Rw2G032020

F-box kelch-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Forward (+)
52805291 .. 52806331
1041 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G032020.1

Sequence Viewer

Length: 1041 bp
ATGGAGCAGCTAATTCCTGGTCTACCTAATGATATTGCTCGAGATTGCTTGTTTCGTGTACCGTACAATTATCTGTCAGATGCTTCATATGTTTGCAAAGACTGGAACCAGGAGATTGAGCAACCGGAATTTCTCCGGCTACGAAAAGCCACCGGCCGTAGTCAAGCCATCGTTATAATGGCACAAGCACGGATTAACCCGAACCCGGGGAATCCTACTCCGCCGGAGTTAAAGCTCTCACTCTTTGAACCCAAGACGGGTAGCTGGGAGGAGCTGCCACTGTTCCCTGGGTTTTCCAAAGGGCTGCCTAGGTTTTGCCAAGTGGTCGGAGTCGGGTCGGAATTGGTTGTGATCGGCGGGTTGGATCCATGCACTTGGGAAGTGTCTAATAATGTGTTTATTTACAATTTTGTGTCGGCCACTTGGCGGTGCGGAGCAGCCATGCCAGGTGTCAAGAGGTCGTTCTTCGGATGCACGTCCGACGAGGATAATCGGATGGTGTTTGTTGTCGGCGGACACGACAACGAGAAAAATGCTTTGAGATCCGCAATGGCATATGACGTGGCTAAAAACCAGTGGATTGTAATTGCTGACATGAAAAGAGAGCGCGACGAATGTAAGGCGATATGCCACCGTGGCAAGCTCTACGTCATCGGCGGATACCGTACTCAAACACAGGGCCAATTCGAAAGAAGTGTGGAGACCTTTGATCCTGCCACTTCCAAGTGGGATCAAGTCGAAGAGGATTTCTTGCCTGCCAATGTGTCTCCCAAGTCCTGCGTGGCAGGCCATGATGGAAAACTTTACATGTCTTCGGAAAGACACGTGGCCGCACGGGACGGTGCCACATGGCACGCAGTTTCTGAGATACCGGCTGATGTGGGTTCTGCAACTACCTGGCAGGATAAGCTGTTGGTGACTGGGTCCGGTGAGCTTCAAATGGCTTACGTTCTGGATTTGTATAGCTACTCCTGGACAAAAGTTGAGATGCCTGAGGAGTATAGAGGTCATGTTTACTCGAGCTGTTCCTTGGAAATCTAA

Protein Analysis

346

Amino Acids

38.76

Weight (kDa)

5.31

Isoelectric Point (pI)

