Rh1CG083400
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0021615
Physical Location & Seq
Reverse (-)
17391276 .. 17415276
24001 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG083400.1

Sequence Viewer

Length: 519 bp
ATGATCGACGTCCCGGGAGCACTGAGTTCACCCAAGCAAATTCTTGATGGCTTCCCCGGATGCCTCCCTGGACATCCTCTCGGTGCCTCATCACAAACCTCACCCGCCGGCTCTATCCTCCACCTCACACTGCCTCTAAATGAGAAGCTACTCGATCGGTACACCCGGAATGACTTCGGGCCTCGCTACCTTCCTCACCTCCCGGCGGTCAATCCGACGGAGCCAGCATCCCGGGCCCTAGCATACCGGCAAGTCTCCCTTCCCCGGGAACTCGGTGACTCGCATCCCAACACAGCCCTCACAGTACCCACAGCTCTCCGACAACGAGCCCTCGACAACAAACTAGCTGGTGAGCATAATTTGGTGAAGTGGGCGAGGCCATCTCTTCTTAAGAAAAAAGAGTTGAAGATGATGAAGGACCCAAAGCCTGGAGATCAATACTCTATTATAGGTGCATACCAAGCAGCTAAGCTTATTTACACGTGTTTAGAATCCTATCTAAAGATAGGCCATCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

172

Amino Acids

18.84

Weight (kDa)

9.49

Isoelectric Point (pI)

39.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021615)

