Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0038827.1

Orthogroup ID

OG0005673

Physical Location & Seq

Genomic Coordinates Forward (+)

32 .. 676

Gene Structure 645 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0038827.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

atgactgccacgtggcggcgcggaaccgatatgccgggtgggtcccgcactttttttgggtgtgcgtctgactctaaccgcatggtgtacgtcgccggcggacacgatggcgagaagaatgcattgagatctgcaatggcgtatgacgtggcaaaagacgagtggattctattgcctaacatggaaagagattgcgacgaatgcaaggtagttttccagcatggcaagctccacgtcattggtggctattgcaccgaaatgcaaggccgctttgagagaagcgccgagacattcaacacctccacatggcagtgggattgtgtacaagaggacttcttacagatcagcatgtgtccacggacctgcgtcgctggcgatgacggggcaacgtacatgtgtcgcgatggtaatgtgatcaaacaaacatgtggcttgtggcaaaccgtggccgagctgccagctcatgtgcgcaatccggcttcattgacagcgtggcacggtaagctattagtgattggatgtgccgggttcggtgagccccacatggcttacatgtttaatctggaaaatcacacctggagtaaggtagatacccctgagaagtactctggtcatgtacaatcaagttgctatttggagatttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009966 GO:0009968 GO:0009987 GO:0010498 GO:0010646 GO:0010648 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0023051 GO:0023057 GO:0030162 GO:0030163 GO:0031323 GO:0031461 GO:0031625 GO:0032991 GO:0043161 GO:0043170 GO:0043455 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080036 GO:0080037 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234 GO:2000762

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box Kelch_1 Kelch_6

Protein Analysis

214

Amino Acids

23.98

Weight (kDa)

5.57

Isoelectric Point (pI)

