AT1G80440

kelch repeat-containing F-box family protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
30241452 .. 30243176
1725 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G80440.1

Sequence Viewer

Length: 1065 bp
ATGGAACTTATCCCCAATCTTCCCGACGACGTTGCTCGCGAGTGTCTCCTTCGCTCCTCCTACCAACAGTTCCCTGTCATCGCCTCCGTTTGCAGAGCCTGGAACCGTGAAGTCTCTCTCTCTCAGTTTTTACATCAGCGAAAAGCTTCACGCCATAGCCAAGAGCTTCTTATTCTGTCTCAGGCTCGTGTCGACCCCGCTGGATCCGGAAAGATCATCGCTACGCCTGAATACCGGATCTCTGTTCTCGAATCCGGGTCGGGTCTTTGGACGGAGCTTCCTCCGATTCCTGGTCAAACCAAAGGACTTCCTCTGTTCTGCAGATTGGTTTCCGTTGGATCCGATCTTATTGTCTTGGGTGGGCTTGACCCGATTACGTGGCAGGCCCATGATTCGGTATTCGTCTTCAGTTTTCTCACTTCCAAATGGCGCGTGGGGGCAACCATGCCAGGTGTACGGAGGTCCTTCTTCGGATGCGCTTCGGATTCGGATCGGACGGTGCTGGTTGCGGGTGGACACAACGAAGAGAAATGTGCGCTTACGTCAGCTATGGTGTATGACGTGTCAGAAGACAAGTGGACGTTTTTGCCGGATATGGCGCGGGAACGAGACGAGTGCAAAGCGGTATTCCATGCTGGCAGATTCCACGTCATCGGTGGATATGCCACTGAGGAACAGGGGCAGTTTAGTAAAACAGCCGAATCGTTCGATGTGTCTACGTGGGAGTGGGGTCCACTTACGGAGGACTTCCTCGACGACACCGGCGATACCGTTAGCCCTCCGACCTGCGTCGCCGGTGGGGATTTGTACGCGTGCTGGGGTGGCGATGTGATGATGTTTCTAAATGACAAGTGGCAAAAGGTGGGCCAGATCCCTGCTGATGTGTACAATGTTACTTACGTAGCGGTGAGGCCCGGGATGCTGATTGTGATCGGCAACGGGAAGGCGTTGGCTGGATACGGTGAAGCCACCGTAGGGTATATATGTGATTTAAGTAGCTCACGATGGGTAAAATTGGAAACACACGGTGGTCATGTTCAAGCTGGCTGCTTCTTGGAGGTCTAA

Protein Analysis

354

Amino Acids

38.81

Weight (kDa)

5.14

Isoelectric Point (pI)

