FvH4_6g30930

F-box kelch-repeat protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
24109839 .. 24111756
1918 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g30930.t1

Sequence Viewer

Length: 1080 bp
ATGGTTTTGATTTCAGGTCTTCCTGATGAAGTTGTCTACGATTGTCTTATTCGTGTCAAGTATGATCAGTTTCCGACTATAACATCTGTTTGTAAAGGTTGGAAATCAGAGGTTGAGCTACCAGAGTTTCATCGCCTCCGAAAGAATAGTGGTTATGGCCAAAAGCTCGTTGCGATGGTCCAAGCATGTGTTGCTTCCAACCAAGGTGGTGCTGCTGCTGGTGTCTTCAAGTGCCTGCAAAGCCCGACTTACCGGTTCACTGTTTGTGAACCGGATTCTGGTGACTGGGGAGAGTTCCCGCCAATTTCCGTTTTCCCCGGTGGGTCTCTACCCATGTTCTGCCAGTTTGCGGCGGTTGGAACCGATTTAGTGGTGGTTGGCGGTTTGGACCCGGTGACATGGGCGAGTTGTAAATCGGTCGTCGTCTACAACTTCATGACTGGCACGTGGCGGCGCGGAGCTGATATGCCGGGTGGGTCCCGCATATTTTTCGGGTGTGCGTCAGACTCTAATCGGACGGTGTTTGTTGCCGGCGGACACGACGACGAGAAGAATGCGTTGAGAACGGCGATGGCATATGATGTGGCGAAAGACGAGTGGATTCTATTGCCTGACATGGAAAGAGAGCGTGATGAATGTAAGGTTATTTTTCAACATGACAAGCTCCAAGTCATTGGTGGCTACAACACTGAAATGCAAGGTCGCTTTGAGAGAACCGCTGAGACATTCAACATATCCACATGGCAGTGGGATTGTGTACAAGAGGATTTCTTACAAATCGCCATGTGCCCACGAACTTGCGTCGTTGGCAATGACCGGTCAGTTTATATGTGTCATGATGGTAACATGATCAAACAAGGATTTGGTATGTGGCAAATTGTGGCCGAGCTACCACCTCAGGTGCGTAATCCGGCCTCCGTGACAACGTGGCACAATAAGCTGTTAGTGATTGGATGTCTCGAATTCGGTGGACCCCATATGGCTTACATGTTAAATTTGGAAAATAACACCTGGAGTAAGTTAGAGACGTCTGAGAAGTACTCTGGTCATGTTCAGTCAAGTTGTTATTTGGAGATTTAA

Protein Analysis

360

Amino Acids

40.11

Weight (kDa)

5.25

Isoelectric Point (pI)