41.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15670 AT1G80440
fragaria_vesca	FvH4_6g30930 FvH4_6g30950
malus_domestica	MD17G1197600.v1.1
prunus_persica	Prupe.3G073600_v2.0.a1
pyrus_communis	pycom17g20250
rosa_chinensis	RchiOBHm_Chr2g0137541 RchiOBHm_Chr2g0137561
rosa_laevigata	RLG00000019660 RLG00000019661
rosa_multiflora	Rmu_co8224660.1_g000001 Rmu_sc0000765.1_g000013 Rmu_sc0038827.1_g000001
rosa_roxburghii	Rroxscaffold_2G00107020 Rroxscaffold_2G00107030
rosa_rugosa	Rorug02G0343100 Rorug02G0343400
rosa_samantha	Rh2AG390700 Rh2AG391100 Rh2BG398400 Rh2BG398600 Rh2CG377900 Rh2CG378100 Rh2DG413400 Rh2DG413500
rosa_wichuraiana	Rw2G032010 Rw2G032020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	470
Acc36I	ACCTGC	1 cut(s)	371
AccII	CGCG	2 cut(s)	21, 402
AciI	CCGC	6 cut(s)	16, 21, 46, 79, 99, 268
AcoI	YGGCCR	1 cut(s)	447
AcvI	CACGTG	1 cut(s)	12
AfaI	GTAC	5 cut(s)	89, 324, 392, 605, 618
AfiI	CCNNNNNNNGG	2 cut(s)	15, 306
AflIII	ACRYGT	3 cut(s)	393, 425, 552
AgsI	TTSAA	1 cut(s)	295
AjiI	CACGTC	2 cut(s)	148, 235
AjnI	CCWGG	1 cut(s)	575
AluBI	AGCT	4 cut(s)	229, 454, 461, 505
AluI	AGCT	4 cut(s)	229, 454, 461, 505
Alw26I	GTCTC	1 cut(s)	281
AoxI	GGCC	2 cut(s)	265, 447
ApeKI	GCWGC	1 cut(s)	454
AspLEI	GCGC	3 cut(s)	21, 284, 471
AspS9I	GGNCC	2 cut(s)	42, 360
AsuC2I	CCSGG	2 cut(s)	36, 526
AsuHPI	GGTGA	1 cut(s)	545
AvaII	GGWCC	2 cut(s)	42, 360
BanII	GRGCYC	1 cut(s)	540
BbrPI	CACGTG	1 cut(s)	12
BbvI	GCAGC	1 cut(s)	441
BccI	CCATC	2 cut(s)	101, 398
BcgI	CGANNNNNNTGC	2 cut(s)	101, 135
BciT130I	CCWGG	1 cut(s)	577
BclI	TGATCA	1 cut(s)	414
BcnI	CCSGG	2 cut(s)	36, 526
BcoDI	GTCTC	1 cut(s)	281
BfoI	RGCGCY	1 cut(s)	285
BfuAI	ACCTGC	1 cut(s)	371
BglII	AGATCT	1 cut(s)	128
BisI	GCNGC	3 cut(s)	17, 268, 455
BlsI	GCNGC	3 cut(s)	18, 269, 456
BmcAI	AGTACT	1 cut(s)	605
Bme1390I	CCNGG	3 cut(s)	36, 526, 577
Bme18I	GGWCC	2 cut(s)	42, 360
BmgBI	CACGTC	2 cut(s)	148, 235
BmgT120I	GGNCC	2 cut(s)	42, 360
BmiI	GGNNCC	3 cut(s)	25, 43, 44
BmrFI	CCNGG	3 cut(s)	36, 526, 577
BoxI	GACNNNNGTC	1 cut(s)	365
BplI	GAGNNNNNCTC	2 cut(s)	590, 622
BpmI	CTGGAG	1 cut(s)	598
BpuMI	CCSGG	2 cut(s)	36, 526
BsaAI	YACGTR	1 cut(s)	12
BsaJI	CCNNGG	2 cut(s)	356, 444
Bsc4I	CCNNNNNNNGG	2 cut(s)	15, 306
Bse118I	RCCGGY	1 cut(s)	95
Bse3DI	GCAATG	1 cut(s)	141
BseBI	CCWGG	1 cut(s)	577
BseDI	CCNNGG	2 cut(s)	356, 444
BseGI	GGATG	1 cut(s)	524
BseLI	CCNNNNNNNGG	2 cut(s)	15, 306
BseMI	GCAATG	1 cut(s)	141
BseMII	CTCAG	1 cut(s)	588
BseXI	GCAGC	1 cut(s)	441
Bsh1236I	CGCG	2 cut(s)	21, 402
BshFI	GGCC	2 cut(s)	267, 449
BsiSI	CCGG	4 cut(s)	35, 96, 476, 525
BslFI	GGGAC	1 cut(s)	28
BslI	CCNNNNNNNGG	2 cut(s)	15, 306
BsmAI	GTCTC	1 cut(s)	281
BsmFI	GGGAC	1 cut(s)	28
BsmI	GAATGC	2 cut(s)	124, 206
BsnI	GGCC	2 cut(s)	267, 449
Bsp1286I	GDGCHC	1 cut(s)	540
Bsp1407I	TGTACA	2 cut(s)	322, 616
Bsp143I	GATC	3 cut(s)	128, 342, 414
Bsp68I	TCGCGA	1 cut(s)	402
BspACI	CCGC	6 cut(s)	16, 21, 46, 79, 99, 268
