Rw2G032010

F-box kelch-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Forward (+)
52798723 .. 52800101
1379 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G032010.1

Sequence Viewer

Length: 1065 bp
ATGGTTTTGATTTCAGGTCTTCCTGATGAAGTAGTCTACGATTGTCTTATTCGTGTCAAGTATGATCAGTTTCCGACTATAACATCTGTTTCTAAAGGTTGGAAATCAGAGGTTGAGCTACCAGAGTTTCATCGCTTCAGAAAGAATGGTGGTTATGGCCAAAAGCTCATTGTGATGGTTCAAGCACGTGTTCCTCCCAACCAAGGTGTCTTCAAGTGCCTGAAAGAACCGCTGTACCGGTTCACCGTCTGTGAGCCGGATTCGGGTGATTGGGGAGAGTTCCCGCCAATTTCTGTTTTCCCCGGTGGGTCTCTACCAATGTTTTGCCAGTTTGCAGCGGTTGGGACCAACTTGGTGGTGGTCGGCGGTTTAGACCCGGTGACCTGGGCGAGCTGTAAATCGGTCTTCGTCTACAACTTCATGACTGCCACGTGGCGGCGCGGAACCGATATGCCGGGTGGGTCCCGCACTTTTTTTGGGTGTGCGTCTGACTCTAACCGGACGGTGTACGTCGCCGGCGGACACGATGGCGAGAAGAATGCATTGAGATCGGCAATGGCGTATGACGTGGCAAAAGACGAGTGGATTCTATTGCCTAACATGGAAAGAGAGTGCGACGAATGCAAGGTAGTTTTCCAGCATGGCAAGCTCCACGTCATTGGTGGCTATTGCACCGAAATGCAAGGCCGCTTTGAGAGAAGCGCCGAGACATTCAACACCTCCACATGGCAGTGGGATTGTGTACAAGAGGACTTCTTACAGATCAGCATGTGTCCACGCACCTGCGTCGCTGGCGATGACGGGGCAACGTACATGTGTCGCGATGGTAATGTGATCAAACAAACATGTGGCTTGTGGCAAACCGTGGCCGAGCTGCCAGCTCATGTGCGCAATCCGGCTACATTGACAGCGTGGCACGGTAAGCTATTAGTGATTGGATGTGCCGGGTTCGGTGAGCCCCACATGGCTTACATGTTTAATCTGGAAAATCACACCTGGAGTAAGGTAGATACCCCTGAGAAGTACTCTGGTCATGTACAATCAAGTTGCTATTTGGAGATTTAG

Protein Analysis

354

Amino Acids

39.58

Weight (kDa)

5.75

Isoelectric Point (pI)

