AT1G15670

kelch repeat-containing F-box family protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
5389952 .. 5391672
1721 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G15670.1

Sequence Viewer

Length: 1080 bp
ATGGAGCTTATTCCTGATCTTCCCGAAACTGTAGCCTACGAGTGTCTCCTACGCTCCTCCTACAAGCAATTCCCTCTTATGGCCTCTGTTTGCAAACTCTGGCAGCGAGAAATCAGCCTCTCTGATTTTTTCCGACACCGGAAAGCTTCAGGACATAGTCAAGAGCTTGTTGTCTTGTCTCAAGCTCGGGTCGACCCGGTTAAAGAACTCGTATCGGGTAATAAAACCATCCCCACCCCCGTGTACCGAATCTCGGTTCTTGAACTTGGTACCGGTCTAAGGAGCGAGCTGCCTCCGGTTCCAGGTCATTCCAACGGGTTGCCTCTGTTCTGCAGATTAGTCTCTGTCGGGTCGGATCTTGTTGTATTGTGCGGGCTTGACCCGGTTACATGGCGTACCTCTGATTCGGTCTTCGTTTTCAGCTTCTTGACCTCCACGTGGCGCGTCGGGAAGAGCATGCCAGGTGGACCGCGTTCCTTCTTTGCCTGCGCTTCGGATTCTCAACGGAACGTCTTTGTGGCTGGAGGACACGACGAAGACAAGAACGCGATGATGTCAGCTCTGGTGTATGACGTGGCAGAAGACAGATGGGCTTTCTTGCCGGATATGGGCCGTGAGCGAGACGAATGCACAGCTATTTTCCACGCTGGCAAATTCCATGTCATCGGTGGTTACTCCACGGAGGAACAAGGGCAATTTAGTAAAACTGCTGAATCGTTCGACGTCACCACATGGCGGTGGAGTCCACAAGGAGAAGAGTTTCTCTCTTCGGAGATGACTATGTGGCCTCCGATTTGTGCTGCCGGTGAAAACGGAGATTTATATGCTTGTTGTCGCCGTGATCTGATGATGATGAAAGATGACACGTGGTATAAAGTTGGGAATCTACCTGCTGACGTGTGCAATGTATCTTACGTGGCGATAAGGAGGTCTGGAAACCTGGTTGTGATCGGTTCGGCTCGGTACGGCGAACCAAGTGTAGGGTATAATTGGGATATGAGCAATTCTCGATGGTTAAAACTGGAAACACATGATAAATATGAAGGCCACGTTCAAGCTGGTTGCTTCTTGGAGATATAA

Protein Analysis

359

Amino Acids

40.18

Weight (kDa)

5.46

Isoelectric Point (pI)