Species Orthologous Gene IDs
rosa_multiflora Rmu_ssc0000042.1_g000016
rosa_roxburghii Rroxscaffold_4G00321590 Rroxscaffold_4G00322540
rosa_samantha Rh1CG083400 Rh5DG501500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 12
AccB1I GGYRCC 1 cut(s) 83
AccB7I CCANNNNNTGG 1 cut(s) 428
AciI CCGC 2 cut(s) 105, 206
AcsI RAATTY 1 cut(s) 39
AcvI CACGTG 1 cut(s) 483
AcyI GRCGYC 1 cut(s) 9
AfaI GTAC 2 cut(s) 161, 306
AfiI CCNNNNNNNGG 4 cut(s) 205, 264, 265, 428
AflII CTTAAG 1 cut(s) 389
AflIII ACRYGT 2 cut(s) 480, 482
AgsI TTSAA 1 cut(s) 406
AjnI CCWGG 2 cut(s) 67, 427
AluBI AGCT 5 cut(s) 148, 314, 347, 467, 472
AluI AGCT 5 cut(s) 148, 314, 347, 467, 472
Alw21I GWGCWC 1 cut(s) 22
Alw26I GTCTC 1 cut(s) 259
Ama87I CYCGRG 3 cut(s) 13, 231, 264
AoxI GGCC 4 cut(s) 179, 234, 377, 508
ApaI GGGCCC 1 cut(s) 238
ApeKI GCWGC 1 cut(s) 464
ApoI RAATTY 1 cut(s) 39
Asp700I GAANNNNTTC 1 cut(s) 173
AspS9I GGNCC 4 cut(s) 179, 234, 235, 418
AsuC2I CCSGG 9 cut(s) 14, 15, 57, 166, 203, 232, 233, 265, 266
AsuHPI GGTGA 6 cut(s) 21, 93, 188, 287, 362, 376
AvaI CYCGRG 3 cut(s) 13, 231, 264
AvaII GGWCC 1 cut(s) 418
BaeGI GKGCMC 1 cut(s) 238
BanI GGYRCC 1 cut(s) 83
BanII GRGCYC 2 cut(s) 238, 331
BbrPI CACGTG 1 cut(s) 483
Bbv12I GWGCWC 1 cut(s) 22
BbvI GCAGC 1 cut(s) 476
BccI CCATC 2 cut(s) 41, 388
BciT130I CCWGG 2 cut(s) 69, 429
BcnI CCSGG 9 cut(s) 14, 15, 57, 166, 203, 232, 233, 265, 266
BcoDI GTCTC 1 cut(s) 259
BfaI CTAG 2 cut(s) 239, 344
BfrI CTTAAG 1 cut(s) 389
BisI GCNGC 1 cut(s) 465
BlpI GCTNAGC 1 cut(s) 468
BlsI GCNGC 1 cut(s) 466
Bme18I GGWCC 1 cut(s) 418
BmeT110I CYCGRG 3 cut(s) 13, 231, 264
BmgT120I GGNCC 4 cut(s) 179, 234, 235, 418
BmiI GGNNCC 4 cut(s) 85, 222, 236, 420
BmsI GCATC 3 cut(s) 50, 236, 292
BplI GAGNNNNNCTC 2 cut(s) 367, 399
BpmI CTGGAG 1 cut(s) 450
Bpu1102I GCTNAGC 1 cut(s) 468
BpuMI CCSGG 9 cut(s) 14, 15, 57, 166, 203, 232, 233, 265, 266
BsaAI YACGTR 1 cut(s) 483
BsaHI GRCGYC 1 cut(s) 9
BsaJI CCNNGG 6 cut(s) 13, 55, 67, 231, 263, 264
Bsc4I CCNNNNNNNGG 4 cut(s) 205, 264, 265, 428
Bse118I RCCGGY 2 cut(s) 107, 246
BseBI CCWGG 2 cut(s) 69, 429
BseDI CCNNGG 6 cut(s) 13, 55, 67, 231, 263, 264
BseGI GGATG 5 cut(s) 65, 73, 227, 283, 511
BseLI CCNNNNNNNGG 4 cut(s) 205, 264, 265, 428
BseMII CTCAG 1 cut(s) 14
BseSI GKGCMC 1 cut(s) 238
BseXI GCAGC 1 cut(s) 476
Bsh1285I CGRYCG 1 cut(s) 157
BshFI GGCC 4 cut(s) 181, 236, 379, 510
BshNI GGYRCC 1 cut(s) 83
BsiEI CGRYCG 1 cut(s) 157
BsiHKAI GWGCWC 1 cut(s) 22
BsiHKCI CYCGRG 3 cut(s) 13, 231, 264
BsiSI CCGG 8 cut(s) 14, 57, 108, 166, 203, 232, 247, 265
BslI CCNNNNNNNGG 4 cut(s) 205, 264, 265, 428
BsmAI GTCTC 1 cut(s) 259
BsnI GGCC 4 cut(s) 181, 236, 379, 510
BsoBI CYCGRG 3 cut(s) 13, 231, 264
Bsp120I GGGCCC 1 cut(s) 234
Bsp1286I GDGCHC 3 cut(s) 22, 238, 331
Bsp143I GATC 3 cut(s) 3, 154, 433
Bsp1720I GCTNAGC 1 cut(s) 468
BspACI CCGC 2 cut(s) 105, 206
BspANI GGCC 4 cut(s) 181, 236, 379, 510
BspCNI CTCAG 1 cut(s) 15
BspLI GGNNCC 4 cut(s) 85, 222, 236, 420
BspT107I GGYRCC 1 cut(s) 83
