Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8224660.1

Orthogroup ID

OG0005673

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 470

Gene Structure 469 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8224660.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 469 bp

atggttttgatttcaggtcttcctgatgaagtagtctacgattgtcttattcgtgtcaagtatgatcagtttccgactataacatctgtttctaaaggttggaaatcagaggttgagctaccagagtttcatcgcttcagaaagaatggtggttatggccaaaagctcattgtgatggttcaagcacgtgttcctcccaaccaaggtgtcttcaagtgcctgaaagaaccgctgtaccggttcaccgtctgtgagccggattcgggtgattggggagagttcccgccaatttctgttttccccggtgggtctctacccatgttttgccagtttgcagcggttgggaccaacttggtggtggtcggcggtttagacccggtgacctgggcgagctgtaaatcggtcttcgtctacaacttcatgactgccacgtggcggcgcggaaccgatatgccgggtgggtcccgca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009966 GO:0009968 GO:0009987 GO:0010498 GO:0010646 GO:0010648 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0023051 GO:0023057 GO:0030162 GO:0030163 GO:0031323 GO:0031461 GO:0031625 GO:0032991 GO:0043161 GO:0043170 GO:0043455 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080036 GO:0080037 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234 GO:2000762

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box Kelch_1 Kelch_6

Protein Analysis

156

Amino Acids

17.38

Weight (kDa)

8.29

Isoelectric Point (pI)

