MD17G1197600.v1.1

F-box kelch-repeat protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Reverse (-)
23657340 .. 23658401
1062 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1197600.v1.1.491

Sequence Viewer

Length: 1062 bp
ATGGCGCTGATTTCTGGCCTGCCGGATGATATAGCATATGACTGTCTAAGTCGTGTTGAATACGACCAGTTTCCGACAGTGGCATCAGTGTGTAAAGGGTGGAAGGCGGAGGTTGAGCTGCCGGAGTTTCTTCAGCTTAGGAAGGTTGCTGGCCGCAGCCAAAGAATCATTGTGATGGTTCAAGCACATGTGTTCTCAAACCATGGTGTCTTCAAGTATCCGGATAGTCTGGTTTACCGGCTCACTATTTGTGAACCGGATTTGGGTAATTGGTCCGAGTTGCCTCTCCTTGCCTGTTTTGCCAATGGGCTACCCATGTTTTGCCAATTGGCAGCAGTTGGGTCCGATTTGGTGGTGATGGGTGGCTGGGACCCGCTTACGTGGACGATCTCCAAATCTGTGTTTATCTACAACTTTGTGTCCGGAGCGTGGCGGCGCGGGACTGATATGCCGGGTGGTGGCAGGATATTCTTTGGGTGCGCGGCGGATTCGGAGCGGATGGTGTATGTTGCCGGCGGACATGATGACGACAAGAATGCGTTGAGATCATCAATGGCGTATGACGTGGCAAAAGACGAGTGGATTATGTTGCCTGATATGGCAAGAGAGCGTGACGAATGTAAGGCGATTTTCCAGGGTGGCAAGCTCCACGTCATCGGCGGGTATTGCACCGAAATGCAAGGACGTTTCGAGAGGAGCACCGAGACATTCAACATTTCCACGTGGCTGTGGAATCCAGTACAAGAGGGCTTCTTACATGTCGCCACTTGTCCACGGACATGTGTGGACGGTGACGACGAGACAATGTACATGTGTCGTGGCGATGATGTGGTACAGCAAAAACACGACACGTGGAAAATCGTGGCCAAGCTGCCTGCTCAGGTACGTAATCCCGATTGCGTGACAGCCTGGCAGGGCAAAGCATTAGTGATAGGGAGTGCTGGGTTCGGTGAGCCCCACATGGCTCACGTACTGCATTTGGAAGATTACACGTGGACAAAACTTGAGACACCTCACAAGTACTCGGGCCATGTTCAATCAAGTTGTTATTTGGAGATATGA

Protein Analysis

354

Amino Acids

39.57

Weight (kDa)

5.37

Isoelectric Point (pI)

