Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005673

Physical Location & Seq

Genomic Coordinates Reverse (-)

42768426 .. 42772861

Gene Structure 4436 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0343100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGCAAAATACTGCAGGGTTAGAGATATCCTCTGGTGCTGAAACTGATGCTGAAACCCAACTTCCTGTCAAGTGTGGGTGTCTTTACCCAGTTGGCTTGATTTCTTCAAGTTCAGAAAGGATTGCAAGCACTCTTCTGTGGAGTAAATGGCAAGGTCAGGTCTTTAAATTTCTGATGATTGGACTCGATGGACAAGATAATCCCAAACCCTCAGGAAATTGCTTTGCCTCCCACAGCAAGCTAAAAGCATTTACAATGGCATATGAACTTCAAGCTGATGGGTTGATATATCAAGTAGTTTATAATCAGGTTCTTACCAACACCAAAGAATTTAAGAATGGATGTGACCCTGAATTCCATTCCATGGAAACACTCTCTGGGGATGACTCTAGATGGCTGGTAAACATCAAACAGTTATTTCAGGAAGCTTTGGGAGGTTGTGACCATGAGCTCTCATGCAAGGAAGTTCAACACCAGATTTTTTCTTTGGTTGTACCTAGGAATGTTATAATCTACTTAAGGCGACCAGTTGGTAGTGAAATTGATAGTAACATCATTCATCATGTGGATATTGCTTCTGGCTTGTACCCTATACTGTTCTGTTATCCAATCTCGCTAGAAGGGATTAATCATTTTCATCAGATACCTGACAGGGAGTGGTTTAAAACTGAGGCTGTTCTTCGTGTTAGCTTGGGAAACTTTCTGTTCTTCACCATCCTGTCAGTTGTGATGATTGGTATGATGAGTCAAAAGGATCCCCGTGATAGTATCCACCATGGTGGATGGATGATGAAAGCTACTTACTGGTTCCTTTTGGTGATCTTCTCATTGTTTTTCAAACCAAACGGGATTATTAGTTTCTATGGTTTACCAACGCATAAGTGGAAAAGCAAGAATATCTTTGCGAAGCAGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009966 GO:0009968 GO:0009987 GO:0010498 GO:0010646 GO:0010648 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0023051 GO:0023057 GO:0030162 GO:0030163 GO:0031323 GO:0031461 GO:0031625 GO:0032991 GO:0043161 GO:0043170 GO:0043455 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080036 GO:0080037 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234 GO:2000762

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box Kelch_1 Kelch_6

Protein Analysis

305

Amino Acids

34.54

Weight (kDa)

6.59

Isoelectric Point (pI)