39.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Kelch_FKB95 PF25210 109 - 211 1.3e-07 FKB95, Kelch-repeats domain
Kelch_1 PF01344 116 - 157 2.7e-08 Kelch motif
Kelch_KLHDC2_KLHL20_DRC7 PF24681 116 - 257 9.1e-10 KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_ATRN-LZTR1 PF24981 122 - 257 3.1e-06 Attractin/LZTR1 beta-propeller
Beta-prop_Calicin PF13964 135 - 296 1e-08 Calicin, beta-propeller domain
Kelch_1 PF01344 171 - 206 1.9e-06 Kelch motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1031
AccI GTMKAC 2 cut(s) 36, 426
AccII CGCG 1 cut(s) 456
AciI CCGC 9 cut(s) 299, 350, 353, 381, 451, 456, 481, 534, 717
AcoI YGGCCR 2 cut(s) 157, 882
AcsI RAATTY 2 cut(s) 962, 994
AcvI CACGTG 1 cut(s) 447
AcyI GRCGYC 1 cut(s) 1028
AfaI GTAC 2 cut(s) 759, 1040
AfiI CCNNNNNNNGG 2 cut(s) 278, 349
AflIII ACRYGT 1 cut(s) 987
AgeI ACCGGT 2 cut(s) 252, 816
AgsI TTSAA 3 cut(s) 229, 653, 730
AjnI CCWGG 1 cut(s) 1010
AluBI AGCT 6 cut(s) 118, 166, 461, 664, 889, 940
AluI AGCT 6 cut(s) 118, 166, 461, 664, 889, 940
Alw26I GTCTC 4 cut(s) 330, 716, 962, 1019
AoxI GGCC 3 cut(s) 157, 882, 912
ApeKI GCWGC 2 cut(s) 212, 215
ApoI RAATTY 2 cut(s) 962, 994
AsiGI ACCGGT 2 cut(s) 252, 816
AspLEI GCGC 1 cut(s) 456
AspS9I GGNCC 4 cut(s) 178, 388, 477, 971
AsuC2I CCSGG 3 cut(s) 318, 392, 471
AsuHPI GGTGA 2 cut(s) 293, 406
AvaII GGWCC 4 cut(s) 178, 388, 477, 971
AxyI CCTNAGG 1 cut(s) 897
BaeGI GKGCMC 1 cut(s) 791
BalI TGGCCA 1 cut(s) 159
BbrPI CACGTG 1 cut(s) 447
BbsI GAAGAC 2 cut(s) 11, 217
BbvI GCAGC 2 cut(s) 199, 202
BccI CCATC 3 cut(s) 169, 565, 833
BceAI ACGGC 1 cut(s) 582
BcgI CGANNNNNNTGC 4 cut(s) 472, 506, 536, 570
BciT130I CCWGG 1 cut(s) 1012
BclI TGATCA 2 cut(s) 64, 849
BcnI CCSGG 3 cut(s) 318, 392, 471
BcoDI GTCTC 4 cut(s) 330, 716, 962, 1019
BisI GCNGC 4 cut(s) 213, 216, 351, 452
BlsI GCNGC 4 cut(s) 214, 217, 352, 453
BmcAI AGTACT 1 cut(s) 1040
Bme1390I CCNGG 4 cut(s) 318, 392, 471, 1012
Bme18I GGWCC 4 cut(s) 178, 388, 477, 971
BmgT120I GGNCC 4 cut(s) 178, 388, 477, 971
BmiI GGNNCC 5 cut(s) 361, 390, 478, 479, 973
BmrFI CCNGG 4 cut(s) 318, 392, 471, 1012
BmrI ACTGGG 1 cut(s) 295
BmuI ACTGGG 1 cut(s) 295
BpiI GAAGAC 2 cut(s) 11, 217
BplI GAGNNNNNCTC 2 cut(s) 1025, 1057
BpmI CTGGAG 1 cut(s) 1033
BpuMI CCSGG 3 cut(s) 318, 392, 471
BsaAI YACGTR 1 cut(s) 447
BsaHI GRCGYC 1 cut(s) 1028
BsaI GGTCTC 1 cut(s) 330
BsaJI CCNNGG 2 cut(s) 202, 316
BsaWI WCCGGW 3 cut(s) 252, 271, 816
Bsc4I CCNNNNNNNGG 2 cut(s) 278, 349
Bse118I RCCGGY 3 cut(s) 252, 530, 816
Bse1I ACTGG 3 cut(s) 290, 343, 445
Bse21I CCTNAGG 1 cut(s) 897
