 986
GluI GCNGC 7 cut(s) 8, 84, 140, 262, 275, 305, 308
GsaI CCCAGC 1 cut(s) 268
HaeIII GGCC 5 cut(s) 156, 167, 422, 684, 792
HapII CCGG 7 cut(s) 125, 136, 153, 206, 224, 483, 875
Hin1II CATG 8 cut(s) 375, 448, 601, 614, 814, 830, 855, 1016
HincII GTYRAC 1 cut(s) 196
HindII GTYRAC 1 cut(s) 196
HinfI GANTC 2 cut(s) 13, 333
HpaI GTTAAC 1 cut(s) 196
HpaII CCGG 7 cut(s) 125, 136, 153, 206, 224, 483, 875
HphI GGTGA 4 cut(s) 497, 751, 931, 944
Hpy166II GTNNAC 4 cut(s) 59, 196, 518, 1018
Hpy188I TCNGA 7 cut(s) 79, 332, 343, 473, 498, 820, 868
Hpy188III TCNNGA 5 cut(s) 41, 103, 125, 457, 956
Hpy8I GTNNAC 4 cut(s) 59, 196, 518, 1018
HpyAV CCTTC 1 cut(s) 736
HpyCH4III ACNGT 4 cut(s) 282, 502, 638, 845
HpyCH4IV ACGT 1 cut(s) 651
HpyCH4V TGCA 3 cut(s) 96, 375, 701
HpyF10VI GCNNNNNNNGC 1 cut(s) 910
HpyF3I CTNAG 3 cut(s) 238, 867, 996
HpySE526I ACGT 1 cut(s) 651
Hsp92II CATG 8 cut(s) 375, 448, 601, 614, 814, 830, 855, 1016
Kpn2I TCCGGA 1 cut(s) 124
KpnI GGTACC 1 cut(s) 875
KspAI GTTAAC 1 cut(s) 196
Kzo9I GATC 3 cut(s) 367, 545, 712
LmnI GCTCC 6 cut(s) 4, 271, 432, 437, 651, 942
Lsp1109I GCAGC 7 cut(s) 19, 70, 126, 261, 273, 291, 294
LweI GCATC 3 cut(s) 70, 130, 981
MaeI CTAG 2 cut(s) 312, 986
MaeII ACGT 1 cut(s) 651
MaeIII GTNAC 5 cut(s) 540, 718, 839, 919, 1028
MalI GATC 3 cut(s) 369, 547, 714
MbiI CCGCTC 2 cut(s) 435, 440
MboI GATC 3 cut(s) 367, 545, 712
MboII GAAGA 3 cut(s) 460, 544, 807
MflI RGATCY 1 cut(s) 367
MhlI GDGCHC 1 cut(s) 939
MluCI AATT 2 cut(s) 67, 686
MlyI GAGTC 1 cut(s) 342
MmeI TCCRAC 3 cut(s) 310, 321, 345
MnlI CCTC 6 cut(s) 262, 453, 739, 862, 991, 1001
MroI TCCGGA 1 cut(s) 124
MseI TTAA 2 cut(s) 195, 231
MspA1I CMGCKG 2 cut(s) 10, 264
MspI CCGG 7 cut(s) 125, 136, 153, 206, 224, 483, 875
MspR9I CCNGG 7 cut(s) 18, 110, 206, 207, 288, 450, 976
Mva1269I GAATGC 1 cut(s) 541
MvaI CCWGG 5 cut(s) 18, 110, 288, 450, 976
MwoI GCNNNNNNNGC 1 cut(s) 910
NciI CCSGG 2 cut(s) 206, 207
NdeII GATC 3 cut(s) 367, 545, 712
NlaIII CATG 8 cut(s) 375, 448, 601, 614, 814, 830, 855, 1016
NlaIV GGNNCC 3 cut(s) 107, 369, 873
NmuCI GTSAC 3 cut(s) 718, 839, 919
NspI RCATGY 2 cut(s) 448, 814
PaeR7I CTCGAG 2 cut(s) 39, 1021
