Rmu_ssc0000042.1_g000016
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000042.1
OG0021615
Physical Location & Seq
Forward (+)
77673 .. 88762
11090 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000042.1_g000016.1.cds

Sequence Viewer

Length: 1263 bp
atgtcttttctcgttattgacatgaatgacgttccccaattgtatgaaaatctgacgacagcctcacaggagtggggttgcttcagggtaattaaccacaacatcctaactgaactaatggccgagatgaagagtgtagttgcatctcttcttgatctccccatggagattgagaagaagaacgtcggaccagtcgctgggactgaagatgttaaacctagtctgtggacacatggcacgcttaaatcggagttcgtatgtgaaggttatgatcagaaaactaaagctattgttcatggtaagtttgctataaaaggaggagttactgtggacgaggtactgacccatcgctctacgaggatccttatgcttgggtgccacgttagctgtatattggccacctcgaatttcagggtgaaattcggggcaagtcctgtcagaaccaaatatgcaggacatttgtacgtaaagagccacatgtatggtttcagcgtggtgttattggagatgttgactagacaacgagccctcgacaacaaactggctggtgagtataatttggtgaaatgggcgaggccttctcttcttaagaaaaaagagctgaagaagatgatggacccaaatcctggagatcaatactctataaaagccgaagccttgaccgccatgggcgtgccgcaagactccttggcggaccctcctaagagcagcaagagccaacgggttagcttaggcgacatacgcattctcagggtctcagccaccttcgcctctctgaaattcccaagcgagcctgaatggccggacaacctggaggagctccgagtacttactcgccgtcctccacagcccagaaagcctagtcactcatcttctgaaacgacgacgtcgactgggtccgaaccgatggccgtgaattccaccaatgcagacttgcatataattattactactatgactcttcataactacataagaaaatatgctcaacgagatcttgattttggtgaaagtggaaattactcaagtgaagagactactgaagagatggaggacaatgaacatgaagatatgactcttcataactacataagaagatatgctcaacgagatcttgattttgatgaaagtggaaattactcaagtgaagagactactgaagagatggaggacaatgaacatgaaggagatggtccgggaagacaagaaatgaaggtgttaagaaatacaattgcacaaagtctaatgaatgcatatacttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

420

Amino Acids

47.38

Weight (kDa)

5.62

Isoelectric Point (pI)

48.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021615)