27.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15670 AT1G80440
fragaria_vesca	FvH4_6g30930 FvH4_6g30950
malus_domestica	MD17G1197600.v1.1
prunus_persica	Prupe.3G073600_v2.0.a1
pyrus_communis	pycom17g20250
rosa_chinensis	RchiOBHm_Chr2g0137541 RchiOBHm_Chr2g0137561
rosa_laevigata	RLG00000019660 RLG00000019661
rosa_multiflora	Rmu_co8224660.1_g000001 Rmu_sc0000765.1_g000013 Rmu_sc0038827.1_g000001
rosa_roxburghii	Rroxscaffold_2G00107020 Rroxscaffold_2G00107030
rosa_rugosa	Rorug02G0343100 Rorug02G0343400
rosa_samantha	Rh2AG390700 Rh2AG391100 Rh2BG398400 Rh2BG398600 Rh2CG377900 Rh2CG378100 Rh2DG413400 Rh2DG413500
rosa_wichuraiana	Rw2G032010 Rw2G032020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	36, 411
AccII	CGCG	1 cut(s)	441
AciI	CCGC	7 cut(s)	230, 284, 338, 366, 436, 441, 466
AcoI	YGGCCR	1 cut(s)	157
AcuI	CTGAAG	1 cut(s)	121
AcvI	CACGTG	2 cut(s)	188, 432
AfaI	GTAC	1 cut(s)	236
AfiI	CCNNNNNNNGG	3 cut(s)	203, 263, 435
AflIII	ACRYGT	1 cut(s)	187
AgeI	ACCGGT	1 cut(s)	237
AgsI	TTSAA	2 cut(s)	182, 214
AjnI	CCWGG	1 cut(s)	383
AluBI	AGCT	3 cut(s)	118, 166, 393
AluI	AGCT	3 cut(s)	118, 166, 393
Alw26I	GTCTC	1 cut(s)	315
AoxI	GGCC	1 cut(s)	157
ApeKI	GCWGC	1 cut(s)	335
AsiGI	ACCGGT	1 cut(s)	237
AspLEI	GCGC	1 cut(s)	441
AspS9I	GGNCC	2 cut(s)	345, 462
AsuC2I	CCSGG	3 cut(s)	303, 377, 456
AsuHPI	GGTGA	3 cut(s)	235, 278, 391
AvaII	GGWCC	2 cut(s)	345, 462
BaeI	ACNNNNGTAYC	2 cut(s)	218, 251
BalI	TGGCCA	1 cut(s)	159
BbrPI	CACGTG	2 cut(s)	188, 432
BbsI	GAAGAC	3 cut(s)	11, 202, 397
BbvI	GCAGC	1 cut(s)	347
BccI	CCATC	1 cut(s)	169
BciT130I	CCWGG	1 cut(s)	385
BclI	TGATCA	1 cut(s)	64
BcnI	CCSGG	3 cut(s)	303, 377, 456
BcoDI	GTCTC	1 cut(s)	315
BisI	GCNGC	2 cut(s)	336, 437
BlsI	GCNGC	2 cut(s)	337, 438
Bme1390I	CCNGG	4 cut(s)	303, 377, 385, 456
Bme18I	GGWCC	2 cut(s)	345, 462
BmgT120I	GGNCC	2 cut(s)	345, 462
BmiI	GGNNCC	4 cut(s)	346, 445, 463, 464
BmrFI	CCNGG	4 cut(s)	303, 377, 385, 456
BpiI	GAAGAC	3 cut(s)	11, 202, 397
BpuMI	CCSGG	3 cut(s)	303, 377, 456
BsaAI	YACGTR	2 cut(s)	188, 432
BsaI	GGTCTC	1 cut(s)	315
BsaJI	CCNNGG	3 cut(s)	202, 301, 384
BsaWI	WCCGGW	1 cut(s)	237
Bsc4I	CCNNNNNNNGG	3 cut(s)	203, 263, 435
Bse118I	RCCGGY	1 cut(s)	237
Bse1I	ACTGG	1 cut(s)	328
BseBI	CCWGG	1 cut(s)	385
BseDI	CCNNGG	3 cut(s)	202, 301, 384
BseLI	CCNNNNNNNGG	3 cut(s)	203, 263, 435
BseNI	ACTGG	1 cut(s)	328
BseXI	GCAGC	1 cut(s)	347
Bsh1236I	CGCG	1 cut(s)	441
BshFI	GGCC	1 cut(s)	159
BshTI	ACCGGT	1 cut(s)	237