36.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Kelch_FKB95 PF25210 104 - 194 1.6e-06 FKB95, Kelch-repeats domain
Kelch_1 PF01344 110 - 151 1.6e-08 Kelch motif
Kelch_KLHDC2_KLHL20_DRC7 PF24681 110 - 276 1e-09 KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_ATRN-LZTR1 PF24981 115 - 245 5.1e-08 Attractin/LZTR1 beta-propeller
Beta-prop_Calicin PF13964 116 - 291 3.2e-10 Calicin, beta-propeller domain
Beta-prop_FBX42 PF13415 160 - 276 1.7e-06 FBX42, beta-propeller domain
Kelch_FKB95 PF25210 168 - 301 8.3e-09 FKB95, Kelch-repeats domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 496
AccII CGCG 2 cut(s) 438, 482
AccIII TCCGGA 2 cut(s) 220, 422
AcoI YGGCCR 2 cut(s) 151, 864
AcuI CTGAAG 1 cut(s) 116
AcvI CACGTG 3 cut(s) 723, 852, 993
AfaI GTAC 6 cut(s) 741, 809, 834, 885, 972, 1022
AfiI CCNNNNNNNGG 3 cut(s) 263, 429, 458
AflIII ACRYGT 6 cut(s) 187, 757, 779, 810, 849, 990
AgsI TTSAA 5 cut(s) 59, 182, 214, 712, 1037
AjiI CACGTC 2 cut(s) 565, 652
AjnI CCWGG 2 cut(s) 633, 908
AluBI AGCT 4 cut(s) 118, 136, 646, 871
AluI AGCT 4 cut(s) 118, 136, 646, 871
Alw21I GWGCWC 1 cut(s) 701
Alw26I GTCTC 3 cut(s) 698, 794, 1001
Ama87I CYCGRG 1 cut(s) 1024
Aor13HI TCCGGA 2 cut(s) 220, 422
AoxI GGCC 4 cut(s) 16, 151, 864, 1027
ApeKI GCWGC 4 cut(s) 118, 156, 332, 871
AspLEI GCGC 3 cut(s) 7, 438, 482
AspS9I GGNCC 4 cut(s) 273, 342, 370, 1027
AsuC2I CCSGG 1 cut(s) 453
AsuHPI GGTGA 3 cut(s) 367, 803, 962
AvaI CYCGRG 1 cut(s) 1024
AvaII GGWCC 3 cut(s) 273, 342, 370
BalI TGGCCA 1 cut(s) 866
BanII GRGCYC 1 cut(s) 957
BbrPI CACGTG 3 cut(s) 723, 852, 993
BbsI GAAGAC 1 cut(s) 202
Bbv12I GWGCWC 1 cut(s) 701
BbvI GCAGC 4 cut(s) 105, 168, 344, 858
BccI CCATC 3 cut(s) 169, 352, 493
BcgI CGANNNNNNTGC 2 cut(s) 518, 552
BciT130I CCWGG 2 cut(s) 635, 910
BciVI GTATCC 1 cut(s) 228
BcnI CCSGG 1 cut(s) 453
BcoDI GTCTC 3 cut(s) 698, 794, 1001
BfoI RGCGCY 1 cut(s) 8
BfuI GTATCC 1 cut(s) 228
BisI GCNGC 7 cut(s) 119, 154, 157, 333, 434, 483, 872
BlsI GCNGC 7 cut(s) 120, 155, 158, 334, 435, 484, 873
BmcAI AGTACT 1 cut(s) 1022
Bme1390I CCNGG 3 cut(s) 453, 635, 910
Bme18I GGWCC 3 cut(s) 273, 342, 370
BmeT110I CYCGRG 1 cut(s) 1024
BmgBI CACGTC 2 cut(s) 565, 652
BmgT120I GGNCC 4 cut(s) 273, 342, 370, 1027
BmiI GGNNCC 3 cut(s) 343, 371, 372
BmrFI CCNGG 3 cut(s) 453, 635, 910
BmsI GCATC 1 cut(s) 92
BpiI GAAGAC 1 cut(s) 202
Bpu10I CCTNAGC 2 cut(s) 137, 879
BpuEI CTTGAG 1 cut(s) 1025
BpuMI CCSGG 1 cut(s) 453
BsaAI YACGTR 6 cut(s) 381, 723, 852, 887, 970, 993
BsaJI CCNNGG 3 cut(s) 202, 634, 773
BsaWI WCCGGW 3 cut(s) 220, 256, 422
Bsc4I CCNNNNNNNGG 3 cut(s) 263, 429, 458
Bse118I RCCGGY 2 cut(s) 237, 512
Bse1I ACTGG 2 cut(s) 67, 737