48.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Kelch_FKB95 PF25210 97 - 208 3e-10 FKB95, Kelch-repeats domain
Kelch_KLHDC2_KLHL20_DRC7 PF24681 113 - 249 7.7e-11 KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_ATRN-LZTR1 PF24981 118 - 250 4.2e-07 Attractin/LZTR1 beta-propeller
Beta-prop_Calicin PF13964 119 - 250 2.5e-07 Calicin, beta-propeller domain
Kelch_FKB95 PF25210 183 - 280 3.3e-07 FKB95, Kelch-repeats domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 726
Acc36I ACCTGC 1 cut(s) 898
Acc65I GGTACC 1 cut(s) 269
AccB1I GGYRCC 1 cut(s) 269
AccI GTMKAC 1 cut(s) 192
AccII CGCG 3 cut(s) 444, 472, 548
AciI CCGC 3 cut(s) 372, 470, 736
AclWI GGATC 1 cut(s) 363
AcsI RAATTY 1 cut(s) 653
AcuI CTGAAG 1 cut(s) 132
AcvI CACGTG 2 cut(s) 438, 867
AcyI GRCGYC 1 cut(s) 723
AfaI GTAC 4 cut(s) 245, 271, 397, 965
AfiI CCNNNNNNNGG 8 cut(s) 79, 253, 279, 302, 438, 608, 735, 980
AflIII ACRYGT 2 cut(s) 864, 897
AgeI ACCGGT 1 cut(s) 272
AgsI TTSAA 2 cut(s) 263, 1055
AjiI CACGTC 2 cut(s) 574, 898
AjnI CCWGG 3 cut(s) 301, 460, 939
AleI CACNNNNGTG 1 cut(s) 239
AluBI AGCT 9 cut(s) 7, 146, 166, 185, 289, 423, 560, 635, 1058
AluI AGCT 9 cut(s) 7, 146, 166, 185, 289, 423, 560, 635, 1058
Alw26I GTCTC 4 cut(s) 50, 183, 346, 615
AlwI GGATC 1 cut(s) 363
Ama87I CYCGRG 1 cut(s) 186
AoxI GGCC 4 cut(s) 81, 610, 785, 1045
ApeKI GCWGC 3 cut(s) 103, 289, 800
ApoI RAATTY 1 cut(s) 653
ArsI GACNNNNNNTTYG 2 cut(s) 645, 677
AsiGI ACCGGT 1 cut(s) 272
Asp700I GAANNNNTTC 1 cut(s) 759
Asp718I GGTACC 1 cut(s) 269
AspLEI GCGC 2 cut(s) 444, 491
AspS9I GGNCC 2 cut(s) 467, 610
AsuC2I CCSGG 2 cut(s) 197, 383
AsuHPI GGTGA 2 cut(s) 718, 818
AvaI CYCGRG 1 cut(s) 186
AvaII GGWCC 1 cut(s) 467
BanI GGYRCC 1 cut(s) 269
BbrPI CACGTG 2 cut(s) 438, 867
BbsI GAAGAC 3 cut(s) 403, 543, 588
BbvI GCAGC 3 cut(s) 115, 276, 787
BccI CCATC 3 cut(s) 236, 582, 1005
BceAI ACGGC 3 cut(s) 597, 822, 982
BcgI CGANNNNNNTGC 2 cut(s) 609, 643
BciT130I CCWGG 3 cut(s) 303, 462, 941
BcnI CCSGG 2 cut(s) 197, 383
BcoDI GTCTC 4 cut(s) 50, 183, 346, 615
BfmI CTRYAG 2 cut(s) 30, 331
BfuAI ACCTGC 1 cut(s) 898
BisI GCNGC 3 cut(s) 104, 290, 801
BlsI GCNGC 3 cut(s) 105, 291, 802
Bme1390I CCNGG 5 cut(s) 197, 303, 383, 462, 941
Bme18I GGWCC 1 cut(s) 467
BmeT110I CYCGRG 1 cut(s) 186
BmgBI CACGTC 2 cut(s) 574, 898
BmgT120I GGNCC 2 cut(s) 467, 610
BmiI GGNNCC 2 cut(s) 271, 300
BmrFI CCNGG 5 cut(s) 197, 303, 383, 462, 941
BpiI GAAGAC 3 cut(s) 403, 543, 588
BplI GAGNNNNNCTC 4 cut(s) 749, 781, 991, 1023
BpmI CTGGAG 1 cut(s) 543
BpuEI CTTGAG 1 cut(s) 165
BpuMI CCSGG 2 cut(s) 197, 383
