RchiOBHm_Chr2g0137541

F-box kelch-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
55322749 .. 55323832
1084 bp
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UTR
Exon/CDS
Intron
PRQ50828

Sequence Viewer

Length: 891 bp
ATGGTTCAAGCACGTGTTCCTCCCAACCAAGGTGTCTTCAAGTGCCTGAAAGAACCGCTGTACCGGTTCACCGTCTGTGAGCCGGATTCGGGTGATTGGGGAGAGTTCCCGCCAATTTCTGTTTTCCCCGGTGGGTCTCTACCCATGTTTTGCCAGTTTGCAGCGGTTGGGACCAACTTGGTGGTGGTCGGCGGTTTAGACCCGGTGACCTGGGCGAGCTGTAAATCGGTCTTCGTCTACAACTTCATGACTGCCACGTGGCGGCGCGGAACCGATATGCCGGGTGGGTCCCGCACATTTTTTGGGTGTGCGTCCGACTCTAACCGGATGGTGTTCGTCGCCGGCGGACACGATGGCGAGAAGAATGCATTGAGATCGGCAATGGCGTATGACGTGGCAAAAGACGAGTGGATTCTATTGCCTAACATGGAAAGAGAGTGCGACGAATGCAAGGTAGTTTTCCAGCATGGCAAGCTCCACGTCATTGGTGGCTATTGCACCGAAATGCAAGGCCGCTTTGAGAGAAGCGCCGAGACATTCGACACCTCCACATGGCAGTGGGATTGTGTACAAGAGGACTTCTTACAGATCAGCATGTGTCCACGGACCTGCGTCGCTGGCGATGACGGGGCAACGTACATGTGTTGTGATGGTAATGTGATCAAACAAACATGTGGCTTGTGGCAAACCGTGGCCGAGCTGCCAGCTCATGTGCGCAATCCGGCTTCATTGACAGCGTGGCACGGTAAGCTATTAGTGATTGGATGTGCCGGGTTCGGTGAGCCCCACATGGCTTACATGTTTAATCTGGAAAATCACACCTGGAGTAAGGTAGACACCCCTGAGAAGTACTCTGGTCATGTACAATCAAGTTGCTATTTGGAGATTTAG

Protein Analysis

296

Amino Acids

32.86

Weight (kDa)

5.25

Isoelectric Point (pI)