35.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Kelch_FKB95 PF25210 104 - 208 2.3e-09 FKB95, Kelch-repeats domain
Kelch_1 PF01344 111 - 152 5.7e-08 Kelch motif
Kelch_KLHDC2_KLHL20_DRC7 PF24681 111 - 249 2.2e-10 KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_ATRN-LZTR1 PF24981 117 - 256 2.2e-07 Attractin/LZTR1 beta-propeller
Beta-prop_Calicin PF13964 119 - 249 4.9e-10 Calicin, beta-propeller domain
Beta-prop_FBX42 PF13415 161 - 251 4.6e-06 FBX42, beta-propeller domain
Kelch_1 PF01344 166 - 201 3.2e-08 Kelch motif
Kelch_FKB95 PF25210 182 - 277 4.3e-06 FKB95, Kelch-repeats domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 791
Acc16I TGCGCA 1 cut(s) 890
Acc36I ACCTGC 1 cut(s) 791
AccI GTMKAC 2 cut(s) 36, 411
AccII CGCG 2 cut(s) 441, 822
AciI CCGC 9 cut(s) 230, 284, 338, 366, 436, 441, 466, 519, 688
AcoI YGGCCR 2 cut(s) 157, 867
AcuI CTGAAG 1 cut(s) 121
AcvI CACGTG 2 cut(s) 188, 432
AfaI GTAC 6 cut(s) 236, 509, 744, 812, 1025, 1038
AfiI CCNNNNNNNGG 4 cut(s) 203, 263, 435, 726
AflIII ACRYGT 4 cut(s) 187, 813, 845, 972
AgeI ACCGGT 1 cut(s) 237
AgsI TTSAA 3 cut(s) 182, 214, 715
AjiI CACGTC 2 cut(s) 568, 655
AjnI CCWGG 2 cut(s) 383, 995
AluBI AGCT 7 cut(s) 118, 166, 393, 649, 874, 881, 925
AluI AGCT 7 cut(s) 118, 166, 393, 649, 874, 881, 925
Alw26I GTCTC 2 cut(s) 315, 701
AoxI GGCC 3 cut(s) 157, 685, 867
ApeKI GCWGC 2 cut(s) 335, 874
AsiGI ACCGGT 1 cut(s) 237
AspLEI GCGC 3 cut(s) 441, 704, 891
AspS9I GGNCC 2 cut(s) 345, 462
AsuC2I CCSGG 4 cut(s) 303, 377, 456, 946
AsuHPI GGTGA 4 cut(s) 235, 278, 391, 965
AvaII GGWCC 2 cut(s) 345, 462
BaeI ACNNNNGTAYC 2 cut(s) 218, 251
BalI TGGCCA 1 cut(s) 159
BanII GRGCYC 1 cut(s) 960
BbrPI CACGTG 2 cut(s) 188, 432
BbsI GAAGAC 3 cut(s) 11, 202, 397
BbvI GCAGC 2 cut(s) 347, 861
BccI CCATC 3 cut(s) 169, 521, 818
BcgI CGANNNNNNTGC 6 cut(s) 521, 531, 555, 565, 769, 803
BciT130I CCWGG 2 cut(s) 385, 997
BclI TGATCA 2 cut(s) 64, 834
BcnI CCSGG 4 cut(s) 303, 377, 456, 946
BcoDI GTCTC 2 cut(s) 315, 701
BfoI RGCGCY 1 cut(s) 705
BfuAI ACCTGC 1 cut(s) 791
BisI GCNGC 4 cut(s) 336, 437, 688, 875
BlsI GCNGC 4 cut(s) 337, 438, 689, 876
BmcAI AGTACT 1 cut(s) 1025
Bme1390I CCNGG 6 cut(s) 303, 377, 385, 456, 946, 997
Bme18I GGWCC 2 cut(s) 345, 462
BmgBI CACGTC 2 cut(s) 568, 655
BmgT120I GGNCC 2 cut(s) 345, 462
BmiI GGNNCC 4 cut(s) 346, 445, 463, 464
BmrFI CCNGG 6 cut(s) 303, 377, 385, 456, 946, 997
BpiI GAAGAC 3 cut(s) 11, 202, 397
BplI GAGNNNNNCTC 2 cut(s) 1010, 1042
BpmI CTGGAG 1 cut(s) 1018
BpuMI CCSGG 4 cut(s) 303, 377, 456, 946
BsaAI YACGTR 2 cut(s) 188, 432
BsaI GGTCTC 1 cut(s) 315
BsaJI CCNNGG 4 cut(s) 202, 301, 384, 864
BsaWI WCCGGW 2 cut(s) 237, 498
Bsc4I CCNNNNNNNGG 4 cut(s) 203, 263, 435, 726
Bse118I RCCGGY 2 cut(s) 237, 515