BseAI TCCGGA 2 cut(s) 220, 422
BseBI CCWGG 2 cut(s) 635, 910
BseDI CCNNGG 3 cut(s) 202, 634, 773
BseGI GGATG 2 cut(s) 31, 504
BseLI CCNNNNNNNGG 3 cut(s) 263, 429, 458
BseMII CTCAG 1 cut(s) 893
BseNI ACTGG 2 cut(s) 67, 737
BseRI GAGGAG 1 cut(s) 709
BseXI GCAGC 4 cut(s) 105, 168, 344, 858
BseYI CCCAGC 2 cut(s) 366, 941
Bsh1236I CGCG 2 cut(s) 438, 482
BshFI GGCC 4 cut(s) 18, 153, 866, 1029
BsiHKAI GWGCWC 1 cut(s) 701
BsiHKCI CYCGRG 1 cut(s) 1024
BsiSI CCGG 8 cut(s) 23, 122, 221, 238, 257, 423, 452, 513
BslFI GGGAC 2 cut(s) 383, 454
BslI CCNNNNNNNGG 3 cut(s) 263, 429, 458
BsmAI GTCTC 3 cut(s) 698, 794, 1001
BsmFI GGGAC 2 cut(s) 383, 454
BsmI GAATGC 1 cut(s) 541
BsnI GGCC 4 cut(s) 18, 153, 866, 1029
BsoBI CYCGRG 1 cut(s) 1024
Bsp1286I GDGCHC 2 cut(s) 701, 957
Bsp13I TCCGGA 2 cut(s) 220, 422
Bsp1407I TGTACA 1 cut(s) 807
Bsp143I GATC 2 cut(s) 387, 545
Bsp19I CCATGG 1 cut(s) 202
BspANI GGCC 4 cut(s) 18, 153, 866, 1029
BspCNI CTCAG 1 cut(s) 892
BspEI TCCGGA 2 cut(s) 220, 422
BspFNI CGCG 2 cut(s) 438, 482
BspLI GGNNCC 3 cut(s) 343, 371, 372
BsrBI CCGCTC 1 cut(s) 496
BsrFI RCCGGY 2 cut(s) 237, 512
BsrGI TGTACA 1 cut(s) 807
BsrI ACTGG 2 cut(s) 67, 737
BssAI RCCGGY 2 cut(s) 237, 512
BssECI CCNNGG 3 cut(s) 202, 634, 773
BssMI GATC 2 cut(s) 387, 545
BssT1I CCWWGG 1 cut(s) 202
Bst2UI CCWGG 2 cut(s) 635, 910
Bst4CI ACNGT 3 cut(s) 44, 79, 791
BstAUI TGTACA 1 cut(s) 807
BstBAI YACGTR 6 cut(s) 381, 723, 852, 887, 970, 993
BstC8I GCNNGC 5 cut(s) 20, 151, 514, 644, 876
BstDEI CTNAG 3 cut(s) 47, 137, 879
BstDSI CCRYGG 2 cut(s) 202, 773
BstF5I GGATG 2 cut(s) 31, 504
BstFNI CGCG 2 cut(s) 438, 482
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 3 cut(s) 7, 438, 482
BstKTI GATC 2 cut(s) 390, 548
BstMAI GTCTC 3 cut(s) 698, 794, 1001
BstMBI GATC 2 cut(s) 387, 545
BstMWI GCNNNNNNNGC 2 cut(s) 299, 666
BstNI CCWGG 2 cut(s) 635, 910
BstNSI RCATGY 4 cut(s) 191, 761, 783, 814
BstSCI CCNGG 3 cut(s) 451, 633, 908
BstSNI TACGTA 1 cut(s) 887
BstUI CGCG 2 cut(s) 438, 482
BstV1I GCAGC 4 cut(s) 105, 168, 344, 858
BstV2I GAAGAC 1 cut(s) 202
BsuI GTATCC 1 cut(s) 228
BsuRI GGCC 4 cut(s) 18, 153, 866, 1029
BtgI CCRYGG 2 cut(s) 202, 773
BtgZI GCGATG 1 cut(s) 837
BtrI CACGTC 2 cut(s) 565, 652
BtsCI GGATG 2 cut(s) 31, 504
BtsIMutI CAGTG 2 cut(s) 84, 93
Cac8I GCNNGC 5 cut(s) 20, 151, 514, 644, 876
CfoI GCGC 3 cut(s) 7, 438, 482
Cfr10I RCCGGY 2 cut(s) 237, 512
Cfr13I GGNCC 4 cut(s) 273, 342, 370, 1027
Csp6I GTAC 6 cut(s) 740, 808, 833, 884, 971, 1021
CviAII CATG 9 cut(s) 188, 203, 316, 521, 758, 780, 811, 961, 1031
CviQI GTAC 6 cut(s) 740, 808, 833, 884, 971, 1021
DdeI CTNAG 3 cut(s) 47, 137, 879
DpnI GATC 2 cut(s) 389, 547
DpnII GATC 2 cut(s) 387, 545