37.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Kelch_FKB95 PF25210 46 - 159 4.6e-09 FKB95, Kelch-repeats domain
Kelch_1 PF01344 53 - 94 4.4e-08 Kelch motif
Kelch_KLHDC2_KLHL20_DRC7 PF24681 53 - 192 2.2e-10 KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_ATRN-LZTR1 PF24981 59 - 198 3.7e-07 Attractin/LZTR1 beta-propeller
Beta-prop_Calicin PF13964 61 - 191 1.8e-10 Calicin, beta-propeller domain
Kelch_1 PF01344 108 - 143 2.3e-07 Kelch motif
Kelch_FKB95 PF25210 124 - 217 1.6e-06 FKB95, Kelch-repeats domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 716
Acc36I ACCTGC 1 cut(s) 617
AccI GTMKAC 2 cut(s) 237, 834
AccII CGCG 1 cut(s) 267
AciI CCGC 9 cut(s) 56, 110, 164, 192, 262, 267, 292, 345, 514
AcoI YGGCCR 1 cut(s) 693
AcvI CACGTG 2 cut(s) 14, 258
AfaI GTAC 5 cut(s) 62, 570, 638, 851, 864
AfiI CCNNNNNNNGG 4 cut(s) 29, 89, 261, 552
AflIII ACRYGT 4 cut(s) 13, 639, 671, 798
AgeI ACCGGT 1 cut(s) 63
AgsI TTSAA 2 cut(s) 8, 40
AjiI CACGTC 2 cut(s) 394, 481
AjnI CCWGG 2 cut(s) 209, 821
AluBI AGCT 5 cut(s) 219, 475, 700, 707, 751
AluI AGCT 5 cut(s) 219, 475, 700, 707, 751
Alw26I GTCTC 2 cut(s) 141, 527
AoxI GGCC 2 cut(s) 511, 693
ApeKI GCWGC 2 cut(s) 161, 700
AsiGI ACCGGT 1 cut(s) 63
AspLEI GCGC 3 cut(s) 267, 530, 717
AspS9I GGNCC 3 cut(s) 171, 288, 606
AsuC2I CCSGG 4 cut(s) 129, 203, 282, 772
AsuHPI GGTGA 4 cut(s) 61, 104, 217, 791
AvaII GGWCC 3 cut(s) 171, 288, 606
BaeI ACNNNNGTAYC 2 cut(s) 44, 77
BanII GRGCYC 1 cut(s) 786
BbrPI CACGTG 2 cut(s) 14, 258
BbsI GAAGAC 2 cut(s) 28, 223
BbvI GCAGC 2 cut(s) 173, 687
BccI CCATC 3 cut(s) 322, 347, 644
BcgI CGANNNNNNTGC 4 cut(s) 347, 357, 381, 391
BciT130I CCWGG 2 cut(s) 211, 823
BclI TGATCA 1 cut(s) 660
BcnI CCSGG 4 cut(s) 129, 203, 282, 772
BcoDI GTCTC 2 cut(s) 141, 527
BfoI RGCGCY 1 cut(s) 531
BfuAI ACCTGC 1 cut(s) 617
BisI GCNGC 4 cut(s) 162, 263, 514, 701
BlsI GCNGC 4 cut(s) 163, 264, 515, 702
BmcAI AGTACT 1 cut(s) 851
Bme1390I CCNGG 6 cut(s) 129, 203, 211, 282, 772, 823
Bme18I GGWCC 3 cut(s) 171, 288, 606
BmgBI CACGTC 2 cut(s) 394, 481
BmgT120I GGNCC 3 cut(s) 171, 288, 606
BmiI GGNNCC 4 cut(s) 172, 271, 289, 290
BmrFI CCNGG 6 cut(s) 129, 203, 211, 282, 772, 823
BoxI GACNNNNGTC 1 cut(s) 611
BpiI GAAGAC 2 cut(s) 28, 223
BplI GAGNNNNNCTC 2 cut(s) 836, 868
BpmI CTGGAG 1 cut(s) 844
BpuMI CCSGG 4 cut(s) 129, 203, 282, 772
BsaAI YACGTR 2 cut(s) 14, 258
BsaI GGTCTC 1 cut(s) 141
BsaJI CCNNGG 5 cut(s) 28, 127, 210, 602, 690
BsaWI WCCGGW 2 cut(s) 63, 324
Bsc4I CCNNNNNNNGG 4 cut(s) 29, 89, 261, 552
Bse118I RCCGGY 2 cut(s) 63, 341
Bse1I ACTGG 1 cut(s) 154
