Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0005673

Physical Location & Seq

Genomic Coordinates Reverse (-)

18420686 .. 18421749

Gene Structure 1064 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g20250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGCGCTGATTTCTGGCCTGCCGGATGATATAGCATATGACTGTCTAAGTCGTGTTGAATACGACCAGTTTCCGACAGTGGTATCGGTGTGTAAAGGGTGGAAGGCGGAGGTTGAGCTGCCGGAGTTTCTTCAGCATAGGAAGGTTGCTGGCCGCAGCCAAAGACTCATTGTGATGGTTCAAGCCCATGTGGTCTCAAACCATGGTGTCTTCAGAAGTCCGGATAGCCCGGTTTACCGGCTCACTATTTGTGAACCGGATTTGGGTAATTGGTCCGAGTTGCCTCTCCTAGCCGGTTTTGCCAATGGGCTACCCATGTTTTGCCAATTGGCAGCAGTTGGGTCCGATTTGGTGGTGATGGGTGGCTGGGACCCGCTTACGTGGACGATCTCGAAATCTGTGTTTATCTACAACTTTGTGTCCGGAGCGTGGCGGCGTGGGACTGACATGCCGGGTGATGGCAGGATATTCTTTGGGTGCGCGGCGGATTCGGAGCGGATGGTGTATGTTGCCGGCGGACATGACGACGAGAAGAATTGGATTCCGTTGCCTGATATGGCAAGAGAGCGTGACGAATGTAAGGCGATTTTCCAGGGTGGCAAACTCCACGTCATCGGTGGATATTGCACTGAAATGCAAGGACGTTTCGAGAGGAGCACCGAGACATTCAACATTTCCACGTGGCTGTGGAATCAAGTACAGGAGGGCTTCTTACAATTCGCCACTTGTCCACGGACATGTGTGGACGGTGACGATGAGACAATGTACATGTGTCGTGGCGATGATGTGGTACAGCAAAAACACAACACGTGGAAATTCGTGGCCAAGTTGCCTGCTCAGTTGCGTAATCCCGATTGCGTGACAGCGTGGCAGGGTAAAGTATTAGTGATGGGGAGTGCTGGGTTCGGTGAGCCCCACATGGCTTACGTACTGCATTTGGAAGATTACATGTGGACAAAACTAGAGACACCTCACAAGTACTCGGGCCATGTTCAATCAAGTTGTTATTTGGAGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009966 GO:0009968 GO:0009987 GO:0010498 GO:0010646 GO:0010648 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0023051 GO:0023057 GO:0030162 GO:0030163 GO:0031323 GO:0031461 GO:0031625 GO:0032991 GO:0043161 GO:0043170 GO:0043455 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080036 GO:0080037 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234 GO:2000762

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box Kelch_1 Kelch_6

Protein Analysis

340

Amino Acids

38.17

Weight (kDa)

5.38

Isoelectric Point (pI)