BspANI	GGCC	2 cut(s)	267, 449
BspCNI	CTCAG	1 cut(s)	589
BspFNI	CGCG	2 cut(s)	21, 402
BspLI	GGNNCC	3 cut(s)	25, 43, 44
BspMI	ACCTGC	1 cut(s)	371
BsrDI	GCAATG	1 cut(s)	141
BsrFI	RCCGGY	1 cut(s)	95
BsrGI	TGTACA	2 cut(s)	322, 616
BssAI	RCCGGY	1 cut(s)	95
BssECI	CCNNGG	2 cut(s)	356, 444
BssMI	GATC	3 cut(s)	128, 342, 414
Bst2UI	CCWGG	1 cut(s)	577
Bst4CI	ACNGT	2 cut(s)	445, 500
BstAUI	TGTACA	2 cut(s)	322, 616
BstBAI	YACGTR	1 cut(s)	12
BstC8I	GCNNGC	4 cut(s)	97, 227, 373, 459
BstDEI	CTNAG	1 cut(s)	597
BstDSI	CCRYGG	2 cut(s)	356, 444
BstF5I	GGATG	1 cut(s)	524
BstFNI	CGCG	2 cut(s)	21, 402
BstH2I	RGCGCY	1 cut(s)	285
BstHHI	GCGC	3 cut(s)	21, 284, 471
BstKTI	GATC	3 cut(s)	131, 345, 417
BstMAI	GTCTC	1 cut(s)	281
BstMBI	GATC	3 cut(s)	128, 342, 414
BstMWI	GCNNNNNNNGC	4 cut(s)	201, 226, 372, 502
BstNI	CCWGG	1 cut(s)	577
BstNSI	RCATGY	4 cut(s)	352, 397, 429, 556
BstPAI	GACNNNNGTC	1 cut(s)	365
BstSCI	CCNGG	3 cut(s)	34, 524, 575
BstUI	CGCG	2 cut(s)	21, 402
BstV1I	GCAGC	1 cut(s)	441
BstX2I	RGATCY	1 cut(s)	128
BstXI	CCANNNNNNTGG	1 cut(s)	239
BstYI	RGATCY	1 cut(s)	128
BsuRI	GGCC	2 cut(s)	267, 449
BtgI	CCRYGG	2 cut(s)	356, 444
BtgZI	GCGATG	2 cut(s)	390, 417
BtrI	CACGTC	2 cut(s)	148, 235
BtsCI	GGATG	1 cut(s)	524
BtsI	GCAGTG	1 cut(s)	317
BtsIMutI	CAGTG	1 cut(s)	317
BtuMI	TCGCGA	1 cut(s)	402
BveI	ACCTGC	1 cut(s)	371
Cac8I	GCNNGC	4 cut(s)	97, 227, 373, 459
CfoI	GCGC	3 cut(s)	21, 284, 471
Cfr10I	RCCGGY	1 cut(s)	95
Cfr13I	GGNCC	2 cut(s)	42, 360
CseI	GACGC	2 cut(s)	54, 355
Csp6I	GTAC	5 cut(s)	88, 323, 391, 604, 617
CviQI	GTAC	5 cut(s)	88, 323, 391, 604, 617
DdeI	CTNAG	1 cut(s)	597
DpnI	GATC	3 cut(s)	130, 344, 416
DpnII	GATC	3 cut(s)	128, 342, 414
EaeI	YGGCCR	1 cut(s)	447
EciI	GGCGGA	1 cut(s)	114
Eco24I	GRGCYC	1 cut(s)	540
Eco47I	GGWCC	2 cut(s)	42, 360
Eco72I	CACGTG	1 cut(s)	12
EcoO109I	RGGNCCY	1 cut(s)	42
EcoRII	CCWGG	1 cut(s)	575
EcoT22I	ATGCAT	1 cut(s)	124
EcoT38I	GRGCYC	1 cut(s)	540
FaqI	GGGAC	1 cut(s)	28
FauI	CCCGC	1 cut(s)	53
FbaI	TGATCA	1 cut(s)	414
Fnu4HI	GCNGC	3 cut(s)	17, 268, 455
FokI	GGATG	1 cut(s)	531
FriOI	GRGCYC	1 cut(s)	540
Fsp4HI	GCNGC	3 cut(s)	17, 268, 455
FspI	TGCGCA	1 cut(s)	470
GlaI	GCGC	3 cut(s)	20, 283, 470
GluI	GCNGC	3 cut(s)	17, 268, 455
GsuI	CTGGAG	1 cut(s)	598
HaeII	RGCGCY	1 cut(s)	285
HaeIII	GGCC	2 cut(s)	267, 449
HapII	CCGG	4 cut(s)	35, 96, 476, 525
HgaI	GACGC	2 cut(s)	54, 355
HhaI	GCGC	3 cut(s)	21, 284, 471
Hin6I	GCGC	3 cut(s)	19, 282, 469
HinP1I	GCGC	3 cut(s)	19, 282, 469
HinfI	GANTC	2 cut(s)	71, 166
HpaII	CCGG	4 cut(s)	35, 96, 476, 525
HphI	GGTGA	1 cut(s)	545
Hpy166II	GTNNAC	3 cut(s)	88, 323, 356
Hpy188I	TCNGA	1 cut(s)	70
Hpy188III	TCNNGA	2 cut(s)	401, 563
Hpy8I	GTNNAC	3 cut(s)	88, 323, 356
Hpy99I	CGWCG	3 cut(s)	95, 200, 371
HpyCH4III	ACNGT	2 cut(s)	445, 500
HpyCH4IV	ACGT	5 cut(s)	11, 90, 147, 234, 389
HpyCH4V	TGCA	5 cut(s)	122, 134, 204, 252, 262
HpyF10VI	GCNNNNNNNGC	4 cut(s)	201, 226, 372, 502