Bse3DI GCAATG 1 cut(s) 387
BseBI CCWGG 2 cut(s) 211, 823
BseDI CCNNGG 5 cut(s) 28, 127, 210, 602, 690
BseGI GGATG 2 cut(s) 333, 770
BseLI CCNNNNNNNGG 4 cut(s) 29, 89, 261, 552
BseMI GCAATG 1 cut(s) 387
BseMII CTCAG 1 cut(s) 834
BseNI ACTGG 1 cut(s) 154
BseXI GCAGC 2 cut(s) 173, 687
Bsh1236I CGCG 1 cut(s) 267
BshFI GGCC 2 cut(s) 513, 695
BshTI ACCGGT 1 cut(s) 63
BsiSI CCGG 9 cut(s) 64, 83, 129, 203, 281, 325, 342, 722, 771
BslFI GGGAC 2 cut(s) 184, 274
BslI CCNNNNNNNGG 4 cut(s) 29, 89, 261, 552
BsmAI GTCTC 2 cut(s) 141, 527
BsmFI GGGAC 2 cut(s) 184, 274
BsmI GAATGC 2 cut(s) 370, 452
BsnI GGCC 2 cut(s) 513, 695
Bso31I GGTCTC 1 cut(s) 141
Bsp1286I GDGCHC 1 cut(s) 786
Bsp1407I TGTACA 2 cut(s) 568, 862
Bsp143I GATC 3 cut(s) 374, 588, 660
BspACI CCGC 9 cut(s) 56, 110, 164, 192, 262, 267, 292, 345, 514
BspANI GGCC 2 cut(s) 513, 695
BspCNI CTCAG 1 cut(s) 835
BspFNI CGCG 1 cut(s) 267
BspHI TCATGA 1 cut(s) 246
BspLI GGNNCC 4 cut(s) 172, 271, 289, 290
BspMI ACCTGC 1 cut(s) 617
BspTNI GGTCTC 1 cut(s) 141
BsrDI GCAATG 1 cut(s) 387
BsrFI RCCGGY 2 cut(s) 63, 341
BsrGI TGTACA 2 cut(s) 568, 862
BsrI ACTGG 1 cut(s) 154
BssAI RCCGGY 2 cut(s) 63, 341
BssECI CCNNGG 5 cut(s) 28, 127, 210, 602, 690
BssMI GATC 3 cut(s) 374, 588, 660
BssT1I CCWWGG 1 cut(s) 28
Bst2UI CCWGG 2 cut(s) 211, 823
Bst4CI ACNGT 3 cut(s) 73, 691, 746
BstAUI TGTACA 2 cut(s) 568, 862
BstBAI YACGTR 2 cut(s) 14, 258
BstC8I GCNNGC 5 cut(s) 217, 343, 473, 619, 705
BstDEI CTNAG 1 cut(s) 843
BstDSI CCRYGG 2 cut(s) 602, 690
BstEII GGTNACC 1 cut(s) 205
BstF5I GGATG 2 cut(s) 333, 770
BstFNI CGCG 1 cut(s) 267
BstH2I RGCGCY 1 cut(s) 531
BstHHI GCGC 3 cut(s) 267, 530, 717
BstKTI GATC 3 cut(s) 377, 591, 663
BstMAI GTCTC 2 cut(s) 141, 527
BstMBI GATC 3 cut(s) 374, 588, 660
BstMWI GCNNNNNNNGC 4 cut(s) 447, 472, 618, 748
BstNI CCWGG 2 cut(s) 211, 823
BstNSI RCATGY 4 cut(s) 598, 643, 675, 802
BstPAI GACNNNNGTC 1 cut(s) 611
BstPI GGTNACC 1 cut(s) 205
BstSCI CCNGG 6 cut(s) 127, 201, 209, 280, 770, 821
BstUI CGCG 1 cut(s) 267
BstV1I GCAGC 2 cut(s) 173, 687
BstV2I GAAGAC 2 cut(s) 28, 223
BstXI CCANNNNNNTGG 2 cut(s) 181, 485
BsuRI GGCC 2 cut(s) 513, 695
BtgI CCRYGG 2 cut(s) 602, 690
BtgZI GCGATG 1 cut(s) 636
BtrI CACGTC 2 cut(s) 394, 481
BtsCI GGATG 2 cut(s) 333, 770
BtsI GCAGTG 1 cut(s) 563
BtsIMutI CAGTG 1 cut(s) 563
BveI ACCTGC 1 cut(s) 617
Cac8I GCNNGC 5 cut(s) 217, 343, 473, 619, 705
CciI TCATGA 1 cut(s) 246
CfoI GCGC 3 cut(s) 267, 530, 717
Cfr10I RCCGGY 2 cut(s) 63, 341
Cfr13I GGNCC 3 cut(s) 171, 288, 606
CseI GACGC 2 cut(s) 300, 601
Csp6I GTAC 5 cut(s) 61, 569, 637, 850, 863