39.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kelch_FKB95	PF25210	104 - 180	4.6e-06	FKB95, Kelch-repeats domain
Kelch_1	PF01344	110 - 151	1.6e-08	Kelch motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15670 AT1G80440
fragaria_vesca	FvH4_6g30930 FvH4_6g30950
malus_domestica	MD17G1197600.v1.1
prunus_persica	Prupe.3G073600_v2.0.a1
pyrus_communis	pycom17g20250
rosa_chinensis	RchiOBHm_Chr2g0137541 RchiOBHm_Chr2g0137561
rosa_laevigata	RLG00000019660 RLG00000019661
rosa_multiflora	Rmu_co8224660.1_g000001 Rmu_sc0000765.1_g000013 Rmu_sc0038827.1_g000001
rosa_roxburghii	Rroxscaffold_2G00107020 Rroxscaffold_2G00107030
rosa_rugosa	Rorug02G0343100 Rorug02G0343400
rosa_samantha	Rh2AG390700 Rh2AG391100 Rh2BG398400 Rh2BG398600 Rh2CG377900 Rh2CG378100 Rh2DG413400 Rh2DG413500
rosa_wichuraiana	Rw2G032010 Rw2G032020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	496
AccII	CGCG	1 cut(s)	482
AccIII	TCCGGA	2 cut(s)	220, 422
AciI	CCGC	8 cut(s)	107, 154, 374, 433, 482, 485, 496, 516
AcoI	YGGCCR	2 cut(s)	151, 822
AcsI	RAATTY	1 cut(s)	815
AcuI	CTGAAG	2 cut(s)	116, 196
AcvI	CACGTG	2 cut(s)	681, 810
AfaI	GTAC	5 cut(s)	699, 767, 792, 930, 980
AfiI	CCNNNNNNNGG	3 cut(s)	263, 429, 458
AflIII	ACRYGT	4 cut(s)	737, 768, 807, 948
AgsI	TTSAA	4 cut(s)	59, 182, 670, 995
AjiI	CACGTC	1 cut(s)	610
AjnI	CCWGG	1 cut(s)	591
AluBI	AGCT	1 cut(s)	118
AluI	AGCT	1 cut(s)	118
Alw21I	GWGCWC	1 cut(s)	659
Alw26I	GTCTC	4 cut(s)	199, 656, 752, 959
Ama87I	CYCGRG	1 cut(s)	982
Aor13HI	TCCGGA	2 cut(s)	220, 422
AoxI	GGCC	4 cut(s)	16, 151, 822, 985
ApeKI	GCWGC	3 cut(s)	118, 156, 332
ApoI	RAATTY	1 cut(s)	815
ArsI	GACNNNNNNTTYG	2 cut(s)	594, 626
AspLEI	GCGC	2 cut(s)	7, 482
AspS9I	GGNCC	4 cut(s)	273, 342, 370, 985
AsuC2I	CCSGG	2 cut(s)	230, 453
AsuHPI	GGTGA	4 cut(s)	367, 467, 761, 920
AvaI	CYCGRG	1 cut(s)	982
AvaII	GGWCC	3 cut(s)	273, 342, 370
BaeI	ACNNNNGTAYC	2 cut(s)	66, 99
BalI	TGGCCA	1 cut(s)	824
BanII	GRGCYC	1 cut(s)	915
BbrPI	CACGTG	2 cut(s)	681, 810
BbsI	GAAGAC	1 cut(s)	202
Bbv12I	GWGCWC	1 cut(s)	659
BbvI	GCAGC	3 cut(s)	105, 168, 344
BccI	CCATC	5 cut(s)	169, 352, 452, 493, 883
BciT130I	CCWGG	1 cut(s)	593
BcnI	CCSGG	2 cut(s)	230, 453
BcoDI	GTCTC	4 cut(s)	199, 656, 752, 959
BfaI	CTAG	2 cut(s)	290, 962
BfoI	RGCGCY	1 cut(s)	8
BisI	GCNGC	6 cut(s)	119, 154, 157, 333, 434, 483
BlsI	GCNGC	6 cut(s)	120, 155, 158, 334, 435, 484
BmcAI	AGTACT	1 cut(s)	980
Bme1390I	CCNGG	3 cut(s)	230, 453, 593
Bme18I	GGWCC	3 cut(s)	273, 342, 370
BmeT110I	CYCGRG	1 cut(s)	982
BmgBI	CACGTC	1 cut(s)	610
BmgT120I	GGNCC	4 cut(s)	273, 342, 370, 985