37.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Kelch_FKB95 PF25210 93 - 195 8.2e-07 FKB95, Kelch-repeats domain
Kelch_1 PF01344 107 - 150 2.3e-07 Kelch motif
Kelch_KLHDC2_KLHL20_DRC7 PF24681 109 - 285 6.2e-13 KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_ATRN-LZTR1 PF24981 114 - 249 4.4e-08 Attractin/LZTR1 beta-propeller
Beta-prop_Calicin PF13964 117 - 238 2.5e-06 Calicin, beta-propeller domain
Kelch_1 PF01344 164 - 199 1.3e-07 Kelch motif
Kelch_FKB95 PF25210 180 - 278 4e-08 FKB95, Kelch-repeats domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 794
AccI GTMKAC 2 cut(s) 192, 716
AccII CGCG 4 cut(s) 39, 432, 601, 812
AccIII TCCGGA 1 cut(s) 206
AciI CCGC 5 cut(s) 198, 509, 601, 623, 905
AclWI GGATC 7 cut(s) 198, 211, 245, 333, 346, 498, 865
AcuI CTGAAG 1 cut(s) 391
AdeI CACNNNGTG 1 cut(s) 1028
AfaI GTAC 3 cut(s) 456, 809, 887
AfiI CCNNNNNNNGG 3 cut(s) 290, 394, 975
AflIII ACRYGT 2 cut(s) 561, 810
AgsI TTSAA 1 cut(s) 1040
AjiI CACGTC 2 cut(s) 562, 649
AjnI CCWGG 3 cut(s) 98, 289, 448
AluBI AGCT 6 cut(s) 146, 166, 277, 548, 999, 1043
AluI AGCT 6 cut(s) 146, 166, 277, 548, 999, 1043
Alw26I GTCTC 4 cut(s) 50, 118, 183, 603
AlwI GGATC 7 cut(s) 198, 211, 245, 333, 346, 498, 865
AlwNI CAGNNNCTG 1 cut(s) 99
Ama87I CYCGRG 1 cut(s) 914
Aor13HI TCCGGA 1 cut(s) 206
AoxI GGCC 3 cut(s) 384, 865, 911
ApeKI GCWGC 1 cut(s) 1047
Asp700I GAANNNNTTC 1 cut(s) 145
AspLEI GCGC 4 cut(s) 432, 479, 538, 601
AspS9I GGNCC 5 cut(s) 385, 462, 731, 865, 912
AsuC2I CCSGG 3 cut(s) 256, 915, 916
AsuHPI GGTGA 2 cut(s) 919, 974
AvaI CYCGRG 1 cut(s) 914
AvaII GGWCC 2 cut(s) 462, 731
BamHI GGATCC 2 cut(s) 203, 338
BauI CACGAG 1 cut(s) 186
BbsI GAAGAC 2 cut(s) 397, 576
BbvI GCAGC 1 cut(s) 1034
BccI CCATC 1 cut(s) 999
BcgI CGANNNNNNTGC 4 cut(s) 14, 48, 597, 631
BciT130I CCWGG 3 cut(s) 100, 291, 450
BciVI GTATCC 1 cut(s) 950
BcnI CCSGG 3 cut(s) 256, 915, 916
BcoDI GTCTC 4 cut(s) 50, 118, 183, 603
BfmI CTRYAG 1 cut(s) 319
BfuAI ACCTGC 1 cut(s) 794
BfuI GTATCC 1 cut(s) 950
BisI GCNGC 1 cut(s) 1048
BlsI GCNGC 1 cut(s) 1049
Bme1390I CCNGG 6 cut(s) 100, 256, 291, 450, 915, 916
Bme18I GGWCC 2 cut(s) 462, 731
BmeT110I CYCGRG 1 cut(s) 914
BmgBI CACGTC 2 cut(s) 562, 649
BmgT120I GGNCC 5 cut(s) 385, 462, 731, 865, 912
BmiI GGNNCC 4 cut(s) 104, 205, 340, 732
BmrFI CCNGG 6 cut(s) 100, 256, 291, 450, 915, 916
BmsI GCATC 2 cut(s) 464, 909
BoxI GACNNNNGTC 1 cut(s) 788
BpiI GAAGAC 2 cut(s) 397, 576
BpuMI CCSGG 3 cut(s) 256, 915, 916
BsaAI YACGTR 3 cut(s) 378, 720, 901
BsaBI GATNNNNATC 2 cut(s) 489, 929
BsaJI CCNNGG 1 cut(s) 914
BsaWI WCCGGW 2 cut(s) 206, 234