44.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_ATRN-LZTR1 PF24981 82 - 256 3.3e-13 Attractin/LZTR1 beta-propeller
Kelch_FKB95 PF25210 94 - 194 5.7e-08 FKB95, Kelch-repeats domain
Kelch_1 PF01344 105 - 149 9.4e-07 Kelch motif
Kelch_KLHDC2_KLHL20_DRC7 PF24681 108 - 274 1.1e-15 KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_Calicin PF13964 116 - 248 1e-12 Calicin, beta-propeller domain
Beta-prop_FBX42 PF13415 156 - 263 7.5e-10 FBX42, beta-propeller domain
Kelch_1 PF01344 157 - 200 3.7e-08 Kelch motif
Kelch_FKB95 PF25210 167 - 280 6.1e-13 FKB95, Kelch-repeats domain
DUF6242_C PF25852 204 - 327 2.1e-06 DUF6242 beta propeller domain
Kelch_1 PF01344 205 - 246 1.6e-08 Kelch motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 176
AccB1I GGYRCC 1 cut(s) 842
AccI GTMKAC 1 cut(s) 22
AccII CGCG 1 cut(s) 609
AciI CCGC 8 cut(s) 221, 357, 427, 432, 513, 546, 657, 831
AclWI GGATC 5 cut(s) 359, 372, 537, 704, 738
AcoI YGGCCR 3 cut(s) 154, 417, 828
AcsI RAATTY 1 cut(s) 128
AcvI CACGTG 1 cut(s) 826
AfaI GTAC 3 cut(s) 60, 65, 667
AfiI CCNNNNNNNGG 4 cut(s) 205, 206, 257, 426
AflIII ACRYGT 2 cut(s) 807, 823
AgsI TTSAA 2 cut(s) 248, 938
AjiI CACGTC 2 cut(s) 477, 562
AjnI CCWGG 6 cut(s) 16, 108, 286, 445, 896, 971
AluBI AGCT 9 cut(s) 10, 235, 264, 274, 643, 910, 934, 966, 1023
AluI AGCT 9 cut(s) 10, 235, 264, 274, 643, 910, 934, 966, 1023
Alw26I GTCTC 2 cut(s) 695, 771
AlwI GGATC 5 cut(s) 359, 372, 537, 704, 738
AlwNI CAGNNNCTG 1 cut(s) 863
Ama87I CYCGRG 3 cut(s) 39, 205, 1018
AoxI GGCC 5 cut(s) 154, 417, 679, 787, 828
ApeKI GCWGC 4 cut(s) 7, 274, 304, 437
ApoI RAATTY 1 cut(s) 128
AspA2I CCTAGG 1 cut(s) 308
AspLEI GCGC 1 cut(s) 609
AspS9I GGNCC 2 cut(s) 679, 924
AsuC2I CCSGG 2 cut(s) 206, 207
AsuHPI GGTGA 2 cut(s) 928, 941
AsuII TTCGAA 1 cut(s) 687
AvaI CYCGRG 3 cut(s) 39, 205, 1018
AvaII GGWCC 1 cut(s) 924
AvrII CCTAGG 1 cut(s) 308
AxyI CCTNAGG 1 cut(s) 993
BamHI GGATCC 1 cut(s) 364
BanI GGYRCC 1 cut(s) 842
BbrPI CACGTG 1 cut(s) 826
BbsI GAAGAC 1 cut(s) 804
BbvI GCAGC 4 cut(s) 19, 261, 291, 449
BccI CCATC 3 cut(s) 176, 490, 788
BceAI ACGGC 1 cut(s) 141
BcgI CGANNNNNNTGC 2 cut(s) 515, 549
BciT130I CCWGG 6 cut(s) 18, 110, 288, 447, 898, 973
BciVI GTATCC 1 cut(s) 653
BcnI CCSGG 2 cut(s) 206, 207
BcoDI GTCTC 2 cut(s) 695, 771
BfaI CTAG 1 cut(s) 309
BfuI GTATCC 1 cut(s) 653