BmiI	GGNNCC	3 cut(s)	343, 371, 372
BmrFI	CCNGG	3 cut(s)	230, 453, 593
BpiI	GAAGAC	1 cut(s)	202
BpuMI	CCSGG	2 cut(s)	230, 453
BsaAI	YACGTR	4 cut(s)	381, 681, 810, 928
BsaI	GGTCTC	1 cut(s)	199
BsaJI	CCNNGG	3 cut(s)	202, 592, 731
BsaWI	WCCGGW	3 cut(s)	220, 256, 422
Bsc4I	CCNNNNNNNGG	3 cut(s)	263, 429, 458
Bse118I	RCCGGY	3 cut(s)	237, 293, 512
Bse1I	ACTGG	1 cut(s)	67
BseAI	TCCGGA	2 cut(s)	220, 422
BseBI	CCWGG	1 cut(s)	593
BseDI	CCNNGG	3 cut(s)	202, 592, 731
BseGI	GGATG	2 cut(s)	31, 504
BseLI	CCNNNNNNNGG	3 cut(s)	263, 429, 458
BseMII	CTCAG	1 cut(s)	851
BseNI	ACTGG	1 cut(s)	67
BseRI	GAGGAG	1 cut(s)	667
BseXI	GCAGC	3 cut(s)	105, 168, 344
BseYI	CCCAGC	2 cut(s)	366, 899
Bsh1236I	CGCG	1 cut(s)	482
BshFI	GGCC	4 cut(s)	18, 153, 824, 987
BsiHKAI	GWGCWC	1 cut(s)	659
BsiHKCI	CYCGRG	1 cut(s)	982
BslFI	GGGAC	2 cut(s)	383, 454
BslI	CCNNNNNNNGG	3 cut(s)	263, 429, 458
BsmAI	GTCTC	4 cut(s)	199, 656, 752, 959
BsmFI	GGGAC	2 cut(s)	383, 454
BsnI	GGCC	4 cut(s)	18, 153, 824, 987
Bso31I	GGTCTC	1 cut(s)	199
BsoBI	CYCGRG	1 cut(s)	982
Bsp1286I	GDGCHC	2 cut(s)	659, 915
Bsp13I	TCCGGA	2 cut(s)	220, 422
Bsp1407I	TGTACA	1 cut(s)	765
Bsp143I	GATC	1 cut(s)	387
Bsp19I	CCATGG	1 cut(s)	202
BspACI	CCGC	8 cut(s)	107, 154, 374, 433, 482, 485, 496, 516
BspANI	GGCC	4 cut(s)	18, 153, 824, 987
BspCNI	CTCAG	1 cut(s)	850
BspEI	TCCGGA	2 cut(s)	220, 422
BspFNI	CGCG	1 cut(s)	482
BspLI	GGNNCC	3 cut(s)	343, 371, 372
BspTNI	GGTCTC	1 cut(s)	199
BsrBI	CCGCTC	1 cut(s)	496
BsrFI	RCCGGY	3 cut(s)	237, 293, 512
BsrGI	TGTACA	1 cut(s)	765
BsrI	ACTGG	1 cut(s)	67
BssAI	RCCGGY	3 cut(s)	237, 293, 512
BssECI	CCNNGG	3 cut(s)	202, 592, 731
BssMI	GATC	1 cut(s)	387
BssT1I	CCWWGG	1 cut(s)	202
Bst2UI	CCWGG	1 cut(s)	593
Bst4CI	ACNGT	3 cut(s)	44, 79, 749
BstAUI	TGTACA	1 cut(s)	765
BstBAI	YACGTR	4 cut(s)	381, 681, 810, 928
BstC8I	GCNNGC	4 cut(s)	20, 151, 514, 834
BstDEI	CTNAG	2 cut(s)	47, 837
BstDSI	CCRYGG	2 cut(s)	202, 731
BstF5I	GGATG	2 cut(s)	31, 504
BstFNI	CGCG	1 cut(s)	482
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	2 cut(s)	7, 482
BstKTI	GATC	1 cut(s)	390
BstMAI	GTCTC	4 cut(s)	199, 656, 752, 959
BstMBI	GATC	1 cut(s)	387
BstMWI	GCNNNNNNNGC	1 cut(s)	299
BstNI	CCWGG	1 cut(s)	593
BstNSI	RCATGY	4 cut(s)	451, 741, 772, 952
BstSCI	CCNGG	3 cut(s)	228, 451, 591
BstSNI	TACGTA	1 cut(s)	928
BstUI	CGCG	1 cut(s)	482
BstV1I	GCAGC	3 cut(s)	105, 168, 344
BstV2I	GAAGAC	1 cut(s)	202
BsuRI	GGCC	4 cut(s)	18, 153, 824, 987
BtgI	CCRYGG	2 cut(s)	202, 731
BtgZI	GCGATG	1 cut(s)	795
BtrI	CACGTC	1 cut(s)	610
BtsCI	GGATG	2 cut(s)	31, 504
BtsIMutI	CAGTG	2 cut(s)	84, 627