HpyF3I	CTNAG	1 cut(s)	597
HpySE526I	ACGT	5 cut(s)	11, 90, 147, 234, 389
HspAI	GCGC	3 cut(s)	19, 282, 469
KflI	GGGWCCC	1 cut(s)	42
KroI	GCCGGC	1 cut(s)	95
KroNI	GCCGGC	1 cut(s)	97
Ksp22I	TGATCA	1 cut(s)	414
Kzo9I	GATC	3 cut(s)	128, 342, 414
LmnI	GCTCC	1 cut(s)	234
Lsp1109I	GCAGC	1 cut(s)	441
MaeII	ACGT	5 cut(s)	11, 90, 147, 234, 389
MalI	GATC	3 cut(s)	130, 344, 416
MboI	GATC	3 cut(s)	128, 342, 414
MboII	GAAGA	1 cut(s)	127
MflI	RGATCY	1 cut(s)	128
MhlI	GDGCHC	1 cut(s)	540
MlyI	GAGTC	1 cut(s)	65
MnlI	CCTC	2 cut(s)	310, 322
Mph1103I	ATGCAT	1 cut(s)	124
MreI	CGCCGGCG	1 cut(s)	95
MroNI	GCCGGC	1 cut(s)	95
MseI	TTAA	1 cut(s)	558
MslI	CAYNNNNRTG	2 cut(s)	257, 310
MspI	CCGG	4 cut(s)	35, 96, 476, 525
MspR9I	CCNGG	3 cut(s)	36, 526, 577
Mva1269I	GAATGC	2 cut(s)	124, 206
MvaI	CCWGG	1 cut(s)	577
MvnI	CGCG	2 cut(s)	21, 402
MwoI	GCNNNNNNNGC	4 cut(s)	201, 226, 372, 502
NaeI	GCCGGC	1 cut(s)	97
NciI	CCSGG	2 cut(s)	36, 526
NdeII	GATC	3 cut(s)	128, 342, 414
NgoMIV	GCCGGC	1 cut(s)	95
NlaIV	GGNNCC	3 cut(s)	25, 43, 44
NmeAIII	GCCGAG	2 cut(s)	310, 475
NruI	TCGCGA	1 cut(s)	402
NsbI	TGCGCA	1 cut(s)	470
NsiI	ATGCAT	1 cut(s)	124
NspI	RCATGY	4 cut(s)	352, 397, 429, 556
PciI	ACATGT	3 cut(s)	393, 425, 552
PctI	GAATGC	2 cut(s)	124, 206
PdiI	GCCGGC	1 cut(s)	97
PfeI	GAWTC	1 cut(s)	166
PkrI	GCNGC	3 cut(s)	18, 269, 456
PleI	GAGTC	1 cut(s)	65
PmaCI	CACGTG	1 cut(s)	12
PmlI	CACGTG	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	65
Ppu21I	YACGTR	1 cut(s)	12
PpuMI	RGGWCCY	1 cut(s)	42
PscI	ACATGT	3 cut(s)	393, 425, 552
PshAI	GACNNNNGTC	1 cut(s)	365
Psp5II	RGGWCCY	1 cut(s)	42
Psp6I	CCWGG	1 cut(s)	575
PspCI	CACGTG	1 cut(s)	12
PspGI	CCWGG	1 cut(s)	575
PspN4I	GGNNCC	3 cut(s)	25, 43, 44
PspPI	GGNCC	2 cut(s)	42, 360
PspPPI	RGGWCCY	1 cut(s)	42
PsuI	RGATCY	1 cut(s)	128
RruI	TCGCGA	1 cut(s)	402
RsaI	GTAC	5 cut(s)	89, 324, 392, 605, 618
RsaNI	GTAC	5 cut(s)	88, 323, 391, 604, 617
RseI	CAYNNNNRTG	2 cut(s)	257, 310
SaqAI	TTAA	1 cut(s)	558
SatI	GCNGC	3 cut(s)	17, 268, 455
Sau3AI	GATC	3 cut(s)	128, 342, 414
Sau96I	GGNCC	2 cut(s)	42, 360
ScaI	AGTACT	1 cut(s)	605
SchI	GAGTC	1 cut(s)	65
ScrFI	CCNGG	3 cut(s)	36, 526, 577
SduI	GDGCHC	1 cut(s)	540
SgrAI	CRCCGGYG	1 cut(s)	95
SinI	GGWCC	2 cut(s)	42, 360
SmiMI	CAYNNNNRTG	2 cut(s)	257, 310
SsiI	CCGC	6 cut(s)	16, 21, 46, 79, 99, 268
StyD4I	CCNGG	3 cut(s)	34, 524, 575
TaaI	ACNGT	2 cut(s)	445, 500
TaiI	ACGT	5 cut(s)	14, 93, 150, 237, 392
TatI	WGTACW	3 cut(s)	322, 603, 616
TauI	GCSGC	2 cut(s)	19, 270
TfiI	GAWTC	1 cut(s)	166
Tru1I	TTAA	1 cut(s)	558
Tru9I	TTAA	1 cut(s)	558
TscAI	CASTG	1 cut(s)	317
TseI	GCWGC	1 cut(s)	454
TspDTI	ATGAA	1 cut(s)	471
TspGWI	ACGGA	1 cut(s)	373
TspRI	CASTG	1 cut(s)	317
VpaK11BI	GGWCC	2 cut(s)	42, 360
XceI	RCATGY	4 cut(s)	352, 397, 429, 556
XcmI	CCANNNNNNNNNTGG	1 cut(s)	239
ZrmI	AGTACT	1 cut(s)	605
Zsp2I	ATGCAT	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.