EaeI YGGCCR 2 cut(s) 151, 864
EciI GGCGGA 3 cut(s) 122, 500, 531
Eco105I TACGTA 1 cut(s) 887
Eco130I CCWWGG 1 cut(s) 202
Eco24I GRGCYC 1 cut(s) 957
Eco47I GGWCC 3 cut(s) 273, 342, 370
Eco57I CTGAAG 1 cut(s) 116
Eco72I CACGTG 3 cut(s) 723, 852, 993
Eco88I CYCGRG 1 cut(s) 1024
EcoO109I RGGNCCY 1 cut(s) 370
EcoRII CCWGG 2 cut(s) 633, 908
EcoT14I CCWWGG 1 cut(s) 202
EcoT38I GRGCYC 1 cut(s) 957
ErhI CCWWGG 1 cut(s) 202
FaeI CATG 9 cut(s) 191, 206, 319, 524, 761, 783, 814, 964, 1034
FaqI GGGAC 2 cut(s) 383, 454
FatI CATG 9 cut(s) 187, 202, 315, 520, 757, 779, 810, 960, 1030
FauI CCCGC 3 cut(s) 381, 431, 653
FauNDI CATATG 1 cut(s) 37
Fnu4HI GCNGC 7 cut(s) 119, 154, 157, 333, 434, 483, 872
FokI GGATG 2 cut(s) 38, 511
FriOI GRGCYC 1 cut(s) 957
Fsp4HI GCNGC 7 cut(s) 119, 154, 157, 333, 434, 483, 872
GlaI GCGC 3 cut(s) 6, 437, 481
GluI GCNGC 7 cut(s) 119, 154, 157, 333, 434, 483, 872
GsaI CCCAGC 2 cut(s) 370, 945
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 4 cut(s) 18, 153, 866, 1029
HapII CCGG 8 cut(s) 23, 122, 221, 238, 257, 423, 452, 513
HhaI GCGC 3 cut(s) 7, 438, 482
Hin1II CATG 9 cut(s) 191, 206, 319, 524, 761, 783, 814, 964, 1034
Hin6I GCGC 3 cut(s) 5, 436, 480
HinP1I GCGC 3 cut(s) 5, 436, 480
HinfI GANTC 3 cut(s) 165, 488, 733
HpaII CCGG 8 cut(s) 23, 122, 221, 238, 257, 423, 452, 513
HphI GGTGA 3 cut(s) 367, 803, 962
Hpy166II GTNNAC 6 cut(s) 235, 254, 384, 773, 787, 996
Hpy188I TCNGA 4 cut(s) 75, 277, 346, 493
Hpy188III TCNNGA 4 cut(s) 221, 423, 691, 893
Hpy8I GTNNAC 6 cut(s) 235, 254, 384, 773, 787, 996
Hpy99I CGWCG 1 cut(s) 800
HpyAV CCTTC 2 cut(s) 97, 136
HpyCH4III ACNGT 3 cut(s) 44, 79, 791
HpyCH4IV ACGT 9 cut(s) 380, 564, 651, 685, 722, 851, 886, 969, 992
HpyCH4V TGCA 3 cut(s) 669, 679, 976
HpyF10VI GCNNNNNNNGC 2 cut(s) 299, 666
HpyF3I CTNAG 3 cut(s) 47, 137, 879
HpySE526I ACGT 9 cut(s) 380, 564, 651, 685, 722, 851, 886, 969, 992
Hsp92II CATG 9 cut(s) 191, 206, 319, 524, 761, 783, 814, 964, 1034
HspAI GCGC 3 cut(s) 5, 436, 480
KflI GGGWCCC 1 cut(s) 370
Kpn2I TCCGGA 2 cut(s) 220, 422
KroI GCCGGC 1 cut(s) 512
KroNI GCCGGC 1 cut(s) 514
Kzo9I GATC 2 cut(s) 387, 545
LmnI GCTCC 4 cut(s) 425, 493, 651, 696
Lsp1109I GCAGC 4 cut(s) 105, 168, 344, 858
LweI GCATC 1 cut(s) 92
MaeII ACGT 9 cut(s) 380, 564, 651, 685, 722, 851, 886, 969, 992
MaeIII GTNAC 3 cut(s) 611, 791, 901
MalI GATC 2 cut(s) 389, 547
MbiI CCGCTC 1 cut(s) 496
MboI GATC 2 cut(s) 387, 545
MboII GAAGA 3 cut(s) 122, 202, 995
MfeI CAATTG 1 cut(s) 326
MhlI GDGCHC 2 cut(s) 701, 957
MlsI TGGCCA 1 cut(s) 866
MluCI AATT 2 cut(s) 268, 326
MluNI TGGCCA 1 cut(s) 866
MmeI TCCRAC 1 cut(s) 98
MnlI CCTC 5 cut(s) 103, 294, 687, 739, 1023