BglI GCCNNNNNGGC 1 cut(s) 636
BisI GCNGC 5 cut(s) 8, 275, 305, 438, 831
BlnI CCTAGG 1 cut(s) 308
BlsI GCNGC 5 cut(s) 9, 276, 306, 439, 832
Bme1390I CCNGG 8 cut(s) 18, 110, 206, 207, 288, 447, 898, 973
Bme18I GGWCC 1 cut(s) 924
BmeT110I CYCGRG 3 cut(s) 39, 205, 1018
BmgBI CACGTC 2 cut(s) 477, 562
BmgT120I GGNCC 2 cut(s) 679, 924
BmiI GGNNCC 4 cut(s) 107, 366, 844, 925
BmrFI CCNGG 8 cut(s) 18, 110, 206, 207, 288, 447, 898, 973
BmrI ACTGGG 1 cut(s) 930
BmsI GCATC 3 cut(s) 70, 461, 978
BmuI ACTGGG 1 cut(s) 930
BpiI GAAGAC 1 cut(s) 804
Bpu14I TTCGAA 1 cut(s) 687
BpuMI CCSGG 2 cut(s) 206, 207
BsaAI YACGTR 1 cut(s) 826
BsaI GGTCTC 1 cut(s) 695
BsaJI CCNNGG 7 cut(s) 205, 206, 286, 287, 308, 634, 1029
BsaWI WCCGGW 2 cut(s) 124, 926
Bsc4I CCNNNNNNNGG 4 cut(s) 205, 206, 257, 426
Bse118I RCCGGY 2 cut(s) 152, 871
Bse1I ACTGG 3 cut(s) 107, 574, 925
Bse21I CCTNAGG 1 cut(s) 993
Bse3DI GCAATG 1 cut(s) 555
BseBI CCWGG 6 cut(s) 18, 110, 288, 447, 898, 973
BseDI CCNNGG 7 cut(s) 205, 206, 286, 287, 308, 634, 1029
BseGI GGATG 2 cut(s) 476, 501
BseLI CCNNNNNNNGG 4 cut(s) 205, 206, 257, 426
BseMI GCAATG 1 cut(s) 555
BseMII CTCAG 2 cut(s) 855, 984
BseNI ACTGG 3 cut(s) 107, 574, 925
BseRI GAGGAG 2 cut(s) 284, 1010
BseX3I CGGCCG 1 cut(s) 154
BseXI GCAGC 4 cut(s) 19, 261, 291, 449
BseYI CCCAGC 1 cut(s) 264
Bsh1236I CGCG 1 cut(s) 609
Bsh1285I CGRYCG 1 cut(s) 157
BshFI GGCC 5 cut(s) 156, 419, 681, 789, 830
BshNI GGYRCC 1 cut(s) 842
BsiEI CGRYCG 1 cut(s) 157
BsiHKCI CYCGRG 3 cut(s) 39, 205, 1018
BsiSI CCGG 7 cut(s) 125, 136, 153, 206, 224, 872, 927
BslFI GGGAC 1 cut(s) 851
BslI CCNNNNNNNGG 4 cut(s) 205, 206, 257, 426
BsmAI GTCTC 2 cut(s) 695, 771
BsmFI GGGAC 1 cut(s) 851
BsnI GGCC 5 cut(s) 156, 419, 681, 789, 830
Bso31I GGTCTC 1 cut(s) 695
BsoBI CYCGRG 3 cut(s) 39, 205, 1018
Bsp119I TTCGAA 1 cut(s) 687
Bsp143I GATC 5 cut(s) 351, 364, 542, 709, 730
BspACI CCGC 8 cut(s) 221, 357, 427, 432, 513, 546, 657, 831
BspANI GGCC 5 cut(s) 156, 419, 681, 789, 830
BspCNI CTCAG 2 cut(s) 856, 985
BspFNI CGCG 1 cut(s) 609
BspLI GGNNCC 4 cut(s) 107, 366, 844, 925
BspPI GGATC 5 cut(s) 359, 372, 537, 704, 738
BspT104I TTCGAA 1 cut(s) 687
BspT107I GGYRCC 1 cut(s) 842
BspTNI GGTCTC 1 cut(s) 695
BsrDI GCAATG 1 cut(s) 555
BsrFI RCCGGY 2 cut(s) 152, 871
BsrI ACTGG 3 cut(s) 107, 574, 925
BssAI RCCGGY 2 cut(s) 152, 871