Bse3DI GCAATG 1 cut(s) 817
BseBI CCWGG 1 cut(s) 1012
BseDI CCNNGG 2 cut(s) 202, 316
BseGI GGATG 1 cut(s) 959
BseLI CCNNNNNNNGG 2 cut(s) 278, 349
BseMI GCAATG 1 cut(s) 817
BseMII CTCAG 3 cut(s) 711, 911, 1023
BseNI ACTGG 3 cut(s) 290, 343, 445
BseSI GKGCMC 1 cut(s) 791
BseXI GCAGC 2 cut(s) 199, 202
Bsh1236I CGCG 1 cut(s) 456
Bsh1285I CGRYCG 1 cut(s) 420
BshFI GGCC 3 cut(s) 159, 884, 914
BshTI ACCGGT 2 cut(s) 252, 816
BsiEI CGRYCG 1 cut(s) 420
BsiSI CCGG 8 cut(s) 253, 272, 318, 392, 470, 531, 817, 911
BslFI GGGAC 1 cut(s) 463
BslI CCNNNNNNNGG 2 cut(s) 278, 349
BsmAI GTCTC 4 cut(s) 330, 716, 962, 1019
BsmBI CGTCTC 1 cut(s) 1019
BsmFI GGGAC 1 cut(s) 463
BsmI GAATGC 1 cut(s) 559
BsnI GGCC 3 cut(s) 159, 884, 914
Bso31I GGTCTC 1 cut(s) 330
Bsp1286I GDGCHC 1 cut(s) 791
Bsp1407I TGTACA 1 cut(s) 757
Bsp143I GATC 2 cut(s) 64, 849
BspACI CCGC 9 cut(s) 299, 350, 353, 381, 451, 456, 481, 534, 717
BspANI GGCC 3 cut(s) 159, 884, 914
BspCNI CTCAG 3 cut(s) 712, 910, 1024
BspFNI CGCG 1 cut(s) 456
BspHI TCATGA 2 cut(s) 435, 835
BspLI GGNNCC 5 cut(s) 361, 390, 478, 479, 973
BspTNI GGTCTC 1 cut(s) 330
BsrDI GCAATG 1 cut(s) 817
BsrFI RCCGGY 3 cut(s) 252, 530, 816
BsrGI TGTACA 1 cut(s) 757
BsrI ACTGG 3 cut(s) 290, 343, 445
BssAI RCCGGY 3 cut(s) 252, 530, 816
BssECI CCNNGG 2 cut(s) 202, 316
BssMI GATC 2 cut(s) 64, 849
BssNI GRCGYC 1 cut(s) 1028
BssT1I CCWWGG 1 cut(s) 202
Bst2UI CCWGG 1 cut(s) 1012
Bst4CI ACNGT 2 cut(s) 262, 520
BstACI GRCGYC 1 cut(s) 1028
BstAPI GCANNNNNTGC 1 cut(s) 191
BstAUI TGTACA 1 cut(s) 757
BstBAI YACGTR 1 cut(s) 447
BstC8I GCNNGC 2 cut(s) 236, 532
BstDEI CTNAG 3 cut(s) 720, 897, 1032
BstF5I GGATG 1 cut(s) 959
BstFNI CGCG 1 cut(s) 456
BstHHI GCGC 1 cut(s) 456
BstKTI GATC 2 cut(s) 67, 852
BstMAI GTCTC 4 cut(s) 330, 716, 962, 1019
BstMBI GATC 2 cut(s) 64, 849
BstMCI CGRYCG 1 cut(s) 420
BstMWI GCNNNNNNNGC 4 cut(s) 191, 240, 807, 937
BstNI CCWGG 1 cut(s) 1012
BstNSI RCATGY 2 cut(s) 189, 991
BstSCI CCNGG 4 cut(s) 316, 390, 469, 1010
BstSLI GKGCMC 1 cut(s) 791
BstUI CGCG 1 cut(s) 456
BstV1I GCAGC 2 cut(s) 199, 202
BstV2I GAAGAC 2 cut(s) 11, 217
BstXI CCANNNNNNTGG 1 cut(s) 674
Bsu36I CCTNAGG 1 cut(s) 897
BsuRI GGCC 3 cut(s) 159, 884, 914
BtgZI GCGATG 3 cut(s) 116, 188, 584
BtsCI GGATG 1 cut(s) 959
BtsI GCAGTG 1 cut(s) 752
BtsIMutI CAGTG 3 cut(s) 258, 687, 752
Cac8I GCNNGC 2 cut(s) 236, 532
CciI TCATGA 2 cut(s) 435, 835
CfoI GCGC 1 cut(s) 456
Cfr10I RCCGGY 3 cut(s) 252, 530, 816
Cfr13I GGNCC 4 cut(s) 178, 388, 477, 971
CseI GACGC 2 cut(s) 489, 790
Csp6I GTAC 2 cut(s) 758, 1039
CspAI ACCGGT 2 cut(s) 252, 816