37.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Serinc	PF03348	217 - 289	3.5e-17	Serine incorporator (Serinc)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15670 AT1G80440
fragaria_vesca	FvH4_6g30930 FvH4_6g30950
malus_domestica	MD17G1197600.v1.1
prunus_persica	Prupe.3G073600_v2.0.a1
pyrus_communis	pycom17g20250
rosa_chinensis	RchiOBHm_Chr2g0137541 RchiOBHm_Chr2g0137561
rosa_laevigata	RLG00000019660 RLG00000019661
rosa_multiflora	Rmu_co8224660.1_g000001 Rmu_sc0000765.1_g000013 Rmu_sc0038827.1_g000001
rosa_roxburghii	Rroxscaffold_2G00107020 Rroxscaffold_2G00107030
rosa_rugosa	Rorug02G0343100 Rorug02G0343400
rosa_samantha	Rh2AG390700 Rh2AG391100 Rh2BG398400 Rh2BG398600 Rh2CG377900 Rh2CG378100 Rh2DG413400 Rh2DG413500
rosa_wichuraiana	Rw2G032010 Rw2G032020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	303, 509
AccB7I	CCANNNNNTGG	1 cut(s)	364
AclWI	GGATC	2 cut(s)	749, 762
AcsI	RAATTY	3 cut(s)	167, 329, 353
AfaI	GTAC	2 cut(s)	495, 587
AfiI	CCNNNNNNNGG	1 cut(s)	364
AflII	CTTAAG	1 cut(s)	517
AgsI	TTSAA	4 cut(s)	108, 272, 470, 838
AleI	CACNNNNGTG	1 cut(s)	777
AluBI	AGCT	6 cut(s)	241, 275, 428, 451, 690, 797
AluI	AGCT	6 cut(s)	241, 275, 428, 451, 690, 797
Alw21I	GWGCWC	1 cut(s)	453
AlwI	GGATC	2 cut(s)	749, 762
ApoI	RAATTY	3 cut(s)	167, 329, 353
AseI	ATTAAT	1 cut(s)	627
AspA2I	CCTAGG	1 cut(s)	497
AsuHPI	GGTGA	2 cut(s)	703, 829
AvrII	CCTAGG	1 cut(s)	497
AxyI	CCTNAGG	1 cut(s)	211
BamHI	GGATCC	1 cut(s)	754
BanII	GRGCYC	1 cut(s)	453
Bbv12I	GWGCWC	1 cut(s)	453
BccI	CCATC	5 cut(s)	182, 272, 387, 722, 777
BciVI	GTATCC	1 cut(s)	779
BfaI	CTAG	3 cut(s)	390, 498, 617
BfmI	CTRYAG	1 cut(s)	12
BfrI	CTTAAG	1 cut(s)	517
BfuI	GTATCC	1 cut(s)	779
BlnI	CCTAGG	1 cut(s)	497
BmiI	GGNNCC	2 cut(s)	756, 809
BmrI	ACTGGG	1 cut(s)	83
BmsI	GCATC	1 cut(s)	37
BmuI	ACTGGG	1 cut(s)	83
BplI	GAGNNNNNCTC	2 cut(s)	14, 46
BsaJI	CCNNGG	3 cut(s)	363, 497, 775
Bsc4I	CCNNNNNNNGG	1 cut(s)	364
Bse1I	ACTGG	3 cut(s)	89, 527, 809
Bse21I	CCTNAGG	1 cut(s)	211
BseDI	CCNNGG	3 cut(s)	363, 497, 775
BseGI	GGATG	5 cut(s)	347, 388, 714, 788, 792
BseLI	CCNNNNNNNGG	1 cut(s)	364
BseMII	CTCAG	2 cut(s)	225, 660
BseNI	ACTGG	3 cut(s)	89, 527, 809
BsiHKAI	GWGCWC	1 cut(s)	453
BslI	CCNNNNNNNGG	1 cut(s)	364
Bsp1286I	GDGCHC	1 cut(s)	453
Bsp143I	GATC	2 cut(s)	754, 819
Bsp19I	CCATGG	2 cut(s)	363, 775
BspCNI	CTCAG	2 cut(s)	224, 661
BspLI	GGNNCC	2 cut(s)	756, 809
BspMAI	CTGCAG	1 cut(s)	16
BspPI	GGATC	2 cut(s)	749, 762
BspTI	CTTAAG	1 cut(s)	517
BsrI	ACTGG	3 cut(s)	89, 527, 809
BssECI	CCNNGG	3 cut(s)	363, 497, 775
BssMI	GATC	2 cut(s)	754, 819
BssT1I	CCWWGG	3 cut(s)	363, 497, 775
Bst4CI	ACNGT	2 cut(s)	414, 597
Bst6I	CTCTTC	1 cut(s)	138
BstAFI	CTTAAG	1 cut(s)	517
BstC8I	GCNNGC	2 cut(s)	127, 239
BstDEI	CTNAG	2 cut(s)	211, 669
BstDSI	CCRYGG	2 cut(s)	363, 775
BstF5I	GGATG	5 cut(s)	347, 388, 714, 788, 792
BstKTI	GATC	2 cut(s)	757, 822
BstMBI	GATC	2 cut(s)	754, 819
BstSFI	CTRYAG	1 cut(s)	12
BstX2I	RGATCY	1 cut(s)	754
BstXI	CCANNNNNNTGG	1 cut(s)	779
BstYI	RGATCY	1 cut(s)	754
Bsu36I	CCTNAGG	1 cut(s)	211
BsuI	GTATCC	1 cut(s)	779
BtgI	CCRYGG	2 cut(s)	363, 775
BtsCI	GGATG	5 cut(s)	347, 388, 714, 788, 792
BtsI	GCAGTG	1 cut(s)	917
BtsIMutI	CAGTG	1 cut(s)	917
Cac8I	GCNNGC	2 cut(s)	127, 239
Csp6I	GTAC	2 cut(s)	494, 586
CviAII	CATG	5 cut(s)	364, 446, 456, 563, 776
CviQI	GTAC	2 cut(s)	494, 586
DdeI	CTNAG	2 cut(s)	211, 669