Bse1I ACTGG 1 cut(s) 328
Bse3DI GCAATG 1 cut(s) 561
BseBI CCWGG 2 cut(s) 385, 997
BseDI CCNNGG 4 cut(s) 202, 301, 384, 864
BseGI GGATG 1 cut(s) 944
BseLI CCNNNNNNNGG 4 cut(s) 203, 263, 435, 726
BseMI GCAATG 1 cut(s) 561
BseMII CTCAG 1 cut(s) 1008
BseNI ACTGG 1 cut(s) 328
BseXI GCAGC 2 cut(s) 347, 861
Bsh1236I CGCG 2 cut(s) 441, 822
BshFI GGCC 3 cut(s) 159, 687, 869
BshTI ACCGGT 1 cut(s) 237
BsiSI CCGG 9 cut(s) 238, 257, 303, 377, 455, 499, 516, 896, 945
BslFI GGGAC 2 cut(s) 358, 448
BslI CCNNNNNNNGG 4 cut(s) 203, 263, 435, 726
BsmAI GTCTC 2 cut(s) 315, 701
BsmFI GGGAC 2 cut(s) 358, 448
BsmI GAATGC 2 cut(s) 544, 626
BsnI GGCC 3 cut(s) 159, 687, 869
Bso31I GGTCTC 1 cut(s) 315
Bsp1286I GDGCHC 1 cut(s) 960
Bsp1407I TGTACA 2 cut(s) 742, 1036
Bsp143I GATC 4 cut(s) 64, 548, 762, 834
Bsp68I TCGCGA 1 cut(s) 822
BspACI CCGC 9 cut(s) 230, 284, 338, 366, 436, 441, 466, 519, 688
BspANI GGCC 3 cut(s) 159, 687, 869
BspCNI CTCAG 1 cut(s) 1009
BspFNI CGCG 2 cut(s) 441, 822
BspHI TCATGA 1 cut(s) 420
BspLI GGNNCC 4 cut(s) 346, 445, 463, 464
BspMI ACCTGC 1 cut(s) 791
BspTNI GGTCTC 1 cut(s) 315
BsrDI GCAATG 1 cut(s) 561
BsrFI RCCGGY 2 cut(s) 237, 515
BsrGI TGTACA 2 cut(s) 742, 1036
BsrI ACTGG 1 cut(s) 328
BssAI RCCGGY 2 cut(s) 237, 515
BssECI CCNNGG 4 cut(s) 202, 301, 384, 864
BssMI GATC 4 cut(s) 64, 548, 762, 834
BssT1I CCWWGG 1 cut(s) 202
Bst2UI CCWGG 2 cut(s) 385, 997
Bst4CI ACNGT 4 cut(s) 247, 505, 865, 920
BstAUI TGTACA 2 cut(s) 742, 1036
BstBAI YACGTR 2 cut(s) 188, 432
BstC8I GCNNGC 5 cut(s) 391, 517, 647, 793, 879
BstDEI CTNAG 1 cut(s) 1017
BstDSI CCRYGG 1 cut(s) 864
BstEII GGTNACC 1 cut(s) 379
BstF5I GGATG 1 cut(s) 944
BstFNI CGCG 2 cut(s) 441, 822
BstH2I RGCGCY 1 cut(s) 705
BstHHI GCGC 3 cut(s) 441, 704, 891
BstKTI GATC 4 cut(s) 67, 551, 765, 837
BstMAI GTCTC 2 cut(s) 315, 701
BstMBI GATC 4 cut(s) 64, 548, 762, 834
BstMWI GCNNNNNNNGC 4 cut(s) 621, 646, 792, 922
BstNI CCWGG 2 cut(s) 385, 997
BstNSI RCATGY 4 cut(s) 772, 817, 849, 976
BstPI GGTNACC 1 cut(s) 379
BstSCI CCNGG 6 cut(s) 301, 375, 383, 454, 944, 995
BstUI CGCG 2 cut(s) 441, 822
BstV1I GCAGC 2 cut(s) 347, 861
BstV2I GAAGAC 3 cut(s) 11, 202, 397
BstXI CCANNNNNNTGG 2 cut(s) 355, 659
BsuRI GGCC 3 cut(s) 159, 687, 869
BtgI CCRYGG 1 cut(s) 864
BtgZI GCGATG 3 cut(s) 116, 810, 837
BtrI CACGTC 2 cut(s) 568, 655
BtsCI GGATG 1 cut(s) 944
BtsI GCAGTG 1 cut(s) 737
BtsIMutI CAGTG 1 cut(s) 737
BtuMI TCGCGA 1 cut(s) 822
BveI ACCTGC 1 cut(s) 791
Cac8I GCNNGC 5 cut(s) 391, 517, 647, 793, 879
CciI TCATGA 1 cut(s) 420
CfoI GCGC 3 cut(s) 441, 704, 891
Cfr10I RCCGGY 2 cut(s) 237, 515
Cfr13I GGNCC 2 cut(s) 345, 462
CseI GACGC 2 cut(s) 474, 775
Csp6I GTAC 6 cut(s) 235, 508, 743, 811, 1024, 1037
CspAI ACCGGT 1 cut(s) 237
