Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0005673

Physical Location & Seq

Genomic Coordinates Reverse (-)

5301381 .. 5302505

Gene Structure 1125 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G073600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGGTTCTGATTTCTGGTCTGCCTGACGATATAGCCTATGATTGTCTAATTCGTATCCAATATGATCAGTTCCCAGCTATGGCATCGGTTTGTAAGGGTTGGAAGGCTGAGGTTCAGCTGCCGGAGTTTCATCGGCTTAGGAAGGCTGGCGGCCATAGCCAAAAACTCATTGTGATGGTTCAATCACATGTTGTCTCAAATCATGGTGTTGGTGTTTTCAAGTGCCCGGATAGCCCGGTTTACCGGCTCACTCTTTGTGAACCGGATTTGGGTAACTGGTCTGAGTTGCCGCCGCTTGCCGGTTTTGCTACTGGGCTACCCATGTTTTGCCAACTGACAGCGGTCGGGTCGGATTTAGTGGTGATCGGGGGTTGGGATCCGATGTCATGGACCATCTCGAATTCCGTGTTTGTCTTCAACTTTGTGTCTGCCACGTGGAGGCGTGGAGCTGATATGCCAGGTGGTGCTCGGATTTTCTTTGGATGCTCGTCGGATTCGGATCGGATGGTGTTCGTTGCGGGTGGACATGATGATGAGAAGAATGCGTTGAGATCGGCAATAGCATATGACGTGGCGAAAGATGAGTGGATTTCATTGCCTGACATGGCAAGAGAACGCGACGAATGTAAGGCAATTTTCCAGCATGGCAAGCTCCATGTCATCGGTGGCTATTGTACAGAAATGCAAGGCCGTTTCGAAAGAAGCACCGAAACATTCAATTTCTCCACATGGCAATGGGACCAAGTACAAGACGACTTCTTGCTAGTCGCCACGTGTCCAAGGACATGCGTGGACGGAGATGACGAGACAATGTACATGTGTCGTGGCGGTGATGTGGTGAAACATAGACGCGGAACATGGAAATTCGTGGCGAAGCTGCCAGCTCAGGTGCGTAATCCAGCTTGTGTGACAGCATGGCAGGGCAAAGTGTTAGTGATTGGATGTGCAGGGTTTGGGGAGCCCCACATGGCTTACATACTACATTTGGACAATTACACATGGACAAAACTAGAGACCCCTCACAAGTACTCTGGTCATGTTCAGTCAAGTTGTCATTTGGAGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009966 GO:0009968 GO:0009987 GO:0010498 GO:0010646 GO:0010648 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0023051 GO:0023057 GO:0030162 GO:0030163 GO:0031323 GO:0031461 GO:0031625 GO:0032991 GO:0043161 GO:0043170 GO:0043455 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080036 GO:0080037 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234 GO:2000762

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box Kelch_1 Kelch_6

Protein Analysis

356

Amino Acids

39.67

Weight (kDa)

5.99

Isoelectric Point (pI)