BsaAI YACGTR 3 cut(s) 438, 867, 916
BsaHI GRCGYC 1 cut(s) 723
BsaJI CCNNGG 1 cut(s) 678
BsaWI WCCGGW 3 cut(s) 138, 272, 295
Bsc4I CCNNNNNNNGG 8 cut(s) 79, 253, 279, 302, 438, 608, 735, 980
Bse118I RCCGGY 2 cut(s) 272, 803
Bse1I ACTGG 1 cut(s) 1026
Bse3DI GCAATG 1 cut(s) 910
BseBI CCWGG 3 cut(s) 303, 462, 941
BseDI CCNNGG 1 cut(s) 678
BseGI GGATG 1 cut(s) 228
BseLI CCNNNNNNNGG 8 cut(s) 79, 253, 279, 302, 438, 608, 735, 980
BseMI GCAATG 1 cut(s) 910
BseNI ACTGG 1 cut(s) 1026
BseRI GAGGAG 1 cut(s) 46
BseXI GCAGC 3 cut(s) 115, 276, 787
Bsh1236I CGCG 3 cut(s) 444, 472, 548
BshFI GGCC 4 cut(s) 83, 612, 787, 1047
BshNI GGYRCC 1 cut(s) 269
BshTI ACCGGT 1 cut(s) 272
BsiHKCI CYCGRG 1 cut(s) 186
BsiSI CCGG 7 cut(s) 139, 197, 273, 296, 383, 602, 804
BslI CCNNNNNNNGG 8 cut(s) 79, 253, 279, 302, 438, 608, 735, 980
BsmAI GTCTC 4 cut(s) 50, 183, 346, 615
BsmBI CGTCTC 1 cut(s) 615
BsmI GAATGC 1 cut(s) 632
BsnI GGCC 4 cut(s) 83, 612, 787, 1047
BsoBI CYCGRG 1 cut(s) 186
Bsp143I GATC 4 cut(s) 16, 355, 841, 948
BspACI CCGC 3 cut(s) 372, 470, 736
BspANI GGCC 4 cut(s) 83, 612, 787, 1047
BspFNI CGCG 3 cut(s) 444, 472, 548
BspLI GGNNCC 2 cut(s) 271, 300
BspMAI CTGCAG 1 cut(s) 335
BspMI ACCTGC 1 cut(s) 898
BspPI GGATC 1 cut(s) 363
BspQI GCTCTTC 1 cut(s) 446
BspT107I GGYRCC 1 cut(s) 269
BsrDI GCAATG 1 cut(s) 910
BsrFI RCCGGY 2 cut(s) 272, 803
BsrI ACTGG 1 cut(s) 1026
BssAI RCCGGY 2 cut(s) 272, 803
BssECI CCNNGG 1 cut(s) 678
BssMI GATC 4 cut(s) 16, 355, 841, 948
BssNI GRCGYC 1 cut(s) 723
Bst2UI CCWGG 3 cut(s) 303, 462, 941
Bst4CI ACNGT 1 cut(s) 31
Bst6I CTCTTC 3 cut(s) 446, 750, 772
BstACI GRCGYC 1 cut(s) 723
BstBAI YACGTR 3 cut(s) 438, 867, 916
BstC8I GCNNGC 5 cut(s) 287, 374, 458, 487, 649
BstDEI CTNAG 1 cut(s) 278
BstDSI CCRYGG 1 cut(s) 678
BstF5I GGATG 1 cut(s) 228
BstFNI CGCG 3 cut(s) 444, 472, 548
BstHHI GCGC 2 cut(s) 444, 491
BstKTI GATC 4 cut(s) 19, 358, 844, 951
BstMAI GTCTC 4 cut(s) 50, 183, 346, 615
BstMBI GATC 4 cut(s) 16, 355, 841, 948
BstNI CCWGG 3 cut(s) 303, 462, 941
BstNSI RCATGY 1 cut(s) 460
BstSCI CCNGG 5 cut(s) 195, 301, 381, 460, 939
BstSFI CTRYAG 2 cut(s) 30, 331
BstUI CGCG 3 cut(s) 444, 472, 548
BstV1I GCAGC 3 cut(s) 115, 276, 787
BstV2I GAAGAC 3 cut(s) 403, 543, 588
BstX2I RGATCY 1 cut(s) 355
BstYI RGATCY 1 cut(s) 355
BsuRI GGCC 4 cut(s) 83, 612, 787, 1047
BtgI CCRYGG 1 cut(s) 678
BtgZI GCGATG 1 cut(s) 563
BtrI CACGTC 2 cut(s) 574, 898
BtsCI GGATG 1 cut(s) 228
BveI ACCTGC 1 cut(s) 898
Cac8I GCNNGC 5 cut(s) 287, 374, 458, 487, 649
CfoI GCGC 2 cut(s) 444, 491
Cfr10I RCCGGY 2 cut(s) 272, 803