BssECI CCNNGG 7 cut(s) 205, 206, 286, 287, 308, 634, 1029
BssMI GATC 5 cut(s) 351, 364, 542, 709, 730
BssT1I CCWWGG 2 cut(s) 308, 1029
Bst2UI CCWGG 6 cut(s) 18, 110, 288, 447, 898, 973
Bst4CI ACNGT 5 cut(s) 63, 282, 635, 665, 842
Bst6I CTCTTC 1 cut(s) 735
BstBAI YACGTR 1 cut(s) 826
BstBI TTCGAA 1 cut(s) 687
BstC8I GCNNGC 4 cut(s) 641, 756, 787, 855
BstDEI CTNAG 2 cut(s) 864, 993
BstDSI CCRYGG 1 cut(s) 634
BstF5I GGATG 2 cut(s) 476, 501
BstFNI CGCG 1 cut(s) 609
BstHHI GCGC 1 cut(s) 609
BstKTI GATC 5 cut(s) 354, 367, 545, 712, 733
BstMAI GTCTC 2 cut(s) 695, 771
BstMBI GATC 5 cut(s) 351, 364, 542, 709, 730
BstMCI CGRYCG 1 cut(s) 157
BstMWI GCNNNNNNNGC 3 cut(s) 636, 786, 907
BstNI CCWGG 6 cut(s) 18, 110, 288, 447, 898, 973
BstNSI RCATGY 1 cut(s) 811
BstSCI CCNGG 8 cut(s) 16, 108, 204, 205, 286, 445, 896, 971
BstUI CGCG 1 cut(s) 609
BstV1I GCAGC 4 cut(s) 19, 261, 291, 449
BstV2I GAAGAC 1 cut(s) 804
BstX2I RGATCY 2 cut(s) 364, 542
BstXI CCANNNNNNTGG 1 cut(s) 375
BstYI RGATCY 2 cut(s) 364, 542
BstZI CGGCCG 1 cut(s) 154
Bsu36I CCTNAGG 1 cut(s) 993
BsuI GTATCC 1 cut(s) 653
BsuRI GGCC 5 cut(s) 156, 419, 681, 789, 830
BtgI CCRYGG 1 cut(s) 634
BtrI CACGTC 2 cut(s) 477, 562
BtsCI GGATG 2 cut(s) 476, 501
BtsIMutI CAGTG 2 cut(s) 278, 581
Cac8I GCNNGC 4 cut(s) 641, 756, 787, 855
CaiI CAGNNNCTG 1 cut(s) 863
CfoI GCGC 1 cut(s) 609
Cfr10I RCCGGY 2 cut(s) 152, 871
Cfr13I GGNCC 2 cut(s) 679, 924
Cfr9I CCCGGG 1 cut(s) 205
Csp6I GTAC 3 cut(s) 59, 64, 666
CviAII CATG 7 cut(s) 369, 442, 595, 791, 808, 849, 1010
CviQI GTAC 3 cut(s) 59, 64, 666
DdeI CTNAG 2 cut(s) 864, 993
DpnI GATC 5 cut(s) 353, 366, 544, 711, 732
DpnII GATC 5 cut(s) 351, 364, 542, 709, 730
EaeI YGGCCR 3 cut(s) 154, 417, 828
EagI CGGCCG 1 cut(s) 154
Eam1104I CTCTTC 1 cut(s) 735
EarI CTCTTC 1 cut(s) 735
EciI GGCGGA 3 cut(s) 210, 528, 672
EclXI CGGCCG 1 cut(s) 154
Eco130I CCWWGG 2 cut(s) 308, 1029
Eco31I GGTCTC 1 cut(s) 695
Eco47I GGWCC 1 cut(s) 924
Eco52I CGGCCG 1 cut(s) 154
Eco72I CACGTG 1 cut(s) 826
Eco81I CCTNAGG 1 cut(s) 993
Eco88I CYCGRG 3 cut(s) 39, 205, 1018
EcoRII CCWGG 6 cut(s) 16, 108, 286, 445, 896, 971
EcoT14I CCWWGG 2 cut(s) 308, 1029
ErhI CCWWGG 2 cut(s) 308, 1029
FaeI CATG 7 cut(s) 372, 445, 598, 794, 811, 852, 1013
FaqI GGGAC 1 cut(s) 851
FatI CATG 7 cut(s) 368, 441, 594, 790, 807, 848, 1009