37.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15670 AT1G80440
fragaria_vesca	FvH4_6g30930 FvH4_6g30950
malus_domestica	MD17G1197600.v1.1
prunus_persica	Prupe.3G073600_v2.0.a1
pyrus_communis	pycom17g20250
rosa_chinensis	RchiOBHm_Chr2g0137541 RchiOBHm_Chr2g0137561
rosa_laevigata	RLG00000019660 RLG00000019661
rosa_multiflora	Rmu_co8224660.1_g000001 Rmu_sc0000765.1_g000013 Rmu_sc0038827.1_g000001
rosa_roxburghii	Rroxscaffold_2G00107020 Rroxscaffold_2G00107030
rosa_rugosa	Rorug02G0343100 Rorug02G0343400
rosa_samantha	Rh2AG390700 Rh2AG391100 Rh2BG398400 Rh2BG398600 Rh2CG377900 Rh2CG378100 Rh2DG413400 Rh2DG413500
rosa_wichuraiana	Rw2G032010 Rw2G032020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	618, 852
AciI	CCGC	7 cut(s)	150, 290, 293, 341, 518, 828, 852
AclWI	GGATC	3 cut(s)	371, 384, 507
AcoI	YGGCCR	1 cut(s)	151
AcsI	RAATTY	2 cut(s)	400, 863
AcvI	CACGTG	2 cut(s)	435, 774
AfaI	GTAC	4 cut(s)	676, 747, 815, 1028
AfiI	CCNNNNNNNGG	4 cut(s)	79, 269, 299, 438
AflIII	ACRYGT	3 cut(s)	187, 773, 816
AgsI	TTSAA	4 cut(s)	182, 220, 418, 718
AjiI	CACGTC	1 cut(s)	571
AjnI	CCWGG	1 cut(s)	457
AluBI	AGCT	7 cut(s)	77, 118, 449, 652, 877, 884, 902
AluI	AGCT	7 cut(s)	77, 118, 449, 652, 877, 884, 902
Alw21I	GWGCWC	1 cut(s)	469
Alw26I	GTCTC	3 cut(s)	199, 800, 1007
AlwI	GGATC	3 cut(s)	371, 384, 507
AoxI	GGCC	2 cut(s)	151, 688
ApeKI	GCWGC	2 cut(s)	118, 877
ApoI	RAATTY	2 cut(s)	400, 863
AspS9I	GGNCC	2 cut(s)	390, 739
AsuC2I	CCSGG	2 cut(s)	227, 236
AsuHPI	GGTGA	3 cut(s)	373, 842, 850
AsuII	TTCGAA	1 cut(s)	696
AvaII	GGWCC	2 cut(s)	390, 739
BaeGI	GKGCMC	1 cut(s)	227
BamHI	GGATCC	1 cut(s)	376
BanII	GRGCYC	1 cut(s)	963
BbrPI	CACGTG	2 cut(s)	435, 774
BbsI	GAAGAC	1 cut(s)	406
Bbv12I	GWGCWC	1 cut(s)	469
BbvCI	CCTCAGC	1 cut(s)	108
BbvI	GCAGC	2 cut(s)	105, 864
BccI	CCATC	3 cut(s)	169, 401, 499
BceAI	ACGGC	1 cut(s)	675
BciT130I	CCWGG	1 cut(s)	459
BciVI	GTATCC	1 cut(s)	65
BclI	TGATCA	1 cut(s)	64
BcnI	CCSGG	2 cut(s)	227, 236
BcoDI	GTCTC	3 cut(s)	199, 800, 1007
BfaI	CTAG	2 cut(s)	764, 1010
BfuI	GTATCC	1 cut(s)	65
BisI	GCNGC	5 cut(s)	119, 151, 290, 293, 878
BlsI	GCNGC	5 cut(s)	120, 152, 291, 294, 879
BmcAI	AGTACT	1 cut(s)	1028
Bme1390I	CCNGG	3 cut(s)	227, 236, 459
Bme18I	GGWCC	2 cut(s)	390, 739
BmgBI	CACGTC	1 cut(s)	571
BmgT120I	GGNCC	2 cut(s)	390, 739
BmiI	GGNNCC	3 cut(s)	378, 740, 960
BmrFI	CCNGG	3 cut(s)	227, 236, 459
BmrI	ACTGGG	1 cut(s)	321
BmsI	GCATC	2 cut(s)	92, 473
BmuI	ACTGGG	1 cut(s)	321
BoxI	GACNNNNGTC	1 cut(s)	341