Cfr13I GGNCC 2 cut(s) 467, 610
CseI GACGC 1 cut(s) 433
CsiI ACCWGGT 1 cut(s) 939
Csp6I GTAC 4 cut(s) 244, 270, 396, 964
CspAI ACCGGT 1 cut(s) 272
CviAII CATG 5 cut(s) 390, 457, 659, 732, 1031
CviQI GTAC 4 cut(s) 244, 270, 396, 964
DdeI CTNAG 1 cut(s) 278
DpnI GATC 4 cut(s) 18, 357, 843, 950
DpnII GATC 4 cut(s) 16, 355, 841, 948
Eam1104I CTCTTC 3 cut(s) 446, 750, 772
EarI CTCTTC 3 cut(s) 446, 750, 772
Eco47I GGWCC 1 cut(s) 467
Eco57I CTGAAG 1 cut(s) 132
Eco72I CACGTG 2 cut(s) 438, 867
Eco88I CYCGRG 1 cut(s) 186
EcoRII CCWGG 3 cut(s) 301, 460, 939
Esp3I CGTCTC 1 cut(s) 615
FaeI CATG 5 cut(s) 393, 460, 662, 735, 1034
FatI CATG 5 cut(s) 389, 456, 658, 731, 1030
FauI CCCGC 1 cut(s) 365
FblI GTMKAC 1 cut(s) 192
Fnu4HI GCNGC 3 cut(s) 104, 290, 801
FokI GGATG 1 cut(s) 215
Fsp4HI GCNGC 3 cut(s) 104, 290, 801
GlaI GCGC 2 cut(s) 443, 490
GluI GCNGC 3 cut(s) 104, 290, 801
GsuI CTGGAG 1 cut(s) 543
HaeIII GGCC 4 cut(s) 83, 612, 787, 1047
HapII CCGG 7 cut(s) 139, 197, 273, 296, 383, 602, 804
HgaI GACGC 1 cut(s) 433
HhaI GCGC 2 cut(s) 444, 491
Hin1I GRCGYC 1 cut(s) 723
Hin1II CATG 5 cut(s) 393, 460, 662, 735, 1034
Hin6I GCGC 2 cut(s) 442, 489
HinP1I GCGC 2 cut(s) 442, 489
HincII GTYRAC 1 cut(s) 193
HindII GTYRAC 1 cut(s) 193
HindIII AAGCTT 1 cut(s) 144
HinfI GANTC 6 cut(s) 249, 404, 497, 713, 742, 883
HpaII CCGG 7 cut(s) 139, 197, 273, 296, 383, 602, 804
HphI GGTGA 2 cut(s) 718, 818
Hpy166II GTNNAC 4 cut(s) 193, 244, 467, 746
Hpy188I TCNGA 8 cut(s) 124, 134, 355, 403, 496, 772, 792, 846
Hpy188III TCNNGA 9 cut(s) 14, 23, 150, 161, 260, 427, 448, 933, 1008
Hpy8I GTNNAC 4 cut(s) 193, 244, 467, 746
Hpy99I CGWCG 3 cut(s) 449, 536, 725
HpyAV CCTTC 2 cut(s) 487, 1037
HpyCH4III ACNGT 1 cut(s) 31
HpyCH4IV ACGT 8 cut(s) 437, 510, 573, 723, 866, 897, 915, 1050
HpyCH4V TGCA 4 cut(s) 93, 333, 630, 903
HpyF3I CTNAG 1 cut(s) 278
HpySE526I ACGT 8 cut(s) 437, 510, 573, 723, 866, 897, 915, 1050
Hsp92I GRCGYC 1 cut(s) 723
Hsp92II CATG 5 cut(s) 393, 460, 662, 735, 1034
HspAI GCGC 2 cut(s) 442, 489
KpnI GGTACC 1 cut(s) 273
Kzo9I GATC 4 cut(s) 16, 355, 841, 948
LguI GCTCTTC 1 cut(s) 446
LmnI GCTCC 3 cut(s) 4, 59, 282
Lsp1109I GCAGC 3 cut(s) 115, 276, 787
MabI ACCWGGT 1 cut(s) 939
MaeII ACGT 8 cut(s) 437, 510, 573, 723, 866, 897, 915, 1050
MaeIII GTNAC 3 cut(s) 385, 671, 724
MalI GATC 4 cut(s) 18, 357, 843, 950
MboI GATC 4 cut(s) 16, 355, 841, 948
MboII GAAGA 7 cut(s) 11, 403, 463, 548, 593, 759, 767
MflI RGATCY 1 cut(s) 355
MluCI AATT 5 cut(s) 68, 653, 695, 988, 1003
MlyI GAGTC 1 cut(s) 751
MmeI TCCRAC 3 cut(s) 157, 333, 336