BsiSI	CCGG	5 cut(s)	238, 257, 303, 377, 455
BslFI	GGGAC	2 cut(s)	358, 448
BslI	CCNNNNNNNGG	3 cut(s)	203, 263, 435
BsmAI	GTCTC	1 cut(s)	315
BsmFI	GGGAC	2 cut(s)	358, 448
BsnI	GGCC	1 cut(s)	159
Bso31I	GGTCTC	1 cut(s)	315
Bsp143I	GATC	1 cut(s)	64
BspACI	CCGC	7 cut(s)	230, 284, 338, 366, 436, 441, 466
BspANI	GGCC	1 cut(s)	159
BspFNI	CGCG	1 cut(s)	441
BspHI	TCATGA	1 cut(s)	420
BspLI	GGNNCC	4 cut(s)	346, 445, 463, 464
BspTNI	GGTCTC	1 cut(s)	315
BsrFI	RCCGGY	1 cut(s)	237
BsrI	ACTGG	1 cut(s)	328
BssAI	RCCGGY	1 cut(s)	237
BssECI	CCNNGG	3 cut(s)	202, 301, 384
BssMI	GATC	1 cut(s)	64
BssT1I	CCWWGG	1 cut(s)	202
Bst2UI	CCWGG	1 cut(s)	385
Bst4CI	ACNGT	1 cut(s)	247
BstBAI	YACGTR	2 cut(s)	188, 432
BstC8I	GCNNGC	1 cut(s)	391
BstEII	GGTNACC	1 cut(s)	379
BstFNI	CGCG	1 cut(s)	441
BstHHI	GCGC	1 cut(s)	441
BstKTI	GATC	1 cut(s)	67
BstMAI	GTCTC	1 cut(s)	315
BstMBI	GATC	1 cut(s)	64
BstNI	CCWGG	1 cut(s)	385
BstPI	GGTNACC	1 cut(s)	379
BstSCI	CCNGG	4 cut(s)	301, 375, 383, 454
BstUI	CGCG	1 cut(s)	441
BstV1I	GCAGC	1 cut(s)	347
BstV2I	GAAGAC	3 cut(s)	11, 202, 397
BstXI	CCANNNNNNTGG	1 cut(s)	355
BsuRI	GGCC	1 cut(s)	159
BtgZI	GCGATG	1 cut(s)	116
Cac8I	GCNNGC	1 cut(s)	391
CciI	TCATGA	1 cut(s)	420
CfoI	GCGC	1 cut(s)	441
Cfr10I	RCCGGY	1 cut(s)	237
Cfr13I	GGNCC	2 cut(s)	345, 462
Csp6I	GTAC	1 cut(s)	235
CspAI	ACCGGT	1 cut(s)	237
CviAII	CATG	2 cut(s)	319, 421
CviJI	RGCY	5 cut(s)	118, 159, 166, 256, 393
CviKI_1	RGCY	5 cut(s)	118, 159, 166, 256, 393
CviQI	GTAC	1 cut(s)	235
DpnI	GATC	1 cut(s)	66
DpnII	GATC	1 cut(s)	64
EaeI	YGGCCR	1 cut(s)	157
Eco130I	CCWWGG	1 cut(s)	202
Eco31I	GGTCTC	1 cut(s)	315
Eco47I	GGWCC	2 cut(s)	345, 462
Eco57I	CTGAAG	1 cut(s)	121
Eco72I	CACGTG	2 cut(s)	188, 432
Eco91I	GGTNACC	1 cut(s)	379
EcoO109I	RGGNCCY	1 cut(s)	462
EcoO65I	GGTNACC	1 cut(s)	379
EcoRII	CCWGG	1 cut(s)	383
EcoT14I	CCWWGG	1 cut(s)	202
ErhI	CCWWGG	1 cut(s)	202
FaeI	CATG	2 cut(s)	322, 424
FaiI	YATR	6 cut(s)	63, 80, 156, 320, 422, 452
FaqI	GGGAC	2 cut(s)	358, 448
FatI	CATG	2 cut(s)	318, 420
FauI	CCCGC	1 cut(s)	291
FbaI	TGATCA	1 cut(s)	64
FblI	GTMKAC	2 cut(s)	36, 411
Fnu4HI	GCNGC	2 cut(s)	336, 437
Fsp4HI	GCNGC	2 cut(s)	336, 437
GlaI	GCGC	1 cut(s)	440
GluI	GCNGC	2 cut(s)	336, 437
HaeIII	GGCC	1 cut(s)	159
HapII	CCGG	5 cut(s)	238, 257, 303, 377, 455
HhaI	GCGC	1 cut(s)	441
Hin1II	CATG	2 cut(s)	322, 424
Hin6I	GCGC	1 cut(s)	439
HinP1I	GCGC	1 cut(s)	439
HinfI	GANTC	1 cut(s)	260
HpaII	CCGG	5 cut(s)	238, 257, 303, 377, 455