DpnI	GATC	2 cut(s)	756, 821
DpnII	GATC	2 cut(s)	754, 819
DraI	TTTAAA	2 cut(s)	166, 664
Eam1104I	CTCTTC	1 cut(s)	138
EarI	CTCTTC	1 cut(s)	138
Ecl136II	GAGCTC	1 cut(s)	451
Eco130I	CCWWGG	3 cut(s)	363, 497, 775
Eco24I	GRGCYC	1 cut(s)	453
Eco32I	GATATC	1 cut(s)	27
Eco53kI	GAGCTC	1 cut(s)	451
Eco81I	CCTNAGG	1 cut(s)	211
EcoICRI	GAGCTC	1 cut(s)	451
EcoRI	GAATTC	1 cut(s)	353
EcoRV	GATATC	1 cut(s)	27
EcoT14I	CCWWGG	3 cut(s)	363, 497, 775
EcoT38I	GRGCYC	1 cut(s)	453
ErhI	CCWWGG	3 cut(s)	363, 497, 775
FaeI	CATG	5 cut(s)	367, 449, 459, 566, 779
FalI	AAGNNNNNCTT	2 cut(s)	884, 916
FatI	CATG	5 cut(s)	363, 445, 455, 562, 775
FauNDI	CATATG	1 cut(s)	262
FokI	GGATG	5 cut(s)	354, 395, 701, 795, 799
FriOI	GRGCYC	1 cut(s)	453
FspBI	CTAG	3 cut(s)	390, 498, 617
Hin1II	CATG	5 cut(s)	367, 449, 459, 566, 779
HindIII	AAGCTT	1 cut(s)	426
HinfI	GANTC	3 cut(s)	183, 386, 745
HphI	GGTGA	2 cut(s)	703, 829
Hpy166II	GTNNAC	2 cut(s)	403, 869
Hpy188I	TCNGA	3 cut(s)	115, 174, 642
Hpy188III	TCNNGA	3 cut(s)	213, 390, 422
Hpy8I	GTNNAC	2 cut(s)	403, 869
HpyAV	CCTTC	1 cut(s)	614
HpyCH4III	ACNGT	2 cut(s)	414, 597
HpyCH4V	TGCA	4 cut(s)	4, 14, 125, 459
HpyF3I	CTNAG	2 cut(s)	211, 669
Hsp92II	CATG	5 cut(s)	367, 449, 459, 566, 779
Kzo9I	GATC	2 cut(s)	754, 819
LweI	GCATC	1 cut(s)	37
MaeI	CTAG	3 cut(s)	390, 498, 617
MaeIII	GTNAC	3 cut(s)	344, 440, 548
MalI	GATC	2 cut(s)	756, 821
MboI	GATC	2 cut(s)	754, 819
MboII	GAAGA	5 cut(s)	96, 125, 671, 700, 814
MflI	RGATCY	1 cut(s)	754
MhlI	GDGCHC	1 cut(s)	453
MluCI	AATT	5 cut(s)	167, 217, 329, 353, 540
MlyI	GAGTC	3 cut(s)	177, 380, 754
MnlI	CCTC	5 cut(s)	40, 220, 238, 428, 664
MseI	TTAA	5 cut(s)	165, 333, 518, 627, 663
MslI	CAYNNNNRTG	1 cut(s)	777
MspCI	CTTAAG	1 cut(s)	517
NcoI	CCATGG	2 cut(s)	363, 775
NdeI	CATATG	1 cut(s)	262
NdeII	GATC	2 cut(s)	754, 819
NlaIII	CATG	5 cut(s)	367, 449, 459, 566, 779
NlaIV	GGNNCC	2 cut(s)	756, 809
NmuCI	GTSAC	2 cut(s)	344, 440
OliI	CACNNNNGTG	1 cut(s)	777
PflMI	CCANNNNNTGG	1 cut(s)	364
PleI	GAGTC	3 cut(s)	177, 380, 753
PpsI	GAGTC	3 cut(s)	177, 380, 753
PshBI	ATTAAT	1 cut(s)	627
PsiI	TTATAA	2 cut(s)	303, 509
Psp124BI	GAGCTC	1 cut(s)	453
PspN4I	GGNNCC	2 cut(s)	756, 809
PstI	CTGCAG	1 cut(s)	16
PsuI	RGATCY	1 cut(s)	754
RsaI	GTAC	2 cut(s)	495, 587
RsaNI	GTAC	2 cut(s)	494, 586
RseI	CAYNNNNRTG	1 cut(s)	777
SacI	GAGCTC	1 cut(s)	453
SaqAI	TTAA	5 cut(s)	165, 333, 518, 627, 663
Sau3AI	GATC	2 cut(s)	754, 819
SchI	GAGTC	3 cut(s)	177, 380, 754
SduI	GDGCHC	1 cut(s)	453
SfaNI	GCATC	1 cut(s)	37
SfcI	CTRYAG	1 cut(s)	12
SmiMI	CAYNNNNRTG	1 cut(s)	777
SmlI	CTYRAG	1 cut(s)	517
SmoI	CTYRAG	1 cut(s)	517
Sse9I	AATT	5 cut(s)	167, 217, 329, 353, 540
SspMI	CTAG	3 cut(s)	390, 498, 617
SstI	GAGCTC	1 cut(s)	453
StyI	CCWWGG	3 cut(s)	363, 497, 775
TaaI	ACNGT	2 cut(s)	414, 597
TaqI	TCGA	1 cut(s)	186
TasI	AATT	5 cut(s)	167, 217, 329, 353, 540
Tru1I	TTAA	5 cut(s)	165, 333, 518, 627, 663
Tru9I	TTAA	5 cut(s)	165, 333, 518, 627, 663
TscAI	CASTG	1 cut(s)	917
TseFI	GTSAC	2 cut(s)	344, 440
Tsp45I	GTSAC	2 cut(s)	344, 440
TspDTI	ATGAA	4 cut(s)	279, 548, 626, 806
TspRI	CASTG	1 cut(s)	917
Van91I	CCANNNNNTGG	1 cut(s)	364
Vha464I	CTTAAG	1 cut(s)	517
VspI	ATTAAT	1 cut(s)	627
XapI	RAATTY	3 cut(s)	167, 329, 353
XbaI	TCTAGA	1 cut(s)	389
XcmI	CCANNNNNNNNNTGG	1 cut(s)	879
XmaJI	CCTAGG	1 cut(s)	497
XspI	CTAG	3 cut(s)	390, 498, 617

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.