MroXI GAANNNNTTC 1 cut(s) 759
MseI TTAA 2 cut(s) 201, 1016
MslI CAYNNNNRTG 2 cut(s) 239, 736
MspI CCGG 7 cut(s) 139, 197, 273, 296, 383, 602, 804
MspR9I CCNGG 5 cut(s) 197, 303, 383, 462, 941
Mva1269I GAATGC 1 cut(s) 632
MvaI CCWGG 3 cut(s) 303, 462, 941
MvnI CGCG 3 cut(s) 444, 472, 548
NciI CCSGG 2 cut(s) 197, 383
NdeII GATC 4 cut(s) 16, 355, 841, 948
NlaIII CATG 5 cut(s) 393, 460, 662, 735, 1034
NlaIV GGNNCC 2 cut(s) 271, 300
NmuCI GTSAC 1 cut(s) 724
NspI RCATGY 1 cut(s) 460
OliI CACNNNNGTG 1 cut(s) 239
PaeI GCATGC 1 cut(s) 460
PciSI GCTCTTC 1 cut(s) 446
PctI GAATGC 1 cut(s) 632
PdmI GAANNNNTTC 1 cut(s) 759
PfeI GAWTC 5 cut(s) 249, 404, 497, 713, 883
PflFI GACNNNGTC 1 cut(s) 156
PinAI ACCGGT 1 cut(s) 272
PkrI GCNGC 3 cut(s) 105, 291, 802
PleI GAGTC 1 cut(s) 750
PmaCI CACGTG 2 cut(s) 438, 867
PmlI CACGTG 2 cut(s) 438, 867
PpsI GAGTC 1 cut(s) 750
Ppu21I YACGTR 3 cut(s) 438, 867, 916
Psp6I CCWGG 3 cut(s) 301, 460, 939
PspCI CACGTG 2 cut(s) 438, 867
PspGI CCWGG 3 cut(s) 301, 460, 939
PspN4I GGNNCC 2 cut(s) 271, 300
PspPI GGNCC 2 cut(s) 467, 610
PstI CTGCAG 1 cut(s) 335
PsuI RGATCY 1 cut(s) 355
PsyI GACNNNGTC 1 cut(s) 156
RsaI GTAC 4 cut(s) 245, 271, 397, 965
RsaNI GTAC 4 cut(s) 244, 270, 396, 964
RseI CAYNNNNRTG 2 cut(s) 239, 736
SalI GTCGAC 1 cut(s) 191
SapI GCTCTTC 1 cut(s) 446
SaqAI TTAA 2 cut(s) 201, 1016
SatI GCNGC 3 cut(s) 104, 290, 801
Sau3AI GATC 4 cut(s) 16, 355, 841, 948
Sau96I GGNCC 2 cut(s) 467, 610
SchI GAGTC 1 cut(s) 751
ScrFI CCNGG 5 cut(s) 197, 303, 383, 462, 941
SexAI ACCWGGT 1 cut(s) 939
SfcI CTRYAG 2 cut(s) 30, 331
SinI GGWCC 1 cut(s) 467
SmiMI CAYNNNNRTG 2 cut(s) 239, 736
SmlI CTYRAG 1 cut(s) 180
SmoI CTYRAG 1 cut(s) 180
SphI GCATGC 1 cut(s) 460
Sse9I AATT 5 cut(s) 68, 653, 695, 988, 1003
SsiI CCGC 3 cut(s) 372, 470, 736
StyD4I CCNGG 5 cut(s) 195, 301, 381, 460, 939
TaaI ACNGT 1 cut(s) 31
TaiI ACGT 8 cut(s) 440, 513, 576, 726, 869, 900, 918, 1053
TaqI TCGA 3 cut(s) 192, 720, 1009
TaqII GACCGA 1 cut(s) 397
TasI AATT 5 cut(s) 68, 653, 695, 988, 1003
TfiI GAWTC 5 cut(s) 249, 404, 497, 713, 883
Tru1I TTAA 2 cut(s) 201, 1016
Tru9I TTAA 2 cut(s) 201, 1016
TseFI GTSAC 1 cut(s) 724
TseI GCWGC 3 cut(s) 103, 289, 800
Tsp45I GTSAC 1 cut(s) 724
TspDTI ATGAA 2 cut(s) 869, 1056
TspGWI ACGGA 3 cut(s) 520, 695, 828
Tth111I GACNNNGTC 1 cut(s) 156
VpaK11BI GGWCC 1 cut(s) 467
XapI RAATTY 1 cut(s) 653
XceI RCATGY 1 cut(s) 460
XcmI CCANNNNNNNNNTGG 2 cut(s) 665, 1055
XmiI GTMKAC 1 cut(s) 192
XmnI GAANNNNTTC 1 cut(s) 759
ZraI GACGTC 1 cut(s) 724
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.