Bsc4I CCNNNNNNNGG 3 cut(s) 290, 394, 975
Bse118I RCCGGY 2 cut(s) 761, 794
Bse8I GATNNNNATC 2 cut(s) 489, 929
BseAI TCCGGA 1 cut(s) 206
BseBI CCWGG 3 cut(s) 100, 291, 450
BseDI CCNNGG 1 cut(s) 914
BseGI GGATG 2 cut(s) 479, 924
BseJI GATNNNNATC 2 cut(s) 489, 929
BseLI CCNNNNNNNGG 3 cut(s) 290, 394, 975
BseMII CTCAG 3 cut(s) 137, 194, 660
BseRI GAGGAG 1 cut(s) 46
BseXI GCAGC 1 cut(s) 1034
BseYI CCCAGC 1 cut(s) 816
Bsh1236I CGCG 4 cut(s) 39, 432, 601, 812
BshFI GGCC 3 cut(s) 386, 867, 913
BsiHKCI CYCGRG 1 cut(s) 914
BsiSI CCGG 7 cut(s) 207, 235, 255, 590, 762, 795, 915
BslI CCNNNNNNNGG 3 cut(s) 290, 394, 975
BsmAI GTCTC 4 cut(s) 50, 118, 183, 603
BsmBI CGTCTC 1 cut(s) 603
BsnI GGCC 3 cut(s) 386, 867, 913
BsoBI CYCGRG 1 cut(s) 914
Bsp13I TCCGGA 1 cut(s) 206
Bsp1407I TGTACA 1 cut(s) 885
Bsp143I GATC 8 cut(s) 203, 213, 237, 338, 343, 490, 870, 930
Bsp68I TCGCGA 1 cut(s) 39
BspACI CCGC 5 cut(s) 198, 509, 601, 623, 905
BspANI GGCC 3 cut(s) 386, 867, 913
BspCNI CTCAG 3 cut(s) 136, 193, 661
BspEI TCCGGA 1 cut(s) 206
BspFNI CGCG 4 cut(s) 39, 432, 601, 812
BspLI GGNNCC 4 cut(s) 104, 205, 340, 732
BspMAI CTGCAG 1 cut(s) 323
BspMI ACCTGC 1 cut(s) 794
BspPI GGATC 7 cut(s) 198, 211, 245, 333, 346, 498, 865
BsrFI RCCGGY 2 cut(s) 761, 794
BsrGI TGTACA 1 cut(s) 885
BssAI RCCGGY 2 cut(s) 761, 794
BssECI CCNNGG 1 cut(s) 914
BssMI GATC 8 cut(s) 203, 213, 237, 338, 343, 490, 870, 930
BssSI CACGAG 1 cut(s) 186
Bst2BI CACGAG 1 cut(s) 186
Bst2UI CCWGG 3 cut(s) 100, 291, 450
Bst4CI ACNGT 7 cut(s) 69, 107, 499, 772, 962, 973, 1028
Bst6I CTCTTC 1 cut(s) 519
BstAUI TGTACA 1 cut(s) 885
BstBAI YACGTR 3 cut(s) 378, 720, 901
BstC8I GCNNGC 5 cut(s) 37, 384, 637, 814, 1045
BstDEI CTNAG 3 cut(s) 123, 180, 669
BstF5I GGATG 2 cut(s) 479, 924
BstFNI CGCG 4 cut(s) 39, 432, 601, 812
BstHHI GCGC 4 cut(s) 432, 479, 538, 601
BstKTI GATC 8 cut(s) 206, 216, 240, 341, 346, 493, 873, 933
BstMAI GTCTC 4 cut(s) 50, 118, 183, 603
BstMBI GATC 8 cut(s) 203, 213, 237, 338, 343, 490, 870, 930
BstMWI GCNNNNNNNGC 2 cut(s) 822, 919
BstNI CCWGG 3 cut(s) 100, 291, 450
BstPAI GACNNNNGTC 1 cut(s) 788
BstSCI CCNGG 6 cut(s) 98, 254, 289, 448, 913, 914
BstSFI CTRYAG 1 cut(s) 319
BstSNI TACGTA 1 cut(s) 901
BstUI CGCG 4 cut(s) 39, 432, 601, 812
BstV1I GCAGC 1 cut(s) 1034
BstV2I GAAGAC 2 cut(s) 397, 576
BstX2I RGATCY 4 cut(s) 203, 237, 338, 870
BstYI RGATCY 4 cut(s) 203, 237, 338, 870
BsuI GTATCC 1 cut(s) 950
BsuRI GGCC 3 cut(s) 386, 867, 913
BtgZI GCGATG 3 cut(s) 64, 202, 840
BtrI CACGTC 2 cut(s) 562, 649
BtsCI GGATG 2 cut(s) 479, 924
BtsIMutI CAGTG 1 cut(s) 666
BtuMI TCGCGA 1 cut(s) 39
BveI ACCTGC 1 cut(s) 794