CspAI ACCGGT 1 cut(s) 63
CviQI GTAC 5 cut(s) 61, 569, 637, 850, 863
DdeI CTNAG 1 cut(s) 843
DpnI GATC 3 cut(s) 376, 590, 662
DpnII GATC 3 cut(s) 374, 588, 660
EaeI YGGCCR 1 cut(s) 693
EciI GGCGGA 1 cut(s) 360
Eco130I CCWWGG 1 cut(s) 28
Eco24I GRGCYC 1 cut(s) 786
Eco31I GGTCTC 1 cut(s) 141
Eco47I GGWCC 3 cut(s) 171, 288, 606
Eco72I CACGTG 2 cut(s) 14, 258
Eco91I GGTNACC 1 cut(s) 205
EcoO109I RGGNCCY 1 cut(s) 288
EcoO65I GGTNACC 1 cut(s) 205
EcoRII CCWGG 2 cut(s) 209, 821
EcoT14I CCWWGG 1 cut(s) 28
EcoT22I ATGCAT 1 cut(s) 370
EcoT38I GRGCYC 1 cut(s) 786
ErhI CCWWGG 1 cut(s) 28
FaqI GGGAC 2 cut(s) 184, 274
FauI CCCGC 2 cut(s) 117, 299
FbaI TGATCA 1 cut(s) 660
FblI GTMKAC 2 cut(s) 237, 834
Fnu4HI GCNGC 4 cut(s) 162, 263, 514, 701
FokI GGATG 2 cut(s) 340, 777
FriOI GRGCYC 1 cut(s) 786
Fsp4HI GCNGC 4 cut(s) 162, 263, 514, 701
FspI TGCGCA 1 cut(s) 716
GlaI GCGC 3 cut(s) 266, 529, 716
GluI GCNGC 4 cut(s) 162, 263, 514, 701
GsuI CTGGAG 1 cut(s) 844
HaeII RGCGCY 1 cut(s) 531
HaeIII GGCC 2 cut(s) 513, 695
HapII CCGG 9 cut(s) 64, 83, 129, 203, 281, 325, 342, 722, 771
HgaI GACGC 2 cut(s) 300, 601
HhaI GCGC 3 cut(s) 267, 530, 717
Hin6I GCGC 3 cut(s) 265, 528, 715
HinP1I GCGC 3 cut(s) 265, 528, 715
HinfI GANTC 3 cut(s) 86, 317, 412
HpaII CCGG 9 cut(s) 64, 83, 129, 203, 281, 325, 342, 722, 771
HphI GGTGA 4 cut(s) 61, 104, 217, 791
Hpy166II GTNNAC 5 cut(s) 69, 238, 569, 602, 835
Hpy188I TCNGA 1 cut(s) 316
Hpy188III TCNNGA 2 cut(s) 247, 809
Hpy8I GTNNAC 5 cut(s) 69, 238, 569, 602, 835
Hpy99I CGWCG 3 cut(s) 341, 446, 617
HpyCH4III ACNGT 3 cut(s) 73, 691, 746
HpyCH4IV ACGT 5 cut(s) 13, 257, 393, 480, 635
HpyCH4V TGCA 5 cut(s) 161, 368, 450, 498, 508
HpyF10VI GCNNNNNNNGC 4 cut(s) 447, 472, 618, 748
HpyF3I CTNAG 1 cut(s) 843
HpySE526I ACGT 5 cut(s) 13, 257, 393, 480, 635
HspAI GCGC 3 cut(s) 265, 528, 715
KflI GGGWCCC 1 cut(s) 288
KroI GCCGGC 1 cut(s) 341
KroNI GCCGGC 1 cut(s) 343
Ksp22I TGATCA 1 cut(s) 660
Kzo9I GATC 3 cut(s) 374, 588, 660
LmnI GCTCC 1 cut(s) 480
Lsp1109I GCAGC 2 cut(s) 173, 687
MaeII ACGT 5 cut(s) 13, 257, 393, 480, 635
MaeIII GTNAC 1 cut(s) 205
MalI GATC 3 cut(s) 376, 590, 662
MboI GATC 3 cut(s) 374, 588, 660
MboII GAAGA 3 cut(s) 28, 223, 373
MhlI GDGCHC 1 cut(s) 786
MluCI AATT 1 cut(s) 114
MlyI GAGTC 1 cut(s) 311
MmeI TCCRAC 1 cut(s) 339
MnlI CCTC 3 cut(s) 30, 556, 568
Mph1103I ATGCAT 1 cut(s) 370
MreI CGCCGGCG 1 cut(s) 341
MroNI GCCGGC 1 cut(s) 341
MseI TTAA 1 cut(s) 804
MslI CAYNNNNRTG 2 cut(s) 503, 556
MspA1I CMGCKG 2 cut(s) 58, 164
MspI CCGG 9 cut(s) 64, 83, 129, 203, 281, 325, 342, 722, 771