CviQI GTAC 6 cut(s) 235, 508, 743, 811, 1024, 1037
DdeI CTNAG 1 cut(s) 1017
DpnI GATC 4 cut(s) 66, 550, 764, 836
DpnII GATC 4 cut(s) 64, 548, 762, 834
EaeI YGGCCR 2 cut(s) 157, 867
EciI GGCGGA 1 cut(s) 534
Eco130I CCWWGG 1 cut(s) 202
Eco24I GRGCYC 1 cut(s) 960
Eco31I GGTCTC 1 cut(s) 315
Eco47I GGWCC 2 cut(s) 345, 462
Eco57I CTGAAG 1 cut(s) 121
Eco72I CACGTG 2 cut(s) 188, 432
Eco91I GGTNACC 1 cut(s) 379
EcoO109I RGGNCCY 1 cut(s) 462
EcoO65I GGTNACC 1 cut(s) 379
EcoRII CCWGG 2 cut(s) 383, 995
EcoT14I CCWWGG 1 cut(s) 202
EcoT22I ATGCAT 1 cut(s) 544
EcoT38I GRGCYC 1 cut(s) 960
ErhI CCWWGG 1 cut(s) 202
FaqI GGGAC 2 cut(s) 358, 448
FauI CCCGC 2 cut(s) 291, 473
FbaI TGATCA 2 cut(s) 64, 834
FblI GTMKAC 2 cut(s) 36, 411
Fnu4HI GCNGC 4 cut(s) 336, 437, 688, 875
FokI GGATG 1 cut(s) 951
FriOI GRGCYC 1 cut(s) 960
Fsp4HI GCNGC 4 cut(s) 336, 437, 688, 875
FspI TGCGCA 1 cut(s) 890
GlaI GCGC 3 cut(s) 440, 703, 890
GluI GCNGC 4 cut(s) 336, 437, 688, 875
GsuI CTGGAG 1 cut(s) 1018
HaeII RGCGCY 1 cut(s) 705
HaeIII GGCC 3 cut(s) 159, 687, 869
HapII CCGG 9 cut(s) 238, 257, 303, 377, 455, 499, 516, 896, 945
HgaI GACGC 2 cut(s) 474, 775
HhaI GCGC 3 cut(s) 441, 704, 891
Hin6I GCGC 3 cut(s) 439, 702, 889
HinP1I GCGC 3 cut(s) 439, 702, 889
HinfI GANTC 3 cut(s) 260, 491, 586
HpaII CCGG 9 cut(s) 238, 257, 303, 377, 455, 499, 516, 896, 945
HphI GGTGA 4 cut(s) 235, 278, 391, 965
Hpy166II GTNNAC 6 cut(s) 37, 243, 412, 508, 743, 776
Hpy188I TCNGA 4 cut(s) 75, 109, 140, 490
Hpy188III TCNNGA 4 cut(s) 23, 421, 821, 983
Hpy8I GTNNAC 6 cut(s) 37, 243, 412, 508, 743, 776
Hpy99I CGWCG 3 cut(s) 515, 620, 791
HpyCH4III ACNGT 4 cut(s) 247, 505, 865, 920
HpyCH4IV ACGT 6 cut(s) 187, 431, 510, 567, 654, 809
HpyCH4V TGCA 5 cut(s) 335, 542, 624, 672, 682
HpyF10VI GCNNNNNNNGC 4 cut(s) 621, 646, 792, 922
HpyF3I CTNAG 1 cut(s) 1017
HpySE526I ACGT 6 cut(s) 187, 431, 510, 567, 654, 809
HspAI GCGC 3 cut(s) 439, 702, 889
KflI GGGWCCC 1 cut(s) 462
KroI GCCGGC 1 cut(s) 515
KroNI GCCGGC 1 cut(s) 517
Ksp22I TGATCA 2 cut(s) 64, 834
Kzo9I GATC 4 cut(s) 64, 548, 762, 834
LmnI GCTCC 1 cut(s) 654
Lsp1109I GCAGC 2 cut(s) 347, 861
MaeII ACGT 6 cut(s) 187, 431, 510, 567, 654, 809
MaeIII GTNAC 1 cut(s) 379
MalI GATC 4 cut(s) 66, 550, 764, 836
MboI GATC 4 cut(s) 64, 548, 762, 834
MboII GAAGA 4 cut(s) 11, 202, 397, 547
MhlI GDGCHC 1 cut(s) 960
MlsI TGGCCA 1 cut(s) 159
MluCI AATT 1 cut(s) 288
MluNI TGGCCA 1 cut(s) 159
MlyI GAGTC 1 cut(s) 485
MmeI TCCRAC 2 cut(s) 80, 98
MnlI CCTC 4 cut(s) 103, 204, 730, 742
Mox20I TGGCCA 1 cut(s) 159
Mph1103I ATGCAT 1 cut(s) 544
MreI CGCCGGCG 1 cut(s) 515
MroNI GCCGGC 1 cut(s) 515
MscI TGGCCA 1 cut(s) 159
MseI TTAA 1 cut(s) 978
MslI CAYNNNNRTG 3 cut(s) 173, 677, 730
Msp20I TGGCCA 1 cut(s) 159