BpiI	GAAGAC	1 cut(s)	406
Bpu10I	CCTNAGC	3 cut(s)	108, 137, 885
Bpu14I	TTCGAA	1 cut(s)	696
BpuMI	CCSGG	2 cut(s)	227, 236
BsaAI	YACGTR	2 cut(s)	435, 774
BsaBI	GATNNNNATC	1 cut(s)	498
BsaI	GGTCTC	1 cut(s)	1007
BsaJI	CCNNGG	1 cut(s)	779
BsaWI	WCCGGW	1 cut(s)	262
Bsc4I	CCNNNNNNNGG	4 cut(s)	79, 269, 299, 438
Bse118I	RCCGGY	2 cut(s)	243, 299
Bse1I	ACTGG	2 cut(s)	281, 316
Bse3DI	GCAATG	2 cut(s)	593, 740
Bse8I	GATNNNNATC	1 cut(s)	498
BseBI	CCWGG	1 cut(s)	459
BseDI	CCNNGG	1 cut(s)	779
BseGI	GGATG	3 cut(s)	488, 510, 947
BseJI	GATNNNNATC	1 cut(s)	498
BseLI	CCNNNNNNNGG	4 cut(s)	79, 269, 299, 438
BseMI	GCAATG	2 cut(s)	593, 740
BseMII	CTCAG	3 cut(s)	99, 273, 899
BseNI	ACTGG	2 cut(s)	281, 316
BseSI	GKGCMC	1 cut(s)	227
BseXI	GCAGC	2 cut(s)	105, 864
BseYI	CCCAGC	1 cut(s)	73
BsgI	GTGCAG	1 cut(s)	966
Bsh1236I	CGCG	2 cut(s)	618, 852
Bsh1285I	CGRYCG	1 cut(s)	345
BshFI	GGCC	2 cut(s)	153, 690
BsiEI	CGRYCG	1 cut(s)	345
BsiHKAI	GWGCWC	1 cut(s)	469
BsiSI	CCGG	6 cut(s)	122, 227, 236, 244, 263, 300
BslFI	GGGAC	1 cut(s)	752
BslI	CCNNNNNNNGG	4 cut(s)	79, 269, 299, 438
BsmAI	GTCTC	3 cut(s)	199, 800, 1007
BsmFI	GGGAC	1 cut(s)	752
BsmI	GAATGC	1 cut(s)	547
BsnI	GGCC	2 cut(s)	153, 690
Bso31I	GGTCTC	1 cut(s)	1007
Bsp119I	TTCGAA	1 cut(s)	696
Bsp1286I	GDGCHC	3 cut(s)	227, 469, 963
Bsp1407I	TGTACA	2 cut(s)	674, 813
Bsp143I	GATC	5 cut(s)	64, 363, 376, 499, 551
BspACI	CCGC	7 cut(s)	150, 290, 293, 341, 518, 828, 852
BspANI	GGCC	2 cut(s)	153, 690
BspCNI	CTCAG	3 cut(s)	100, 274, 898
BspFNI	CGCG	2 cut(s)	618, 852
BspLI	GGNNCC	3 cut(s)	378, 740, 960
BspPI	GGATC	3 cut(s)	371, 384, 507
BspT104I	TTCGAA	1 cut(s)	696
BspTNI	GGTCTC	1 cut(s)	1007
BsrDI	GCAATG	2 cut(s)	593, 740
BsrFI	RCCGGY	2 cut(s)	243, 299
BsrGI	TGTACA	2 cut(s)	674, 813
BsrI	ACTGG	2 cut(s)	281, 316
BssAI	RCCGGY	2 cut(s)	243, 299
BssECI	CCNNGG	1 cut(s)	779
BssMI	GATC	5 cut(s)	64, 363, 376, 499, 551
BssT1I	CCWWGG	1 cut(s)	779
Bst2UI	CCWGG	1 cut(s)	459
BstAUI	TGTACA	2 cut(s)	674, 813
BstBAI	YACGTR	2 cut(s)	435, 774
BstBI	TTCGAA	1 cut(s)	696
BstC8I	GCNNGC	4 cut(s)	148, 297, 650, 882
BstDEI	CTNAG	4 cut(s)	108, 137, 282, 885
BstF5I	GGATG	3 cut(s)	488, 510, 947
BstFNI	CGCG	2 cut(s)	618, 852
BstKTI	GATC	5 cut(s)	67, 366, 379, 502, 554
BstMAI	GTCTC	3 cut(s)	199, 800, 1007
BstMBI	GATC	5 cut(s)	64, 363, 376, 499, 551
BstMCI	CGRYCG	1 cut(s)	345
BstMWI	GCNNNNNNNGC	4 cut(s)	156, 231, 305, 649
BstNI	CCWGG	1 cut(s)	459
BstNSI	RCATGY	3 cut(s)	191, 789, 820
BstPAI	GACNNNNGTC	1 cut(s)	341