FauI CCCGC 1 cut(s) 350
FauNDI CATATG 2 cut(s) 88, 556
FblI GTMKAC 1 cut(s) 22
Fnu4HI GCNGC 5 cut(s) 8, 275, 305, 438, 831
FokI GGATG 2 cut(s) 483, 508
Fsp4HI GCNGC 5 cut(s) 8, 275, 305, 438, 831
FspBI CTAG 1 cut(s) 309
GlaI GCGC 1 cut(s) 608
GluI GCNGC 5 cut(s) 8, 275, 305, 438, 831
GsaI CCCAGC 1 cut(s) 268
HaeIII GGCC 5 cut(s) 156, 419, 681, 789, 830
HapII CCGG 7 cut(s) 125, 136, 153, 206, 224, 872, 927
HhaI GCGC 1 cut(s) 609
Hin1II CATG 7 cut(s) 372, 445, 598, 794, 811, 852, 1013
Hin6I GCGC 1 cut(s) 607
HinP1I GCGC 1 cut(s) 607
HinfI GANTC 2 cut(s) 211, 330
HpaII CCGG 7 cut(s) 125, 136, 153, 206, 224, 872, 927
HphI GGTGA 2 cut(s) 928, 941
Hpy166II GTNNAC 3 cut(s) 23, 59, 1015
Hpy188I TCNGA 8 cut(s) 79, 329, 340, 470, 481, 495, 817, 865
Hpy188III TCNNGA 3 cut(s) 41, 454, 953
Hpy8I GTNNAC 3 cut(s) 23, 59, 1015
Hpy99I CGWCG 2 cut(s) 485, 614
HpyCH4III ACNGT 5 cut(s) 63, 282, 635, 665, 842
HpyCH4IV ACGT 5 cut(s) 476, 561, 648, 825, 948
HpyCH4V TGCA 4 cut(s) 96, 372, 474, 890
HpyF10VI GCNNNNNNNGC 3 cut(s) 636, 786, 907
HpyF3I CTNAG 2 cut(s) 864, 993
HpySE526I ACGT 5 cut(s) 476, 561, 648, 825, 948
Hsp92II CATG 7 cut(s) 372, 445, 598, 794, 811, 852, 1013
HspAI GCGC 1 cut(s) 607
Kzo9I GATC 5 cut(s) 351, 364, 542, 709, 730
LmnI GCTCC 3 cut(s) 4, 271, 434
Lsp1109I GCAGC 4 cut(s) 19, 261, 291, 449
LweI GCATC 3 cut(s) 70, 461, 978
MaeI CTAG 1 cut(s) 309
MaeII ACGT 5 cut(s) 476, 561, 648, 825, 948
MaeIII GTNAC 1 cut(s) 916
MalI GATC 5 cut(s) 353, 366, 544, 711, 732
MboI GATC 5 cut(s) 351, 364, 542, 709, 730
MboII GAAGA 3 cut(s) 457, 752, 804
MflI RGATCY 2 cut(s) 364, 542
MluCI AATT 7 cut(s) 12, 67, 128, 341, 406, 585, 683
MlyI GAGTC 1 cut(s) 339
MmeI TCCRAC 4 cut(s) 307, 318, 342, 504
MnlI CCTC 6 cut(s) 262, 450, 478, 736, 988, 998
MseI TTAA 2 cut(s) 195, 230
MspI CCGG 7 cut(s) 125, 136, 153, 206, 224, 872, 927
MspR9I CCNGG 8 cut(s) 18, 110, 206, 207, 288, 447, 898, 973
MvaI CCWGG 6 cut(s) 18, 110, 288, 447, 898, 973
MvnI CGCG 1 cut(s) 609
MwoI GCNNNNNNNGC 3 cut(s) 636, 786, 907
NciI CCSGG 2 cut(s) 206, 207
NdeI CATATG 2 cut(s) 88, 556
NdeII GATC 5 cut(s) 351, 364, 542, 709, 730
NlaIII CATG 7 cut(s) 372, 445, 598, 794, 811, 852, 1013
NlaIV GGNNCC 4 cut(s) 107, 366, 844, 925
NmuCI GTSAC 1 cut(s) 916
NspI RCATGY 1 cut(s) 811
NspV TTCGAA 1 cut(s) 687
PaeR7I CTCGAG 2 cut(s) 39, 1018