MspA1I CMGCKG 2 cut(s) 232, 338
MspI CCGG 9 cut(s) 238, 257, 303, 377, 455, 499, 516, 896, 945
MspR9I CCNGG 6 cut(s) 303, 377, 385, 456, 946, 997
Mva1269I GAATGC 2 cut(s) 544, 626
MvaI CCWGG 2 cut(s) 385, 997
MvnI CGCG 2 cut(s) 441, 822
MwoI GCNNNNNNNGC 4 cut(s) 621, 646, 792, 922
NaeI GCCGGC 1 cut(s) 517
NciI CCSGG 4 cut(s) 303, 377, 456, 946
NdeII GATC 4 cut(s) 64, 548, 762, 834
NgoMIV GCCGGC 1 cut(s) 515
NlaIV GGNNCC 4 cut(s) 346, 445, 463, 464
NmeAIII GCCGAG 2 cut(s) 730, 895
NmuCI GTSAC 1 cut(s) 379
NruI TCGCGA 1 cut(s) 822
NsbI TGCGCA 1 cut(s) 890
NsiI ATGCAT 1 cut(s) 544
NspI RCATGY 4 cut(s) 772, 817, 849, 976
PagI TCATGA 1 cut(s) 420
PaqCI CACCTGC 1 cut(s) 791
PciI ACATGT 3 cut(s) 813, 845, 972
PcsI WCGNNNNNNNCGW 1 cut(s) 557
PctI GAATGC 2 cut(s) 544, 626
PdiI GCCGGC 1 cut(s) 517
PfeI GAWTC 2 cut(s) 260, 586
PinAI ACCGGT 1 cut(s) 237
PkrI GCNGC 4 cut(s) 337, 438, 689, 876
PleI GAGTC 1 cut(s) 485
PmaCI CACGTG 2 cut(s) 188, 432
PmlI CACGTG 2 cut(s) 188, 432
PpsI GAGTC 1 cut(s) 485
Ppu21I YACGTR 2 cut(s) 188, 432
PpuMI RGGWCCY 1 cut(s) 462
PscI ACATGT 3 cut(s) 813, 845, 972
Psp5II RGGWCCY 1 cut(s) 462
Psp6I CCWGG 2 cut(s) 383, 995
PspCI CACGTG 2 cut(s) 188, 432
PspEI GGTNACC 1 cut(s) 379
PspGI CCWGG 2 cut(s) 383, 995
PspN4I GGNNCC 4 cut(s) 346, 445, 463, 464
PspPI GGNCC 2 cut(s) 345, 462
PspPPI RGGWCCY 1 cut(s) 462
RruI TCGCGA 1 cut(s) 822
RsaI GTAC 6 cut(s) 236, 509, 744, 812, 1025, 1038
RsaNI GTAC 6 cut(s) 235, 508, 743, 811, 1024, 1037
RseI CAYNNNNRTG 3 cut(s) 173, 677, 730
SaqAI TTAA 1 cut(s) 978
SatI GCNGC 4 cut(s) 336, 437, 688, 875
Sau3AI GATC 4 cut(s) 64, 548, 762, 834
Sau96I GGNCC 2 cut(s) 345, 462
ScaI AGTACT 1 cut(s) 1025
SchI GAGTC 1 cut(s) 485
ScrFI CCNGG 6 cut(s) 303, 377, 385, 456, 946, 997
SduI GDGCHC 1 cut(s) 960
SgrAI CRCCGGYG 1 cut(s) 515
SinI GGWCC 2 cut(s) 345, 462
SmiMI CAYNNNNRTG 3 cut(s) 173, 677, 730
Sse9I AATT 1 cut(s) 288
SsiI CCGC 9 cut(s) 230, 284, 338, 366, 436, 441, 466, 519, 688
StyD4I CCNGG 6 cut(s) 301, 375, 383, 454, 944, 995
StyI CCWWGG 1 cut(s) 202
TaaI ACNGT 4 cut(s) 247, 505, 865, 920
TaiI ACGT 6 cut(s) 190, 434, 513, 570, 657, 812
TaqII GACCGA 1 cut(s) 391
TasI AATT 1 cut(s) 288
TatI WGTACW 3 cut(s) 742, 1023, 1036
TauI GCSGC 2 cut(s) 439, 690
TfiI GAWTC 2 cut(s) 260, 586
Tru1I TTAA 1 cut(s) 978
Tru9I TTAA 1 cut(s) 978
TscAI CASTG 1 cut(s) 737
TseFI GTSAC 1 cut(s) 379
TseI GCWGC 2 cut(s) 335, 874
Tsp45I GTSAC 1 cut(s) 379
TspDTI ATGAA 3 cut(s) 42, 119, 409
TspRI CASTG 1 cut(s) 737
VpaK11BI GGWCC 2 cut(s) 345, 462
XceI RCATGY 4 cut(s) 772, 817, 849, 976
XcmI CCANNNNNNNNNTGG 2 cut(s) 355, 659
XmiI GTMKAC 2 cut(s) 36, 411
ZrmI AGTACT 1 cut(s) 1025
Zsp2I ATGCAT 1 cut(s) 544
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.