Cac8I GCNNGC 5 cut(s) 37, 384, 637, 814, 1045
CaiI CAGNNNCTG 1 cut(s) 99
CfoI GCGC 4 cut(s) 432, 479, 538, 601
Cfr10I RCCGGY 2 cut(s) 761, 794
Cfr13I GGNCC 5 cut(s) 385, 462, 731, 865, 912
Cfr9I CCCGGG 1 cut(s) 914
CseI GACGC 1 cut(s) 778
Csp6I GTAC 3 cut(s) 455, 808, 886
CviAII CATG 4 cut(s) 389, 445, 632, 1034
CviQI GTAC 3 cut(s) 455, 808, 886
DdeI CTNAG 3 cut(s) 123, 180, 669
DpnI GATC 8 cut(s) 205, 215, 239, 340, 345, 492, 872, 932
DpnII GATC 8 cut(s) 203, 213, 237, 338, 343, 490, 870, 930
DraIII CACNNNGTG 1 cut(s) 1028
Eam1104I CTCTTC 1 cut(s) 519
EarI CTCTTC 1 cut(s) 519
Eco105I TACGTA 1 cut(s) 901
Eco47I GGWCC 2 cut(s) 462, 731
Eco57I CTGAAG 1 cut(s) 391
Eco88I CYCGRG 1 cut(s) 914
EcoO109I RGGNCCY 1 cut(s) 462
EcoRII CCWGG 3 cut(s) 98, 289, 448
Esp3I CGTCTC 1 cut(s) 603
FaeI CATG 4 cut(s) 392, 448, 635, 1037
FalI AAGNNNNNCTT 2 cut(s) 153, 185
FatI CATG 4 cut(s) 388, 444, 631, 1033
FauI CCCGC 3 cut(s) 205, 502, 594
FblI GTMKAC 2 cut(s) 192, 716
Fnu4HI GCNGC 1 cut(s) 1048
FokI GGATG 2 cut(s) 486, 931
Fsp4HI GCNGC 1 cut(s) 1048
GlaI GCGC 4 cut(s) 431, 478, 537, 600
GluI GCNGC 1 cut(s) 1048
GsaI CCCAGC 1 cut(s) 820
HaeIII GGCC 3 cut(s) 386, 867, 913
HapII CCGG 7 cut(s) 207, 235, 255, 590, 762, 795, 915
HgaI GACGC 1 cut(s) 778
HhaI GCGC 4 cut(s) 432, 479, 538, 601
Hin1II CATG 4 cut(s) 392, 448, 635, 1037
Hin6I GCGC 4 cut(s) 430, 477, 536, 599
HinP1I GCGC 4 cut(s) 430, 477, 536, 599
HincII GTYRAC 1 cut(s) 193
HindII GTYRAC 1 cut(s) 193
HindIII AAGCTT 1 cut(s) 144
HinfI GANTC 6 cut(s) 251, 286, 392, 485, 642, 701
HpaII CCGG 7 cut(s) 207, 235, 255, 590, 762, 795, 915
HphI GGTGA 2 cut(s) 919, 974
Hpy166II GTNNAC 7 cut(s) 193, 455, 515, 579, 717, 734, 886
Hpy188I TCNGA 8 cut(s) 285, 343, 473, 484, 490, 495, 568, 783
Hpy188III TCNNGA 5 cut(s) 23, 38, 207, 248, 1002
Hpy8I GTNNAC 7 cut(s) 193, 455, 515, 579, 717, 734, 886
Hpy99I CGWCG 4 cut(s) 29, 32, 758, 794
HpyAV CCTTC 3 cut(s) 59, 475, 937
HpyCH4III ACNGT 7 cut(s) 69, 107, 499, 772, 962, 973, 1028
HpyCH4IV ACGT 8 cut(s) 30, 377, 542, 561, 581, 648, 719, 900
HpyCH4V TGCA 3 cut(s) 93, 321, 618
HpyF10VI GCNNNNNNNGC 2 cut(s) 822, 919
HpyF3I CTNAG 3 cut(s) 123, 180, 669
HpySE526I ACGT 8 cut(s) 30, 377, 542, 561, 581, 648, 719, 900
Hsp92II CATG 4 cut(s) 392, 448, 635, 1037
HspAI GCGC 4 cut(s) 430, 477, 536, 599
Kpn2I TCCGGA 1 cut(s) 206
Kzo9I GATC 8 cut(s) 203, 213, 237, 338, 343, 490, 870, 930
LmnI GCTCC 2 cut(s) 59, 274
Lsp1109I GCAGC 1 cut(s) 1034
LweI GCATC 2 cut(s) 464, 909
MaeII ACGT 8 cut(s) 30, 377, 542, 561, 581, 648, 719, 900
MaeIII GTNAC 1 cut(s) 892