CspCI CAANNNNNGTGG 2 cut(s) 187, 222
CviQI GTAC 2 cut(s) 758, 1039
DdeI CTNAG 3 cut(s) 720, 897, 1032
DpnI GATC 2 cut(s) 66, 851
DpnII GATC 2 cut(s) 64, 849
EaeI YGGCCR 2 cut(s) 157, 882
EciI GGCGGA 1 cut(s) 549
Eco130I CCWWGG 1 cut(s) 202
Eco31I GGTCTC 1 cut(s) 330
Eco47I GGWCC 4 cut(s) 178, 388, 477, 971
Eco72I CACGTG 1 cut(s) 447
Eco81I CCTNAGG 1 cut(s) 897
EcoO109I RGGNCCY 1 cut(s) 477
EcoRI GAATTC 1 cut(s) 962
EcoRII CCWGG 1 cut(s) 1010
EcoT14I CCWWGG 1 cut(s) 202
ErhI CCWWGG 1 cut(s) 202
Esp3I CGTCTC 1 cut(s) 1019
FalI AAGNNNNNCTT 2 cut(s) 232, 264
FaqI GGGAC 1 cut(s) 463
FauI CCCGC 2 cut(s) 306, 488
FauNDI CATATG 2 cut(s) 577, 978
FbaI TGATCA 2 cut(s) 64, 849
FblI GTMKAC 2 cut(s) 36, 426
Fnu4HI GCNGC 4 cut(s) 213, 216, 351, 452
FokI GGATG 1 cut(s) 966
Fsp4HI GCNGC 4 cut(s) 213, 216, 351, 452
GlaI GCGC 1 cut(s) 455
GluI GCNGC 4 cut(s) 213, 216, 351, 452
GsuI CTGGAG 1 cut(s) 1033
HaeIII GGCC 3 cut(s) 159, 884, 914
HapII CCGG 8 cut(s) 253, 272, 318, 392, 470, 531, 817, 911
HgaI GACGC 2 cut(s) 489, 790
HhaI GCGC 1 cut(s) 456
Hin1I GRCGYC 1 cut(s) 1028
Hin6I GCGC 1 cut(s) 454
HinP1I GCGC 1 cut(s) 454
HinfI GANTC 3 cut(s) 275, 506, 601
HpaII CCGG 8 cut(s) 253, 272, 318, 392, 470, 531, 817, 911
HphI GGTGA 2 cut(s) 293, 406
Hpy166II GTNNAC 6 cut(s) 37, 258, 269, 427, 758, 971
Hpy188I TCNGA 6 cut(s) 75, 109, 140, 505, 516, 1033
Hpy188III TCNNGA 4 cut(s) 23, 436, 836, 959
Hpy8I GTNNAC 6 cut(s) 37, 258, 269, 427, 758, 971
Hpy99I CGWCG 4 cut(s) 425, 545, 548, 806
HpyCH4III ACNGT 2 cut(s) 262, 520
HpyCH4IV ACGT 3 cut(s) 446, 926, 1028
HpyCH4V TGCA 2 cut(s) 238, 697
HpyF10VI GCNNNNNNNGC 4 cut(s) 191, 240, 807, 937
HpyF3I CTNAG 3 cut(s) 720, 897, 1032
HpySE526I ACGT 3 cut(s) 446, 926, 1028
Hsp92I GRCGYC 1 cut(s) 1028
HspAI GCGC 1 cut(s) 454
KflI GGGWCCC 1 cut(s) 477
KroI GCCGGC 1 cut(s) 530
KroNI GCCGGC 1 cut(s) 532
Ksp22I TGATCA 2 cut(s) 64, 849
Kzo9I GATC 2 cut(s) 64, 849
LmnI GCTCC 2 cut(s) 458, 669
Lsp1109I GCAGC 2 cut(s) 199, 202
MaeII ACGT 3 cut(s) 446, 926, 1028
MaeIII GTNAC 4 cut(s) 281, 394, 842, 919
MalI GATC 2 cut(s) 66, 851
MboI GATC 2 cut(s) 64, 849
MboII GAAGA 3 cut(s) 11, 217, 562
MhlI GDGCHC 1 cut(s) 791
MlsI TGGCCA 1 cut(s) 159
MluCI AATT 4 cut(s) 303, 876, 962, 994
MluNI TGGCCA 1 cut(s) 159
MlyI GAGTC 1 cut(s) 500
MmeI TCCRAC 4 cut(s) 80, 98, 222, 337
MnlI CCTC 5 cut(s) 103, 146, 757, 906, 925
Mox20I TGGCCA 1 cut(s) 159
MroNI GCCGGC 1 cut(s) 530
MscI TGGCCA 1 cut(s) 159
MseI TTAA 2 cut(s) 992, 1078
MslI CAYNNNNRTG 2 cut(s) 692, 745
Msp20I TGGCCA 1 cut(s) 159