BstSCI	CCNGG	3 cut(s)	225, 234, 457
BstSLI	GKGCMC	1 cut(s)	227
BstUI	CGCG	2 cut(s)	618, 852
BstV1I	GCAGC	2 cut(s)	105, 864
BstV2I	GAAGAC	1 cut(s)	406
BstX2I	RGATCY	1 cut(s)	376
BstYI	RGATCY	1 cut(s)	376
BsuI	GTATCC	1 cut(s)	65
BsuRI	GGCC	2 cut(s)	153, 690
BtrI	CACGTC	1 cut(s)	571
BtsCI	GGATG	3 cut(s)	488, 510, 947
Cac8I	GCNNGC	4 cut(s)	148, 297, 650, 882
Cfr10I	RCCGGY	2 cut(s)	243, 299
Cfr13I	GGNCC	2 cut(s)	390, 739
CseI	GACGC	1 cut(s)	858
Csp6I	GTAC	4 cut(s)	675, 746, 814, 1027
CviQI	GTAC	4 cut(s)	675, 746, 814, 1027
DdeI	CTNAG	4 cut(s)	108, 137, 282, 885
DpnI	GATC	5 cut(s)	66, 365, 378, 501, 553
DpnII	GATC	5 cut(s)	64, 363, 376, 499, 551
EaeI	YGGCCR	1 cut(s)	151
Eco130I	CCWWGG	1 cut(s)	779
Eco24I	GRGCYC	1 cut(s)	963
Eco31I	GGTCTC	1 cut(s)	1007
Eco47I	GGWCC	2 cut(s)	390, 739
Eco72I	CACGTG	2 cut(s)	435, 774
EcoRI	GAATTC	1 cut(s)	400
EcoRII	CCWGG	1 cut(s)	457
EcoT14I	CCWWGG	1 cut(s)	779
EcoT38I	GRGCYC	1 cut(s)	963
ErhI	CCWWGG	1 cut(s)	779
FaqI	GGGAC	1 cut(s)	752
FauI	CCCGC	1 cut(s)	511
FauNDI	CATATG	1 cut(s)	565
FbaI	TGATCA	1 cut(s)	64
Fnu4HI	GCNGC	5 cut(s)	119, 151, 290, 293, 878
FokI	GGATG	3 cut(s)	495, 517, 954
FriOI	GRGCYC	1 cut(s)	963
Fsp4HI	GCNGC	5 cut(s)	119, 151, 290, 293, 878
FspBI	CTAG	2 cut(s)	764, 1010
GluI	GCNGC	5 cut(s)	119, 151, 290, 293, 878
GsaI	CCCAGC	1 cut(s)	77
HaeIII	GGCC	2 cut(s)	153, 690
HapII	CCGG	6 cut(s)	122, 227, 236, 244, 263, 300
HgaI	GACGC	1 cut(s)	858
HinfI	GANTC	1 cut(s)	494
HpaII	CCGG	6 cut(s)	122, 227, 236, 244, 263, 300
HphI	GGTGA	3 cut(s)	373, 842, 850
Hpy166II	GTNNAC	4 cut(s)	241, 260, 524, 793
Hpy188I	TCNGA	8 cut(s)	9, 283, 352, 381, 471, 493, 499, 504
Hpy188III	TCNNGA	1 cut(s)	397
Hpy8I	GTNNAC	4 cut(s)	241, 260, 524, 793
Hpy99I	CGWCG	2 cut(s)	493, 623
HpyAV	CCTTC	2 cut(s)	97, 136
HpyCH4IV	ACGT	3 cut(s)	434, 570, 773
HpyCH4V	TGCA	2 cut(s)	685, 947
HpyF10VI	GCNNNNNNNGC	4 cut(s)	156, 231, 305, 649
HpyF3I	CTNAG	4 cut(s)	108, 137, 282, 885
HpySE526I	ACGT	3 cut(s)	434, 570, 773
Ksp22I	TGATCA	1 cut(s)	64
Kzo9I	GATC	5 cut(s)	64, 363, 376, 499, 551
LmnI	GCTCC	3 cut(s)	446, 657, 958
Lsp1109I	GCAGC	2 cut(s)	105, 864
LweI	GCATC	2 cut(s)	92, 473
MaeI	CTAG	2 cut(s)	764, 1010
MaeII	ACGT	3 cut(s)	434, 570, 773
MaeIII	GTNAC	2 cut(s)	272, 907
MalI	GATC	5 cut(s)	66, 365, 378, 501, 553
MboI	GATC	5 cut(s)	64, 363, 376, 499, 551
MboII	GAAGA	2 cut(s)	406, 550
MflI	RGATCY	1 cut(s)	376
MhlI	GDGCHC	3 cut(s)	227, 469, 963
MluCI	AATT	6 cut(s)	48, 400, 633, 718, 863, 991