Species Orthologous Gene IDs
rosa_multiflora Rmu_ssc0000042.1_g000016
rosa_roxburghii Rroxscaffold_4G00321590 Rroxscaffold_4G00322540
rosa_samantha Rh1CG083400 Rh5DG501500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 890
AccB1I GGYRCC 1 cut(s) 375
AccB7I CCANNNNNTGG 2 cut(s) 197, 626
AccI GTMKAC 1 cut(s) 890
AciI CCGC 3 cut(s) 663, 677, 692
AclWI GGATC 2 cut(s) 355, 368
AcoI YGGCCR 4 cut(s) 120, 396, 800, 909
AcsI RAATTY 4 cut(s) 406, 419, 779, 916
AcuI CTGAAG 5 cut(s) 67, 225, 623, 1062, 1179
AcyI GRCGYC 1 cut(s) 887
AfaI GTAC 3 cut(s) 339, 464, 828
AfiI CCNNNNNNNGG 2 cut(s) 197, 626
AflII CTTAAG 1 cut(s) 587
AflIII ACRYGT 1 cut(s) 477
AjnI CCWGG 2 cut(s) 625, 810
AleI CACNNNNGTG 1 cut(s) 70
AluBI AGCT 5 cut(s) 287, 387, 601, 729, 820
AluI AGCT 5 cut(s) 287, 387, 601, 729, 820
Alw21I GWGCWC 1 cut(s) 822
Alw26I GTCTC 3 cut(s) 760, 1028, 1145
AlwI GGATC 2 cut(s) 355, 368
AlwNI CAGNNNCTG 1 cut(s) 197
AoxI GGCC 5 cut(s) 120, 396, 575, 800, 909
ApeKI GCWGC 1 cut(s) 708
ApoI RAATTY 4 cut(s) 406, 419, 779, 916
AspS9I GGNCC 5 cut(s) 188, 616, 694, 897, 1193
AsuC2I CCSGG 1 cut(s) 1197
AsuHPI GGTGA 4 cut(s) 427, 560, 574, 1019
AvaII GGWCC 5 cut(s) 188, 616, 694, 897, 1193
BalI TGGCCA 1 cut(s) 398
BamHI GGATCC 1 cut(s) 360
BanI GGYRCC 1 cut(s) 375
BanII GRGCYC 2 cut(s) 529, 822
BbsI GAAGAC 1 cut(s) 1207
Bbv12I GWGCWC 1 cut(s) 822
BbvI GCAGC 1 cut(s) 720
BccI CCATC 6 cut(s) 354, 607, 901, 1042, 1159, 1184
BceAI ACGGC 2 cut(s) 822, 896
BciT130I CCWGG 2 cut(s) 627, 812
BclI TGATCA 1 cut(s) 271
BcnI CCSGG 1 cut(s) 1197
BcoDI GTCTC 3 cut(s) 760, 1028, 1145
BfaI CTAG 3 cut(s) 219, 516, 861
BfrI CTTAAG 1 cut(s) 587
BglI GCCNNNNNGGC 1 cut(s) 799
BglII AGATCT 2 cut(s) 994, 1111
BisI GCNGC 2 cut(s) 677, 709
BlsI GCNGC 2 cut(s) 678, 710
BmcAI AGTACT 1 cut(s) 828
Bme1390I CCNGG 3 cut(s) 627, 812, 1197
Bme18I GGWCC 5 cut(s) 188, 616, 694, 897, 1193
BmgT120I GGNCC 5 cut(s) 188, 616, 694, 897, 1193
BmiI GGNNCC 5 cut(s) 362, 377, 618, 696, 898
BmrFI CCNGG 3 cut(s) 627, 812, 1197
BmrI ACTGGG 1 cut(s) 903
BmsI GCATC 1 cut(s) 152
BmuI ACTGGG 1 cut(s) 903
BpiI GAAGAC 1 cut(s) 1207
BplI GAGNNNNNCTC 2 cut(s) 565, 597
BpmI CTGGAG 2 cut(s) 648, 833
Bpu10I CCTNAGC 1 cut(s) 730
BpuEI CTTGAG 2 cut(s) 1009, 1126
BpuMI CCSGG 1 cut(s) 1197
BsaAI YACGTR 1 cut(s) 466
BsaHI GRCGYC 1 cut(s) 887
BsaI GGTCTC 1 cut(s) 760
BsaJI CCNNGG 3 cut(s) 162, 666, 687
BsaXI ACNNNNNCTCC 2 cut(s) 312, 342
Bsc4I CCNNNNNNNGG 2 cut(s) 197, 626
Bse1I ACTGG 3 cut(s) 191, 546, 898
BseBI CCWGG 2 cut(s) 627, 812
BseDI CCNNGG 3 cut(s) 162, 666, 687
BseGI GGATG 1 cut(s) 102
BseLI CCNNNNNNNGG 2 cut(s) 197, 626
BseMII CTCAG 2 cut(s) 763, 771
BseNI ACTGG 3 cut(s) 191, 546, 898
BseRI GAGGAG 2 cut(s) 333, 830