MalI GATC 8 cut(s) 205, 215, 239, 340, 345, 492, 872, 932
MboI GATC 8 cut(s) 203, 213, 237, 338, 343, 490, 870, 930
MboII GAAGA 5 cut(s) 11, 397, 460, 536, 581
MflI RGATCY 4 cut(s) 203, 237, 338, 870
MluCI AATT 1 cut(s) 1013
MluI ACGCGT 1 cut(s) 810
MmeI TCCRAC 2 cut(s) 316, 806
MroI TCCGGA 1 cut(s) 206
MroXI GAANNNNTTC 1 cut(s) 145
MseI TTAA 1 cut(s) 992
MspA1I CMGCKG 1 cut(s) 200
MspI CCGG 7 cut(s) 207, 235, 255, 590, 762, 795, 915
MspR9I CCNGG 6 cut(s) 100, 256, 291, 450, 915, 916
MvaI CCWGG 3 cut(s) 100, 291, 450
MvnI CGCG 4 cut(s) 39, 432, 601, 812
MwoI GCNNNNNNNGC 2 cut(s) 822, 919
NciI CCSGG 3 cut(s) 256, 915, 916
NdeII GATC 8 cut(s) 203, 213, 237, 338, 343, 490, 870, 930
NlaIII CATG 4 cut(s) 392, 448, 635, 1037
NlaIV GGNNCC 4 cut(s) 104, 205, 340, 732
NruI TCGCGA 1 cut(s) 39
PcsI WCGNNNNNNNCGW 2 cut(s) 36, 762
PdmI GAANNNNTTC 1 cut(s) 145
PfeI GAWTC 6 cut(s) 251, 286, 392, 485, 642, 701
PkrI GCNGC 1 cut(s) 1049
Ppu21I YACGTR 3 cut(s) 378, 720, 901
PpuMI RGGWCCY 1 cut(s) 462
PshAI GACNNNNGTC 1 cut(s) 788
Psp5II RGGWCCY 1 cut(s) 462
Psp6I CCWGG 3 cut(s) 98, 289, 448
PspFI CCCAGC 1 cut(s) 816
PspGI CCWGG 3 cut(s) 98, 289, 448
PspN4I GGNNCC 4 cut(s) 104, 205, 340, 732
PspPI GGNCC 5 cut(s) 385, 462, 731, 865, 912
PspPPI RGGWCCY 1 cut(s) 462
PstI CTGCAG 1 cut(s) 323
PstNI CAGNNNCTG 1 cut(s) 99
PsuI RGATCY 4 cut(s) 203, 237, 338, 870
RruI TCGCGA 1 cut(s) 39
RsaI GTAC 3 cut(s) 456, 809, 887
RsaNI GTAC 3 cut(s) 455, 808, 886
SalI GTCGAC 1 cut(s) 191
SaqAI TTAA 1 cut(s) 992
SatI GCNGC 1 cut(s) 1048
Sau3AI GATC 8 cut(s) 203, 213, 237, 338, 343, 490, 870, 930
Sau96I GGNCC 5 cut(s) 385, 462, 731, 865, 912
ScrFI CCNGG 6 cut(s) 100, 256, 291, 450, 915, 916
SfaNI GCATC 2 cut(s) 464, 909
SfcI CTRYAG 1 cut(s) 319
SgrAI CRCCGGYG 2 cut(s) 761, 794
SinI GGWCC 2 cut(s) 462, 731
SmaI CCCGGG 1 cut(s) 916
SnaBI TACGTA 1 cut(s) 901
Sse9I AATT 1 cut(s) 1013
SsiI CCGC 5 cut(s) 198, 509, 601, 623, 905
StyD4I CCNGG 6 cut(s) 98, 254, 289, 448, 913, 914
TaaI ACNGT 7 cut(s) 69, 107, 499, 772, 962, 973, 1028
TaiI ACGT 8 cut(s) 33, 380, 545, 564, 584, 651, 722, 903
TaqI TCGA 4 cut(s) 192, 249, 708, 753
TasI AATT 1 cut(s) 1013
TatI WGTACW 1 cut(s) 885
TfiI GAWTC 6 cut(s) 251, 286, 392, 485, 642, 701
Tru1I TTAA 1 cut(s) 992
Tru9I TTAA 1 cut(s) 992
TscAI CASTG 1 cut(s) 673
TseI GCWGC 1 cut(s) 1047
TspGWI ACGGA 5 cut(s) 76, 287, 322, 472, 755
TspMI CCCGGG 1 cut(s) 914
TspRI CASTG 1 cut(s) 673
VpaK11BI GGWCC 2 cut(s) 462, 731
XcmI CCANNNNNNNNNTGG 2 cut(s) 430, 653
XmaI CCCGGG 1 cut(s) 914
XmiI GTMKAC 2 cut(s) 192, 716
XmnI GAANNNNTTC 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.