MspR9I CCNGG 6 cut(s) 129, 203, 211, 282, 772, 823
Mva1269I GAATGC 2 cut(s) 370, 452
MvaI CCWGG 2 cut(s) 211, 823
MvnI CGCG 1 cut(s) 267
MwoI GCNNNNNNNGC 4 cut(s) 447, 472, 618, 748
NaeI GCCGGC 1 cut(s) 343
NciI CCSGG 4 cut(s) 129, 203, 282, 772
NdeII GATC 3 cut(s) 374, 588, 660
NgoMIV GCCGGC 1 cut(s) 341
NlaIV GGNNCC 4 cut(s) 172, 271, 289, 290
NmeAIII GCCGAG 2 cut(s) 556, 721
NmuCI GTSAC 1 cut(s) 205
NsbI TGCGCA 1 cut(s) 716
NsiI ATGCAT 1 cut(s) 370
NspI RCATGY 4 cut(s) 598, 643, 675, 802
PagI TCATGA 1 cut(s) 246
PciI ACATGT 3 cut(s) 639, 671, 798
PcsI WCGNNNNNNNCGW 1 cut(s) 383
PctI GAATGC 2 cut(s) 370, 452
PdiI GCCGGC 1 cut(s) 343
PfeI GAWTC 2 cut(s) 86, 412
PinAI ACCGGT 1 cut(s) 63
PkrI GCNGC 4 cut(s) 163, 264, 515, 702
PleI GAGTC 1 cut(s) 311
PmaCI CACGTG 2 cut(s) 14, 258
PmlI CACGTG 2 cut(s) 14, 258
PpsI GAGTC 1 cut(s) 311
Ppu21I YACGTR 2 cut(s) 14, 258
PpuMI RGGWCCY 1 cut(s) 288
PscI ACATGT 3 cut(s) 639, 671, 798
PshAI GACNNNNGTC 1 cut(s) 611
Psp5II RGGWCCY 1 cut(s) 288
Psp6I CCWGG 2 cut(s) 209, 821
PspCI CACGTG 2 cut(s) 14, 258
PspEI GGTNACC 1 cut(s) 205
PspGI CCWGG 2 cut(s) 209, 821
PspN4I GGNNCC 4 cut(s) 172, 271, 289, 290
PspPI GGNCC 3 cut(s) 171, 288, 606
PspPPI RGGWCCY 1 cut(s) 288
RsaI GTAC 5 cut(s) 62, 570, 638, 851, 864
RsaNI GTAC 5 cut(s) 61, 569, 637, 850, 863
RseI CAYNNNNRTG 2 cut(s) 503, 556
SaqAI TTAA 1 cut(s) 804
SatI GCNGC 4 cut(s) 162, 263, 514, 701
Sau3AI GATC 3 cut(s) 374, 588, 660
Sau96I GGNCC 3 cut(s) 171, 288, 606
ScaI AGTACT 1 cut(s) 851
SchI GAGTC 1 cut(s) 311
ScrFI CCNGG 6 cut(s) 129, 203, 211, 282, 772, 823
SduI GDGCHC 1 cut(s) 786
SgrAI CRCCGGYG 1 cut(s) 341
SinI GGWCC 3 cut(s) 171, 288, 606
SmiMI CAYNNNNRTG 2 cut(s) 503, 556
Sse9I AATT 1 cut(s) 114
SsiI CCGC 9 cut(s) 56, 110, 164, 192, 262, 267, 292, 345, 514
StyD4I CCNGG 6 cut(s) 127, 201, 209, 280, 770, 821
StyI CCWWGG 1 cut(s) 28
TaaI ACNGT 3 cut(s) 73, 691, 746
TaiI ACGT 5 cut(s) 16, 260, 396, 483, 638
TaqI TCGA 1 cut(s) 540
TaqII GACCGA 1 cut(s) 217
TasI AATT 1 cut(s) 114
TatI WGTACW 3 cut(s) 568, 849, 862
TauI GCSGC 2 cut(s) 265, 516
TfiI GAWTC 2 cut(s) 86, 412
Tru1I TTAA 1 cut(s) 804
Tru9I TTAA 1 cut(s) 804
TscAI CASTG 1 cut(s) 563
TseFI GTSAC 1 cut(s) 205
TseI GCWGC 2 cut(s) 161, 700
Tsp45I GTSAC 1 cut(s) 205
TspDTI ATGAA 2 cut(s) 235, 717
TspGWI ACGGA 1 cut(s) 619
TspRI CASTG 1 cut(s) 563
VpaK11BI GGWCC 3 cut(s) 171, 288, 606
XceI RCATGY 4 cut(s) 598, 643, 675, 802
XcmI CCANNNNNNNNNTGG 2 cut(s) 181, 485
XmiI GTMKAC 2 cut(s) 237, 834
ZrmI AGTACT 1 cut(s) 851
Zsp2I ATGCAT 1 cut(s) 370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.