Cac8I	GCNNGC	4 cut(s)	20, 151, 514, 834
CfoI	GCGC	2 cut(s)	7, 482
Cfr10I	RCCGGY	3 cut(s)	237, 293, 512
Cfr13I	GGNCC	4 cut(s)	273, 342, 370, 985
Csp6I	GTAC	5 cut(s)	698, 766, 791, 929, 979
CviQI	GTAC	5 cut(s)	698, 766, 791, 929, 979
DdeI	CTNAG	2 cut(s)	47, 837
DpnI	GATC	1 cut(s)	389
DpnII	GATC	1 cut(s)	387
EaeI	YGGCCR	2 cut(s)	151, 822
EciI	GGCGGA	3 cut(s)	122, 500, 531
Eco105I	TACGTA	1 cut(s)	928
Eco130I	CCWWGG	1 cut(s)	202
Eco24I	GRGCYC	1 cut(s)	915
Eco31I	GGTCTC	1 cut(s)	199
Eco47I	GGWCC	3 cut(s)	273, 342, 370
Eco57I	CTGAAG	2 cut(s)	116, 196
Eco72I	CACGTG	2 cut(s)	681, 810
Eco88I	CYCGRG	1 cut(s)	982
EcoO109I	RGGNCCY	1 cut(s)	370
EcoRII	CCWGG	1 cut(s)	591
EcoT14I	CCWWGG	1 cut(s)	202
EcoT38I	GRGCYC	1 cut(s)	915
ErhI	CCWWGG	1 cut(s)	202
FaqI	GGGAC	2 cut(s)	383, 454
FauI	CCCGC	1 cut(s)	381
FauNDI	CATATG	1 cut(s)	37
Fnu4HI	GCNGC	6 cut(s)	119, 154, 157, 333, 434, 483
FokI	GGATG	2 cut(s)	38, 511
FriOI	GRGCYC	1 cut(s)	915
Fsp4HI	GCNGC	6 cut(s)	119, 154, 157, 333, 434, 483
FspBI	CTAG	2 cut(s)	290, 962
GlaI	GCGC	2 cut(s)	6, 481
GluI	GCNGC	6 cut(s)	119, 154, 157, 333, 434, 483
GsaI	CCCAGC	2 cut(s)	370, 903
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	4 cut(s)	18, 153, 824, 987
HhaI	GCGC	2 cut(s)	7, 482
Hin6I	GCGC	2 cut(s)	5, 480
HinP1I	GCGC	2 cut(s)	5, 480
HinfI	GANTC	4 cut(s)	165, 488, 541, 691
HphI	GGTGA	4 cut(s)	367, 467, 761, 920
Hpy166II	GTNNAC	6 cut(s)	235, 254, 384, 731, 745, 954
Hpy188I	TCNGA	5 cut(s)	75, 215, 277, 346, 493
Hpy188III	TCNNGA	5 cut(s)	221, 391, 423, 649, 851
Hpy8I	GTNNAC	6 cut(s)	235, 254, 384, 731, 745, 954
Hpy99I	CGWCG	1 cut(s)	530
HpyAV	CCTTC	2 cut(s)	97, 136
HpyCH4III	ACNGT	3 cut(s)	44, 79, 749
HpyCH4IV	ACGT	6 cut(s)	380, 609, 643, 680, 809, 927
HpyCH4V	TGCA	3 cut(s)	627, 637, 934
HpyF10VI	GCNNNNNNNGC	1 cut(s)	299
HpyF3I	CTNAG	2 cut(s)	47, 837
HpySE526I	ACGT	6 cut(s)	380, 609, 643, 680, 809, 927
HspAI	GCGC	2 cut(s)	5, 480
KflI	GGGWCCC	1 cut(s)	370
Kpn2I	TCCGGA	2 cut(s)	220, 422
KroI	GCCGGC	1 cut(s)	512
KroNI	GCCGGC	1 cut(s)	514
Kzo9I	GATC	1 cut(s)	387
LmnI	GCTCC	3 cut(s)	425, 493, 654
Lsp1109I	GCAGC	3 cut(s)	105, 168, 344
MaeI	CTAG	2 cut(s)	290, 962
MaeII	ACGT	6 cut(s)	380, 609, 643, 680, 809, 927
MaeIII	GTNAC	3 cut(s)	569, 749, 859
MalI	GATC	1 cut(s)	389
MbiI	CCGCTC	1 cut(s)	496
MboI	GATC	1 cut(s)	387
MboII	GAAGA	4 cut(s)	122, 202, 544, 953
MfeI	CAATTG	1 cut(s)	326
MhlI	GDGCHC	2 cut(s)	659, 915
MlsI	TGGCCA	1 cut(s)	824
MluCI	AATT	5 cut(s)	268, 326, 535, 716, 815
MluNI	TGGCCA	1 cut(s)	824
MlyI	GAGTC	1 cut(s)	159
MmeI	TCCRAC	1 cut(s)	98
MnlI	CCTC	6 cut(s)	103, 294, 645, 697, 981, 1006