BseXI GCAGC 1 cut(s) 720
BseYI CCCAGC 1 cut(s) 197
BshFI GGCC 5 cut(s) 122, 398, 577, 802, 911
BshNI GGYRCC 1 cut(s) 375
BsiHKAI GWGCWC 1 cut(s) 822
BsiSI CCGG 2 cut(s) 803, 1196
BslFI GGGAC 1 cut(s) 214
BslI CCNNNNNNNGG 2 cut(s) 197, 626
BsmAI GTCTC 3 cut(s) 760, 1028, 1145
BsmFI GGGAC 1 cut(s) 214
BsmI GAATGC 2 cut(s) 744, 1255
BsnI GGCC 5 cut(s) 122, 398, 577, 802, 911
Bso31I GGTCTC 1 cut(s) 760
Bsp1286I GDGCHC 2 cut(s) 529, 822
Bsp143I GATC 6 cut(s) 154, 271, 360, 631, 994, 1111
Bsp19I CCATGG 2 cut(s) 162, 666
BspACI CCGC 3 cut(s) 663, 677, 692
BspANI GGCC 5 cut(s) 122, 398, 577, 802, 911
BspCNI CTCAG 2 cut(s) 762, 770
BspLI GGNNCC 5 cut(s) 362, 377, 618, 696, 898
BspPI GGATC 2 cut(s) 355, 368
BspT107I GGYRCC 1 cut(s) 375
BspTI CTTAAG 1 cut(s) 587
BspTNI GGTCTC 1 cut(s) 760
BsrI ACTGG 3 cut(s) 191, 546, 898
BssECI CCNNGG 3 cut(s) 162, 666, 687
BssMI GATC 6 cut(s) 154, 271, 360, 631, 994, 1111
BssNI GRCGYC 1 cut(s) 887
BssT1I CCWWGG 3 cut(s) 162, 666, 687
Bst2UI CCWGG 2 cut(s) 627, 812
Bst4CI ACNGT 1 cut(s) 328
Bst6I CTCTTC 9 cut(s) 125, 153, 588, 966, 1026, 1038, 1083, 1143, 1155
BstACI GRCGYC 1 cut(s) 887
BstAFI CTTAAG 1 cut(s) 587
BstBAI YACGTR 1 cut(s) 466
BstC8I GCNNGC 3 cut(s) 239, 674, 791
BstDEI CTNAG 5 cut(s) 702, 730, 749, 757, 1260
BstDSI CCRYGG 2 cut(s) 162, 666
BstF5I GGATG 1 cut(s) 102
BstKTI GATC 6 cut(s) 157, 274, 363, 634, 997, 1114
BstMAI GTCTC 3 cut(s) 760, 1028, 1145
BstMBI GATC 6 cut(s) 154, 271, 360, 631, 994, 1111
BstMWI GCNNNNNNNGC 7 cut(s) 384, 662, 714, 741, 767, 799, 856
BstNI CCWGG 2 cut(s) 627, 812
BstNSI RCATGY 1 cut(s) 481
BstSCI CCNGG 3 cut(s) 625, 810, 1195
BstSNI TACGTA 1 cut(s) 466
BstV1I GCAGC 1 cut(s) 720
BstV2I GAAGAC 1 cut(s) 1207
BstX2I RGATCY 3 cut(s) 360, 994, 1111
BstXI CCANNNNNNTGG 1 cut(s) 482
BstYI RGATCY 3 cut(s) 360, 994, 1111
BsuRI GGCC 5 cut(s) 122, 398, 577, 802, 911
BtgI CCRYGG 2 cut(s) 162, 666
BtgZI GCGATG 1 cut(s) 332
BtsCI GGATG 1 cut(s) 102
Cac8I GCNNGC 3 cut(s) 239, 674, 791
CaiI CAGNNNCTG 1 cut(s) 197
Cfr13I GGNCC 5 cut(s) 188, 616, 694, 897, 1193
Csp6I GTAC 3 cut(s) 338, 463, 827
CviAII CATG 8 cut(s) 22, 163, 233, 296, 478, 667, 1064, 1181
CviQI GTAC 3 cut(s) 338, 463, 827
DdeI CTNAG 5 cut(s) 702, 730, 749, 757, 1260
DpnI GATC 6 cut(s) 156, 273, 362, 633, 996, 1113
DpnII GATC 6 cut(s) 154, 271, 360, 631, 994, 1111
EaeI YGGCCR 4 cut(s) 120, 396, 800, 909
Eam1104I CTCTTC 9 cut(s) 125, 153, 588, 966, 1026, 1038, 1083, 1143, 1155
EarI CTCTTC 9 cut(s) 125, 153, 588, 966, 1026, 1038, 1083, 1143, 1155
EciI GGCGGA 1 cut(s) 707
Ecl136II GAGCTC 1 cut(s) 820
Eco105I TACGTA 1 cut(s) 466
Eco130I CCWWGG 3 cut(s) 162, 666, 687
Eco147I AGGCCT 1 cut(s) 577
Eco24I GRGCYC 2 cut(s) 529, 822