MmeI	TCCRAC	3 cut(s)	80, 330, 471
MnlI	CCTC	3 cut(s)	103, 432, 1029
MseI	TTAA	1 cut(s)	1066
MslI	CAYNNNNRTG	3 cut(s)	173, 531, 733
MspA1I	CMGCKG	2 cut(s)	118, 341
MspI	CCGG	6 cut(s)	122, 227, 236, 244, 263, 300
MspR9I	CCNGG	3 cut(s)	227, 236, 459
Mva1269I	GAATGC	1 cut(s)	547
MvaI	CCWGG	1 cut(s)	459
MvnI	CGCG	2 cut(s)	618, 852
MwoI	GCNNNNNNNGC	4 cut(s)	156, 231, 305, 649
NciI	CCSGG	2 cut(s)	227, 236
NdeI	CATATG	1 cut(s)	565
NdeII	GATC	5 cut(s)	64, 363, 376, 499, 551
NlaIV	GGNNCC	3 cut(s)	378, 740, 960
NmuCI	GTSAC	1 cut(s)	907
NspI	RCATGY	3 cut(s)	191, 789, 820
NspV	TTCGAA	1 cut(s)	696
PciI	ACATGT	2 cut(s)	187, 816
PcsI	WCGNNNNNNNCGW	1 cut(s)	801
PctI	GAATGC	1 cut(s)	547
PfeI	GAWTC	1 cut(s)	494
PkrI	GCNGC	5 cut(s)	120, 152, 291, 294, 879
PmaCI	CACGTG	2 cut(s)	435, 774
PmlI	CACGTG	2 cut(s)	435, 774
Ppu21I	YACGTR	2 cut(s)	435, 774
PscI	ACATGT	2 cut(s)	187, 816
PshAI	GACNNNNGTC	1 cut(s)	341
Psp6I	CCWGG	1 cut(s)	457
PspCI	CACGTG	2 cut(s)	435, 774
PspFI	CCCAGC	1 cut(s)	73
PspGI	CCWGG	1 cut(s)	457
PspN4I	GGNNCC	3 cut(s)	378, 740, 960
PspPI	GGNCC	2 cut(s)	390, 739
PsuI	RGATCY	1 cut(s)	376
PvuII	CAGCTG	1 cut(s)	118
RsaI	GTAC	4 cut(s)	676, 747, 815, 1028
RsaNI	GTAC	4 cut(s)	675, 746, 814, 1027
RseI	CAYNNNNRTG	3 cut(s)	173, 531, 733
SaqAI	TTAA	1 cut(s)	1066
SatI	GCNGC	5 cut(s)	119, 151, 290, 293, 878
Sau3AI	GATC	5 cut(s)	64, 363, 376, 499, 551
Sau96I	GGNCC	2 cut(s)	390, 739
ScaI	AGTACT	1 cut(s)	1028
ScrFI	CCNGG	3 cut(s)	227, 236, 459
SduI	GDGCHC	3 cut(s)	227, 469, 963
SfaNI	GCATC	2 cut(s)	92, 473
SfuI	TTCGAA	1 cut(s)	696
SinI	GGWCC	2 cut(s)	390, 739
SmiMI	CAYNNNNRTG	3 cut(s)	173, 531, 733
Sse9I	AATT	6 cut(s)	48, 400, 633, 718, 863, 991
SsiI	CCGC	7 cut(s)	150, 290, 293, 341, 518, 828, 852
SspMI	CTAG	2 cut(s)	764, 1010
StyD4I	CCNGG	3 cut(s)	225, 234, 457
StyI	CCWWGG	1 cut(s)	779
TaiI	ACGT	3 cut(s)	437, 573, 776
TaqI	TCGA	2 cut(s)	398, 696
TasI	AATT	6 cut(s)	48, 400, 633, 718, 863, 991
TatI	WGTACW	4 cut(s)	674, 745, 813, 1026
TauI	GCSGC	3 cut(s)	153, 292, 295
TfiI	GAWTC	1 cut(s)	494
Tru1I	TTAA	1 cut(s)	1066
Tru9I	TTAA	1 cut(s)	1066
TseFI	GTSAC	1 cut(s)	907
TseI	GCWGC	2 cut(s)	118, 877
Tsp45I	GTSAC	1 cut(s)	907
TspDTI	ATGAA	2 cut(s)	119, 582
TspGWI	ACGGA	2 cut(s)	394, 810
VpaK11BI	GGWCC	2 cut(s)	390, 739
XapI	RAATTY	2 cut(s)	400, 863
XceI	RCATGY	3 cut(s)	191, 789, 820
XcmI	CCANNNNNNNNNTGG	1 cut(s)	662
XspI	CTAG	2 cut(s)	764, 1010
ZrmI	AGTACT	1 cut(s)	1028

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.