Mox20I	TGGCCA	1 cut(s)	824
MroI	TCCGGA	2 cut(s)	220, 422
MroNI	GCCGGC	1 cut(s)	512
MscI	TGGCCA	1 cut(s)	824
MslI	CAYNNNNRTG	3 cut(s)	173, 632, 736
Msp20I	TGGCCA	1 cut(s)	824
MspR9I	CCNGG	3 cut(s)	230, 453, 593
MunI	CAATTG	1 cut(s)	326
MvaI	CCWGG	1 cut(s)	593
MvnI	CGCG	1 cut(s)	482
MwoI	GCNNNNNNNGC	1 cut(s)	299
NaeI	GCCGGC	1 cut(s)	514
NciI	CCSGG	2 cut(s)	230, 453
NcoI	CCATGG	1 cut(s)	202
NdeI	CATATG	1 cut(s)	37
NdeII	GATC	1 cut(s)	387
NgoMIV	GCCGGC	1 cut(s)	512
NlaIV	GGNNCC	3 cut(s)	343, 371, 372
NmuCI	GTSAC	3 cut(s)	569, 749, 859
NspI	RCATGY	4 cut(s)	451, 741, 772, 952
PciI	ACATGT	3 cut(s)	737, 768, 948
PdiI	GCCGGC	1 cut(s)	514
PfeI	GAWTC	3 cut(s)	488, 541, 691
PkrI	GCNGC	6 cut(s)	120, 155, 158, 334, 435, 484
PleI	GAGTC	1 cut(s)	159
PmaCI	CACGTG	2 cut(s)	681, 810
PmlI	CACGTG	2 cut(s)	681, 810
PpsI	GAGTC	1 cut(s)	159
Ppu21I	YACGTR	4 cut(s)	381, 681, 810, 928
PpuMI	RGGWCCY	1 cut(s)	370
PscI	ACATGT	3 cut(s)	737, 768, 948
Psp5II	RGGWCCY	1 cut(s)	370
Psp6I	CCWGG	1 cut(s)	591
PspCI	CACGTG	2 cut(s)	681, 810
PspFI	CCCAGC	2 cut(s)	366, 899
PspGI	CCWGG	1 cut(s)	591
PspN4I	GGNNCC	3 cut(s)	343, 371, 372
PspPI	GGNCC	4 cut(s)	273, 342, 370, 985
PspPPI	RGGWCCY	1 cut(s)	370
RsaI	GTAC	5 cut(s)	699, 767, 792, 930, 980
RsaNI	GTAC	5 cut(s)	698, 766, 791, 929, 979
RseI	CAYNNNNRTG	3 cut(s)	173, 632, 736
SatI	GCNGC	6 cut(s)	119, 154, 157, 333, 434, 483
Sau3AI	GATC	1 cut(s)	387
Sau96I	GGNCC	4 cut(s)	273, 342, 370, 985
ScaI	AGTACT	1 cut(s)	980
SchI	GAGTC	1 cut(s)	159
ScrFI	CCNGG	3 cut(s)	230, 453, 593
SduI	GDGCHC	2 cut(s)	659, 915
SinI	GGWCC	3 cut(s)	273, 342, 370
SmiMI	CAYNNNNRTG	3 cut(s)	173, 632, 736
SnaBI	TACGTA	1 cut(s)	928
Sse9I	AATT	5 cut(s)	268, 326, 535, 716, 815
SsiI	CCGC	8 cut(s)	107, 154, 374, 433, 482, 485, 496, 516
SspMI	CTAG	2 cut(s)	290, 962
StyD4I	CCNGG	3 cut(s)	228, 451, 591
StyI	CCWWGG	1 cut(s)	202
TaaI	ACNGT	3 cut(s)	44, 79, 749
TaiI	ACGT	6 cut(s)	383, 612, 646, 683, 812, 930
TaqI	TCGA	2 cut(s)	392, 648
TasI	AATT	5 cut(s)	268, 326, 535, 716, 815
TatI	WGTACW	3 cut(s)	697, 765, 978
TauI	GCSGC	3 cut(s)	156, 436, 485
TfiI	GAWTC	3 cut(s)	488, 541, 691
TscAI	CASTG	2 cut(s)	84, 634
TseFI	GTSAC	3 cut(s)	569, 749, 859
TseI	GCWGC	3 cut(s)	118, 156, 332
Tsp45I	GTSAC	3 cut(s)	569, 749, 859
TspGWI	ACGGA	2 cut(s)	534, 748
TspRI	CASTG	2 cut(s)	84, 634
VpaK11BI	GGWCC	3 cut(s)	273, 342, 370
XapI	RAATTY	1 cut(s)	815
XceI	RCATGY	4 cut(s)	451, 741, 772, 952
XcmI	CCANNNNNNNNNTGG	1 cut(s)	614
XspI	CTAG	2 cut(s)	290, 962
ZrmI	AGTACT	1 cut(s)	980

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.