Eco31I GGTCTC 1 cut(s) 760
Eco47I GGWCC 5 cut(s) 188, 616, 694, 897, 1193
Eco53kI GAGCTC 1 cut(s) 820
Eco57I CTGAAG 5 cut(s) 67, 225, 623, 1062, 1179
EcoICRI GAGCTC 1 cut(s) 820
EcoRI GAATTC 1 cut(s) 916
EcoRII CCWGG 2 cut(s) 625, 810
EcoT14I CCWWGG 3 cut(s) 162, 666, 687
EcoT22I ATGCAT 1 cut(s) 1255
EcoT38I GRGCYC 2 cut(s) 529, 822
ErhI CCWWGG 3 cut(s) 162, 666, 687
FaeI CATG 8 cut(s) 25, 166, 236, 299, 481, 670, 1067, 1184
FaqI GGGAC 1 cut(s) 214
FatI CATG 8 cut(s) 21, 162, 232, 295, 477, 666, 1063, 1180
FbaI TGATCA 1 cut(s) 271
FblI GTMKAC 1 cut(s) 890
Fnu4HI GCNGC 2 cut(s) 677, 709
FokI GGATG 1 cut(s) 89
FriOI GRGCYC 2 cut(s) 529, 822
Fsp4HI GCNGC 2 cut(s) 677, 709
FspBI CTAG 3 cut(s) 219, 516, 861
GluI GCNGC 2 cut(s) 677, 709
GsaI CCCAGC 1 cut(s) 201
GsuI CTGGAG 2 cut(s) 648, 833
HaeIII GGCC 5 cut(s) 122, 398, 577, 802, 911
HapII CCGG 2 cut(s) 803, 1196
Hin1I GRCGYC 1 cut(s) 887
Hin1II CATG 8 cut(s) 25, 166, 236, 299, 481, 670, 1067, 1184
HincII GTYRAC 2 cut(s) 513, 891
HindII GTYRAC 2 cut(s) 513, 891
HinfI GANTC 3 cut(s) 683, 958, 1075
HpaII CCGG 2 cut(s) 803, 1196
HphI GGTGA 4 cut(s) 427, 560, 574, 1019
Hpy166II GTNNAC 4 cut(s) 228, 331, 513, 891
Hpy188I TCNGA 9 cut(s) 54, 188, 250, 276, 440, 777, 824, 877, 901
Hpy188III TCNNGA 3 cut(s) 152, 998, 1115
Hpy8I GTNNAC 4 cut(s) 228, 331, 513, 891
Hpy99I CGWCG 4 cut(s) 188, 886, 889, 892
HpyAV CCTTC 5 cut(s) 257, 588, 775, 1178, 1207
HpyCH4III ACNGT 1 cut(s) 328
HpyCH4IV ACGT 5 cut(s) 30, 183, 381, 465, 887
HpyCH4V TGCA 6 cut(s) 143, 452, 929, 937, 1235, 1253
HpyF10VI GCNNNNNNNGC 7 cut(s) 384, 662, 714, 741, 767, 799, 856
HpyF3I CTNAG 5 cut(s) 702, 730, 749, 757, 1260
HpySE526I ACGT 5 cut(s) 30, 183, 381, 465, 887
Hsp92I GRCGYC 1 cut(s) 887
Hsp92II CATG 8 cut(s) 25, 166, 236, 299, 481, 670, 1067, 1184
Ksp22I TGATCA 1 cut(s) 271
Kzo9I GATC 6 cut(s) 154, 271, 360, 631, 994, 1111
LmnI GCTCC 2 cut(s) 817, 825
Lsp1109I GCAGC 1 cut(s) 720
LweI GCATC 1 cut(s) 152
MaeI CTAG 3 cut(s) 219, 516, 861
MaeII ACGT 5 cut(s) 30, 183, 381, 465, 887
MaeIII GTNAC 2 cut(s) 322, 863
MalI GATC 6 cut(s) 156, 273, 362, 633, 996, 1113
MboI GATC 6 cut(s) 154, 271, 360, 631, 994, 1111
MfeI CAATTG 2 cut(s) 38, 1230
MflI RGATCY 3 cut(s) 360, 994, 1111
MhlI GDGCHC 2 cut(s) 529, 822
MlsI TGGCCA 1 cut(s) 398
MluNI TGGCCA 1 cut(s) 398
MlyI GAGTC 3 cut(s) 677, 952, 1069
MmeI TCCRAC 1 cut(s) 166
Mox20I TGGCCA 1 cut(s) 398
Mph1103I ATGCAT 1 cut(s) 1255
MscI TGGCCA 1 cut(s) 398
MseI TTAA 5 cut(s) 93, 213, 243, 588, 1220
MslI CAYNNNNRTG 3 cut(s) 70, 480, 671
Msp20I TGGCCA 1 cut(s) 398
MspCI CTTAAG 1 cut(s) 587
MspI CCGG 2 cut(s) 803, 1196
MspR9I CCNGG 3 cut(s) 627, 812, 1197
MunI CAATTG 2 cut(s) 38, 1230
Mva1269I GAATGC 2 cut(s) 744, 1255