HphI	GGTGA	3 cut(s)	235, 278, 391
Hpy166II	GTNNAC	3 cut(s)	37, 243, 412
Hpy188I	TCNGA	3 cut(s)	75, 109, 140
Hpy188III	TCNNGA	2 cut(s)	23, 421
Hpy8I	GTNNAC	3 cut(s)	37, 243, 412
HpyCH4III	ACNGT	1 cut(s)	247
HpyCH4IV	ACGT	2 cut(s)	187, 431
HpyCH4V	TGCA	1 cut(s)	335
HpySE526I	ACGT	2 cut(s)	187, 431
Hsp92II	CATG	2 cut(s)	322, 424
HspAI	GCGC	1 cut(s)	439
KflI	GGGWCCC	1 cut(s)	462
Ksp22I	TGATCA	1 cut(s)	64
Kzo9I	GATC	1 cut(s)	64
Lsp1109I	GCAGC	1 cut(s)	347
MaeII	ACGT	2 cut(s)	187, 431
MaeIII	GTNAC	1 cut(s)	379
MalI	GATC	1 cut(s)	66
MboI	GATC	1 cut(s)	64
MboII	GAAGA	3 cut(s)	11, 202, 397
MlsI	TGGCCA	1 cut(s)	159
MluCI	AATT	1 cut(s)	288
MluNI	TGGCCA	1 cut(s)	159
MmeI	TCCRAC	2 cut(s)	80, 98
MnlI	CCTC	2 cut(s)	103, 204
Mox20I	TGGCCA	1 cut(s)	159
MscI	TGGCCA	1 cut(s)	159
MslI	CAYNNNNRTG	1 cut(s)	173
Msp20I	TGGCCA	1 cut(s)	159
MspA1I	CMGCKG	2 cut(s)	232, 338
MspI	CCGG	5 cut(s)	238, 257, 303, 377, 455
MspR9I	CCNGG	4 cut(s)	303, 377, 385, 456
MvaI	CCWGG	1 cut(s)	385
MvnI	CGCG	1 cut(s)	441
NciI	CCSGG	3 cut(s)	303, 377, 456
NdeII	GATC	1 cut(s)	64
NlaIII	CATG	2 cut(s)	322, 424
NlaIV	GGNNCC	4 cut(s)	346, 445, 463, 464
NmuCI	GTSAC	1 cut(s)	379
PagI	TCATGA	1 cut(s)	420
PfeI	GAWTC	1 cut(s)	260
PinAI	ACCGGT	1 cut(s)	237
PkrI	GCNGC	2 cut(s)	337, 438
PmaCI	CACGTG	2 cut(s)	188, 432
PmlI	CACGTG	2 cut(s)	188, 432
Ppu21I	YACGTR	2 cut(s)	188, 432
PpuMI	RGGWCCY	1 cut(s)	462
Psp5II	RGGWCCY	1 cut(s)	462
Psp6I	CCWGG	1 cut(s)	383
PspCI	CACGTG	2 cut(s)	188, 432
PspEI	GGTNACC	1 cut(s)	379
PspGI	CCWGG	1 cut(s)	383
PspN4I	GGNNCC	4 cut(s)	346, 445, 463, 464
PspPI	GGNCC	2 cut(s)	345, 462
PspPPI	RGGWCCY	1 cut(s)	462
RsaI	GTAC	1 cut(s)	236
RsaNI	GTAC	1 cut(s)	235
RseI	CAYNNNNRTG	1 cut(s)	173
SatI	GCNGC	2 cut(s)	336, 437
Sau3AI	GATC	1 cut(s)	64
Sau96I	GGNCC	2 cut(s)	345, 462
ScrFI	CCNGG	4 cut(s)	303, 377, 385, 456
SinI	GGWCC	2 cut(s)	345, 462
SmiMI	CAYNNNNRTG	1 cut(s)	173
Sse9I	AATT	1 cut(s)	288
SsiI	CCGC	7 cut(s)	230, 284, 338, 366, 436, 441, 466
StyD4I	CCNGG	4 cut(s)	301, 375, 383, 454
StyI	CCWWGG	1 cut(s)	202
TaaI	ACNGT	1 cut(s)	247
TaiI	ACGT	2 cut(s)	190, 434
TaqII	GACCGA	1 cut(s)	391
TasI	AATT	1 cut(s)	288
TauI	GCSGC	1 cut(s)	439
TfiI	GAWTC	1 cut(s)	260
TseFI	GTSAC	1 cut(s)	379
TseI	GCWGC	1 cut(s)	335
Tsp45I	GTSAC	1 cut(s)	379
TspDTI	ATGAA	3 cut(s)	42, 119, 409
VpaK11BI	GGWCC	2 cut(s)	345, 462
XcmI	CCANNNNNNNNNTGG	1 cut(s)	355
XmiI	GTMKAC	2 cut(s)	36, 411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.