Mox20I TGGCCA 1 cut(s) 866
MroI TCCGGA 2 cut(s) 220, 422
MroNI GCCGGC 1 cut(s) 512
MscI TGGCCA 1 cut(s) 866
MslI CAYNNNNRTG 4 cut(s) 88, 173, 674, 778
Msp20I TGGCCA 1 cut(s) 866
MspI CCGG 8 cut(s) 23, 122, 221, 238, 257, 423, 452, 513
MspR9I CCNGG 3 cut(s) 453, 635, 910
MunI CAATTG 1 cut(s) 326
Mva1269I GAATGC 1 cut(s) 541
MvaI CCWGG 2 cut(s) 635, 910
MvnI CGCG 2 cut(s) 438, 482
MwoI GCNNNNNNNGC 2 cut(s) 299, 666
NaeI GCCGGC 1 cut(s) 514
NciI CCSGG 1 cut(s) 453
NcoI CCATGG 1 cut(s) 202
NdeI CATATG 1 cut(s) 37
NdeII GATC 2 cut(s) 387, 545
NgoMIV GCCGGC 1 cut(s) 512
NlaIII CATG 9 cut(s) 191, 206, 319, 524, 761, 783, 814, 964, 1034
NlaIV GGNNCC 3 cut(s) 343, 371, 372
NmuCI GTSAC 3 cut(s) 611, 791, 901
NspI RCATGY 4 cut(s) 191, 761, 783, 814
PciI ACATGT 4 cut(s) 187, 757, 779, 810
PcsI WCGNNNNNNNCGW 1 cut(s) 795
PctI GAATGC 1 cut(s) 541
PdiI GCCGGC 1 cut(s) 514
PfeI GAWTC 3 cut(s) 165, 488, 733
PkrI GCNGC 7 cut(s) 120, 155, 158, 334, 435, 484, 873
PmaCI CACGTG 3 cut(s) 723, 852, 993
PmlI CACGTG 3 cut(s) 723, 852, 993
Ppu21I YACGTR 6 cut(s) 381, 723, 852, 887, 970, 993
PpuMI RGGWCCY 1 cut(s) 370
PscI ACATGT 4 cut(s) 187, 757, 779, 810
Psp5II RGGWCCY 1 cut(s) 370
Psp6I CCWGG 2 cut(s) 633, 908
PspCI CACGTG 3 cut(s) 723, 852, 993
PspFI CCCAGC 2 cut(s) 366, 941
PspGI CCWGG 2 cut(s) 633, 908
PspN4I GGNNCC 3 cut(s) 343, 371, 372
PspPI GGNCC 4 cut(s) 273, 342, 370, 1027
PspPPI RGGWCCY 1 cut(s) 370
RsaI GTAC 6 cut(s) 741, 809, 834, 885, 972, 1022
RsaNI GTAC 6 cut(s) 740, 808, 833, 884, 971, 1021
RseI CAYNNNNRTG 4 cut(s) 88, 173, 674, 778
SatI GCNGC 7 cut(s) 119, 154, 157, 333, 434, 483, 872
Sau3AI GATC 2 cut(s) 387, 545
Sau96I GGNCC 4 cut(s) 273, 342, 370, 1027
ScaI AGTACT 1 cut(s) 1022
ScrFI CCNGG 3 cut(s) 453, 635, 910
SduI GDGCHC 2 cut(s) 701, 957
SfaNI GCATC 1 cut(s) 92
SinI GGWCC 3 cut(s) 273, 342, 370
SmiMI CAYNNNNRTG 4 cut(s) 88, 173, 674, 778
SmlI CTYRAG 1 cut(s) 1004
SmoI CTYRAG 1 cut(s) 1004
SnaBI TACGTA 1 cut(s) 887
Sse9I AATT 2 cut(s) 268, 326
StyD4I CCNGG 3 cut(s) 451, 633, 908
StyI CCWWGG 1 cut(s) 202
TaaI ACNGT 3 cut(s) 44, 79, 791
TaiI ACGT 9 cut(s) 383, 567, 654, 688, 725, 854, 889, 972, 995
TaqI TCGA 1 cut(s) 690
TasI AATT 2 cut(s) 268, 326
TatI WGTACW 3 cut(s) 739, 807, 1020
TauI GCSGC 3 cut(s) 156, 436, 485
TfiI GAWTC 3 cut(s) 165, 488, 733
TscAI CASTG 2 cut(s) 84, 93
TseFI GTSAC 3 cut(s) 611, 791, 901
TseI GCWGC 4 cut(s) 118, 156, 332, 871
Tsp45I GTSAC 3 cut(s) 611, 791, 901
TspGWI ACGGA 1 cut(s) 790
TspRI CASTG 2 cut(s) 84, 93
VpaK11BI GGWCC 3 cut(s) 273, 342, 370
XceI RCATGY 4 cut(s) 191, 761, 783, 814
ZrmI AGTACT 1 cut(s) 1022
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.