MvaI CCWGG 2 cut(s) 627, 812
MwoI GCNNNNNNNGC 7 cut(s) 384, 662, 714, 741, 767, 799, 856
NciI CCSGG 1 cut(s) 1197
NcoI CCATGG 2 cut(s) 162, 666
NdeII GATC 6 cut(s) 154, 271, 360, 631, 994, 1111
NlaIII CATG 8 cut(s) 25, 166, 236, 299, 481, 670, 1067, 1184
NlaIV GGNNCC 5 cut(s) 362, 377, 618, 696, 898
NmeAIII GCCGAG 1 cut(s) 148
NmuCI GTSAC 1 cut(s) 863
NsiI ATGCAT 1 cut(s) 1255
NspI RCATGY 1 cut(s) 481
OliI CACNNNNGTG 1 cut(s) 70
PceI AGGCCT 1 cut(s) 577
PciI ACATGT 1 cut(s) 477
PcsI WCGNNNNNNNCGW 1 cut(s) 887
PctI GAATGC 2 cut(s) 744, 1255
PflFI GACNNNGTC 2 cut(s) 886, 895
PflMI CCANNNNNTGG 2 cut(s) 197, 626
PfoI TCCNGGA 2 cut(s) 625, 1195
PkrI GCNGC 2 cut(s) 678, 710
PleI GAGTC 3 cut(s) 677, 952, 1069
PpsI GAGTC 3 cut(s) 677, 952, 1069
Ppu21I YACGTR 1 cut(s) 466
PscI ACATGT 1 cut(s) 477
Psp124BI GAGCTC 1 cut(s) 822
Psp6I CCWGG 2 cut(s) 625, 810
PspFI CCCAGC 1 cut(s) 197
PspGI CCWGG 2 cut(s) 625, 810
PspN4I GGNNCC 5 cut(s) 362, 377, 618, 696, 898
PspPI GGNCC 5 cut(s) 188, 616, 694, 897, 1193
PstNI CAGNNNCTG 1 cut(s) 197
PsuI RGATCY 3 cut(s) 360, 994, 1111
PsyI GACNNNGTC 2 cut(s) 886, 895
RsaI GTAC 3 cut(s) 339, 464, 828
RsaNI GTAC 3 cut(s) 338, 463, 827
RseI CAYNNNNRTG 3 cut(s) 70, 480, 671
SacI GAGCTC 1 cut(s) 822
SalI GTCGAC 1 cut(s) 889
SaqAI TTAA 5 cut(s) 93, 213, 243, 588, 1220
SatI GCNGC 2 cut(s) 677, 709
Sau3AI GATC 6 cut(s) 154, 271, 360, 631, 994, 1111
Sau96I GGNCC 5 cut(s) 188, 616, 694, 897, 1193
ScaI AGTACT 1 cut(s) 828
SchI GAGTC 3 cut(s) 677, 952, 1069
ScrFI CCNGG 3 cut(s) 627, 812, 1197
SduI GDGCHC 2 cut(s) 529, 822
SfaNI GCATC 1 cut(s) 152
SinI GGWCC 5 cut(s) 188, 616, 694, 897, 1193
SmiMI CAYNNNNRTG 3 cut(s) 70, 480, 671
SmlI CTYRAG 3 cut(s) 587, 1024, 1141
SmoI CTYRAG 3 cut(s) 587, 1024, 1141
SnaBI TACGTA 1 cut(s) 466
SseBI AGGCCT 1 cut(s) 577
SsiI CCGC 3 cut(s) 663, 677, 692
SspMI CTAG 3 cut(s) 219, 516, 861
SstI GAGCTC 1 cut(s) 822
StuI AGGCCT 1 cut(s) 577
StyD4I CCNGG 3 cut(s) 625, 810, 1195
StyI CCWWGG 3 cut(s) 162, 666, 687
TaaI ACNGT 1 cut(s) 328
TaiI ACGT 5 cut(s) 33, 186, 384, 468, 890
TaqI TCGA 3 cut(s) 404, 531, 890
TatI WGTACW 1 cut(s) 826
TauI GCSGC 1 cut(s) 679
Tru1I TTAA 5 cut(s) 93, 213, 243, 588, 1220
Tru9I TTAA 5 cut(s) 93, 213, 243, 588, 1220
TseFI GTSAC 1 cut(s) 863
TseI GCWGC 1 cut(s) 708
Tsp45I GTSAC 1 cut(s) 863
Tth111I GACNNNGTC 2 cut(s) 886, 895
Van91I CCANNNNNTGG 2 cut(s) 197, 626
Vha464I CTTAAG 1 cut(s) 587
VpaK11BI GGWCC 5 cut(s) 188, 616, 694, 897, 1193
XapI RAATTY 4 cut(s) 406, 419, 779, 916
XceI RCATGY 1 cut(s) 481
XmiI GTMKAC 1 cut(s) 890
XspI CTAG 3 cut(s) 219, 516, 861
ZraI GACGTC 1 cut(s) 888
ZrmI AGTACT 1 cut(s) 828
Zsp2I ATGCAT 1 cut(s) 1255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.