PasI CCCWGGG 1 cut(s) 287
PciI ACATGT 1 cut(s) 807
PcsI WCGNNNNNNNCGW 1 cut(s) 516
PfeI GAWTC 1 cut(s) 211
PflFI GACNNNGTC 1 cut(s) 922
PfoI TCCNGGA 1 cut(s) 971
PkrI GCNGC 5 cut(s) 9, 276, 306, 439, 832
PleI GAGTC 1 cut(s) 338
PmaCI CACGTG 1 cut(s) 826
PmlI CACGTG 1 cut(s) 826
PpsI GAGTC 1 cut(s) 338
Ppu21I YACGTR 1 cut(s) 826
PscI ACATGT 1 cut(s) 807
PsiI TTATAA 1 cut(s) 176
Psp6I CCWGG 6 cut(s) 16, 108, 286, 445, 896, 971
PspCI CACGTG 1 cut(s) 826
PspFI CCCAGC 1 cut(s) 264
PspGI CCWGG 6 cut(s) 16, 108, 286, 445, 896, 971
PspN4I GGNNCC 4 cut(s) 107, 366, 844, 925
PspPI GGNCC 2 cut(s) 679, 924
PspXI VCTCGAGB 1 cut(s) 1018
PstNI CAGNNNCTG 1 cut(s) 863
PsuI RGATCY 2 cut(s) 364, 542
PsyI GACNNNGTC 1 cut(s) 922
RsaI GTAC 3 cut(s) 60, 65, 667
RsaNI GTAC 3 cut(s) 59, 64, 666
SaqAI TTAA 2 cut(s) 195, 230
SatI GCNGC 5 cut(s) 8, 275, 305, 438, 831
Sau3AI GATC 5 cut(s) 351, 364, 542, 709, 730
Sau96I GGNCC 2 cut(s) 679, 924
SchI GAGTC 1 cut(s) 339
ScrFI CCNGG 8 cut(s) 18, 110, 206, 207, 288, 447, 898, 973
SfaNI GCATC 3 cut(s) 70, 461, 978
Sfr274I CTCGAG 2 cut(s) 39, 1018
SfuI TTCGAA 1 cut(s) 687
SinI GGWCC 1 cut(s) 924
SlaI CTCGAG 2 cut(s) 39, 1018
SmaI CCCGGG 1 cut(s) 207
SmlI CTYRAG 2 cut(s) 39, 1018
SmoI CTYRAG 2 cut(s) 39, 1018
Sse9I AATT 7 cut(s) 12, 67, 128, 341, 406, 585, 683
SsiI CCGC 8 cut(s) 221, 357, 427, 432, 513, 546, 657, 831
SspMI CTAG 1 cut(s) 309
StyD4I CCNGG 8 cut(s) 16, 108, 204, 205, 286, 445, 896, 971
StyI CCWWGG 2 cut(s) 308, 1029
TaaI ACNGT 5 cut(s) 63, 282, 635, 665, 842
TaiI ACGT 5 cut(s) 479, 564, 651, 828, 951
TaqI TCGA 4 cut(s) 40, 687, 738, 1019
TasI AATT 7 cut(s) 12, 67, 128, 341, 406, 585, 683
TauI GCSGC 1 cut(s) 833
TfiI GAWTC 1 cut(s) 211
Tru1I TTAA 2 cut(s) 195, 230
Tru9I TTAA 2 cut(s) 195, 230
TscAI CASTG 2 cut(s) 285, 581
TseFI GTSAC 1 cut(s) 916
TseI GCWGC 4 cut(s) 7, 274, 304, 437
Tsp45I GTSAC 1 cut(s) 916
TspDTI ATGAA 2 cut(s) 75, 611
TspGWI ACGGA 1 cut(s) 205
TspMI CCCGGG 1 cut(s) 205
TspRI CASTG 2 cut(s) 285, 581
Tth111I GACNNNGTC 1 cut(s) 922
VpaK11BI GGWCC 1 cut(s) 924
XapI RAATTY 1 cut(s) 128
XceI RCATGY 1 cut(s) 811
XcmI CCANNNNNNNNNTGG 2 cut(s) 175, 778
XhoI CTCGAG 2 cut(s) 39, 1018
XmaI CCCGGG 1 cut(s) 205
XmaJI CCTAGG 1 cut(s) 308
XmiI GTMKAC 1 cut(s) 22
XspI CTAG 1 cut(s) 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.