MspA1I CMGCKG 1 cut(s) 719
MspI CCGG 8 cut(s) 253, 272, 318, 392, 470, 531, 817, 911
MspR9I CCNGG 4 cut(s) 318, 392, 471, 1012
Mva1269I GAATGC 1 cut(s) 559
MvaI CCWGG 1 cut(s) 1012
MvnI CGCG 1 cut(s) 456
MwoI GCNNNNNNNGC 4 cut(s) 191, 240, 807, 937
NaeI GCCGGC 1 cut(s) 532
NciI CCSGG 3 cut(s) 318, 392, 471
NdeI CATATG 2 cut(s) 577, 978
NdeII GATC 2 cut(s) 64, 849
NgoMIV GCCGGC 1 cut(s) 530
NlaIV GGNNCC 5 cut(s) 361, 390, 478, 479, 973
NmeAIII GCCGAG 1 cut(s) 910
NmuCI GTSAC 3 cut(s) 281, 394, 919
NspI RCATGY 2 cut(s) 189, 991
PagI TCATGA 2 cut(s) 435, 835
PciI ACATGT 1 cut(s) 987
PctI GAATGC 1 cut(s) 559
PdiI GCCGGC 1 cut(s) 532
PfeI GAWTC 2 cut(s) 275, 601
PinAI ACCGGT 2 cut(s) 252, 816
PkrI GCNGC 4 cut(s) 214, 217, 352, 453
PleI GAGTC 1 cut(s) 500
PmaCI CACGTG 1 cut(s) 447
PmlI CACGTG 1 cut(s) 447
PpsI GAGTC 1 cut(s) 500
Ppu21I YACGTR 1 cut(s) 447
PpuMI RGGWCCY 1 cut(s) 477
PscI ACATGT 1 cut(s) 987
Psp5II RGGWCCY 1 cut(s) 477
Psp6I CCWGG 1 cut(s) 1010
PspCI CACGTG 1 cut(s) 447
PspGI CCWGG 1 cut(s) 1010
PspN4I GGNNCC 5 cut(s) 361, 390, 478, 479, 973
PspPI GGNCC 4 cut(s) 178, 388, 477, 971
PspPPI RGGWCCY 1 cut(s) 477
RsaI GTAC 2 cut(s) 759, 1040
RsaNI GTAC 2 cut(s) 758, 1039
RseI CAYNNNNRTG 2 cut(s) 692, 745
SaqAI TTAA 2 cut(s) 992, 1078
SatI GCNGC 4 cut(s) 213, 216, 351, 452
Sau3AI GATC 2 cut(s) 64, 849
Sau96I GGNCC 4 cut(s) 178, 388, 477, 971
ScaI AGTACT 1 cut(s) 1040
SchI GAGTC 1 cut(s) 500
ScrFI CCNGG 4 cut(s) 318, 392, 471, 1012
SduI GDGCHC 1 cut(s) 791
SinI GGWCC 4 cut(s) 178, 388, 477, 971
SmiMI CAYNNNNRTG 2 cut(s) 692, 745
Sse9I AATT 4 cut(s) 303, 876, 962, 994
SsiI CCGC 9 cut(s) 299, 350, 353, 381, 451, 456, 481, 534, 717
StyD4I CCNGG 4 cut(s) 316, 390, 469, 1010
StyI CCWWGG 1 cut(s) 202
TaaI ACNGT 2 cut(s) 262, 520
TaiI ACGT 3 cut(s) 449, 929, 1031
TaqI TCGA 1 cut(s) 960
TaqII GACCGA 1 cut(s) 406
TasI AATT 4 cut(s) 303, 876, 962, 994
TatI WGTACW 2 cut(s) 757, 1038
TauI GCSGC 2 cut(s) 353, 454
TfiI GAWTC 2 cut(s) 275, 601
Tru1I TTAA 2 cut(s) 992, 1078
Tru9I TTAA 2 cut(s) 992, 1078
TscAI CASTG 3 cut(s) 265, 694, 752
TseFI GTSAC 3 cut(s) 281, 394, 919
TseI GCWGC 2 cut(s) 212, 215
Tsp45I GTSAC 3 cut(s) 281, 394, 919
TspDTI ATGAA 4 cut(s) 42, 119, 424, 648
TspGWI ACGGA 2 cut(s) 298, 907
TspRI CASTG 3 cut(s) 265, 694, 752
VpaK11BI GGWCC 4 cut(s) 178, 388, 477, 971
XapI RAATTY 2 cut(s) 962, 994
XceI RCATGY 2 cut(s) 189, 991
XcmI CCANNNNNNNNNTGG 1 cut(s) 674
XmiI GTMKAC 2 cut(s) 36, 426
ZraI GACGTC 1 cut(s) 1029
ZrmI AGTACT 1 cut(s) 1040
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.