PasI CCCWGGG 1 cut(s) 287
PciI ACATGT 1 cut(s) 810
PcsI WCGNNNNNNNCGW 1 cut(s) 519
PctI GAATGC 1 cut(s) 541
PfeI GAWTC 1 cut(s) 13
PflFI GACNNNGTC 1 cut(s) 925
PflMI CCANNNNNTGG 1 cut(s) 832
PfoI TCCNGGA 1 cut(s) 974
PkrI GCNGC 7 cut(s) 9, 85, 141, 263, 276, 306, 309
Ple19I CGATCG 1 cut(s) 548
PleI GAGTC 1 cut(s) 341
PpsI GAGTC 1 cut(s) 341
PscI ACATGT 1 cut(s) 810
Psp124BI GAGCTC 1 cut(s) 939
Psp6I CCWGG 5 cut(s) 16, 108, 286, 448, 974
PspFI CCCAGC 1 cut(s) 264
PspGI CCWGG 5 cut(s) 16, 108, 286, 448, 974
PspN4I GGNNCC 3 cut(s) 107, 369, 873
PspXI VCTCGAGB 1 cut(s) 1021
PsuI RGATCY 1 cut(s) 367
PsyI GACNNNGTC 1 cut(s) 925
PvuI CGATCG 1 cut(s) 548
PvuII CAGCTG 2 cut(s) 10, 264
RsaI GTAC 2 cut(s) 60, 873
RsaNI GTAC 2 cut(s) 59, 872
SacI GAGCTC 1 cut(s) 939
SaqAI TTAA 2 cut(s) 195, 231
SatI GCNGC 7 cut(s) 8, 84, 140, 262, 275, 305, 308
Sau3AI GATC 3 cut(s) 367, 545, 712
SchI GAGTC 1 cut(s) 342
ScrFI CCNGG 7 cut(s) 18, 110, 206, 207, 288, 450, 976
SduI GDGCHC 1 cut(s) 939
SfaNI GCATC 3 cut(s) 70, 130, 981
Sfr274I CTCGAG 2 cut(s) 39, 1021
SlaI CTCGAG 2 cut(s) 39, 1021
SmaI CCCGGG 1 cut(s) 207
SmlI CTYRAG 2 cut(s) 39, 1021
SmoI CTYRAG 2 cut(s) 39, 1021
Sse9I AATT 2 cut(s) 67, 686
SsiI CCGC 6 cut(s) 360, 430, 435, 440, 660, 860
SspMI CTAG 2 cut(s) 312, 986
SstI GAGCTC 1 cut(s) 939
StyD4I CCNGG 7 cut(s) 16, 108, 204, 205, 286, 448, 974
StyI CCWWGG 1 cut(s) 311
TaaI ACNGT 4 cut(s) 282, 502, 638, 845
TaiI ACGT 1 cut(s) 654
TaqI TCGA 2 cut(s) 40, 1022
TasI AATT 2 cut(s) 67, 686
TfiI GAWTC 1 cut(s) 13
Tru1I TTAA 2 cut(s) 195, 231
Tru9I TTAA 2 cut(s) 195, 231
TscAI CASTG 1 cut(s) 285
TseFI GTSAC 3 cut(s) 718, 839, 919
TseI GCWGC 7 cut(s) 7, 83, 139, 261, 274, 304, 307
Tsp45I GTSAC 3 cut(s) 718, 839, 919
TspDTI ATGAA 1 cut(s) 630
TspGWI ACGGA 1 cut(s) 686
TspMI CCCGGG 1 cut(s) 205
TspRI CASTG 1 cut(s) 285
Tth111I GACNNNGTC 1 cut(s) 925
Van91I CCANNNNNTGG 1 cut(s) 832
XceI RCATGY 2 cut(s) 448, 814
XcmI CCANNNNNNNNNTGG 2 cut(s) 175, 781
XhoI CTCGAG 2 cut(s) 39, 1021
XmaI CCCGGG 1 cut(s) 205
XmaJI CCTAGG 1 cut(s) 311
XspI CTAG 2 cut(s) 312, 986
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.