BspTI CTTAAG 1 cut(s) 389
BsrFI RCCGGY 2 cut(s) 107, 246
BssAI RCCGGY 2 cut(s) 107, 246
BssECI CCNNGG 6 cut(s) 13, 55, 67, 231, 263, 264
BssMI GATC 3 cut(s) 3, 154, 433
BssNI GRCGYC 1 cut(s) 9
Bst2UI CCWGG 2 cut(s) 69, 429
Bst4CI ACNGT 1 cut(s) 304
Bst6I CTCTTC 1 cut(s) 390
BstACI GRCGYC 1 cut(s) 9
BstAFI CTTAAG 1 cut(s) 389
BstBAI YACGTR 1 cut(s) 483
BstC8I GCNNGC 2 cut(s) 109, 225
BstDEI CTNAG 2 cut(s) 23, 468
BstF5I GGATG 5 cut(s) 65, 73, 227, 283, 511
BstKTI GATC 3 cut(s) 6, 157, 436
BstMAI GTCTC 1 cut(s) 259
BstMBI GATC 3 cut(s) 3, 154, 433
BstMCI CGRYCG 1 cut(s) 157
BstMWI GCNNNNNNNGC 2 cut(s) 233, 461
BstNI CCWGG 2 cut(s) 69, 429
BstSLI GKGCMC 1 cut(s) 238
BstV1I GCAGC 1 cut(s) 476
BsuRI GGCC 4 cut(s) 181, 236, 379, 510
BtsCI GGATG 5 cut(s) 65, 73, 227, 283, 511
BtsI GCAGTG 1 cut(s) 128
BtsIMutI CAGTG 2 cut(s) 20, 128
Cac8I GCNNGC 2 cut(s) 109, 225
Cfr10I RCCGGY 2 cut(s) 107, 246
Cfr13I GGNCC 4 cut(s) 179, 234, 235, 418
Cfr9I CCCGGG 3 cut(s) 13, 231, 264
Csp6I GTAC 2 cut(s) 160, 305
CviAII CATG 1 cut(s) 516
CviQI GTAC 2 cut(s) 160, 305
DdeI CTNAG 2 cut(s) 23, 468
DpnI GATC 3 cut(s) 5, 156, 435
DpnII GATC 3 cut(s) 3, 154, 433
Eam1104I CTCTTC 1 cut(s) 390
EarI CTCTTC 1 cut(s) 390
Eco24I GRGCYC 2 cut(s) 238, 331
Eco47I GGWCC 1 cut(s) 418
Eco72I CACGTG 1 cut(s) 483
Eco88I CYCGRG 3 cut(s) 13, 231, 264
EcoO109I RGGNCCY 2 cut(s) 235, 418
EcoRII CCWGG 2 cut(s) 67, 427
EcoT38I GRGCYC 2 cut(s) 238, 331
FaeI CATG 1 cut(s) 519
FaiI YATR 5 cut(s) 244, 357, 449, 457, 517
FalI AAGNNNNNCTT 2 cut(s) 243, 275
FatI CATG 1 cut(s) 515
FauI CCCGC 1 cut(s) 112
Fnu4HI GCNGC 1 cut(s) 465
FokI GGATG 5 cut(s) 60, 72, 214, 270, 498
FriOI GRGCYC 2 cut(s) 238, 331
Fsp4HI GCNGC 1 cut(s) 465
FspBI CTAG 2 cut(s) 239, 344
GluI GCNGC 1 cut(s) 465
GsuI CTGGAG 1 cut(s) 450
HaeIII GGCC 4 cut(s) 181, 236, 379, 510
HapII CCGG 8 cut(s) 14, 57, 108, 166, 203, 232, 247, 265
Hin1I GRCGYC 1 cut(s) 9
Hin1II CATG 1 cut(s) 519
HindIII AAGCTT 1 cut(s) 470
HinfI GANTC 2 cut(s) 278, 491
HpaII CCGG 8 cut(s) 14, 57, 108, 166, 203, 232, 247, 265
HphI GGTGA 6 cut(s) 21, 93, 188, 287, 362, 376
Hpy166II GTNNAC 2 cut(s) 29, 162
Hpy188I TCNGA 2 cut(s) 216, 320
Hpy188III TCNNGA 1 cut(s) 44
Hpy8I GTNNAC 2 cut(s) 29, 162
Hpy99I CGWCG 2 cut(s) 11, 220
HpyAV CCTTC 3 cut(s) 200, 269, 409
HpyCH4III ACNGT 1 cut(s) 304
HpyCH4IV ACGT 2 cut(s) 9, 482
HpyCH4V TGCA 1 cut(s) 455
HpyF10VI GCNNNNNNNGC 2 cut(s) 233, 461
HpyF3I CTNAG 2 cut(s) 23, 468
HpySE526I ACGT 2 cut(s) 9, 482
Hsp92I GRCGYC 1 cut(s) 9
Hsp92II CATG 1 cut(s) 519
KroI GCCGGC 1 cut(s) 107
KroNI GCCGGC 1 cut(s) 109
Kzo9I GATC 3 cut(s) 3, 154, 433
LmnI GCTCC 2 cut(s) 17, 220
Lsp1109I GCAGC 1 cut(s) 476
LweI GCATC 3 cut(s) 50, 236, 292
MaeI CTAG 2 cut(s) 239, 344
MaeII ACGT 2 cut(s) 9, 482
MaeIII GTNAC 1 cut(s) 275
MalI GATC 3 cut(s) 5, 156, 435
MboI GATC 3 cut(s) 3, 154, 433
MboII GAAGA 2 cut(s) 377, 418
MhlI GDGCHC 3 cut(s) 22, 238, 331
MluCI AATT 2 cut(s) 39, 358
MlyI GAGTC 1 cut(s) 272
MmeI TCCRAC 2 cut(s) 239, 343
MroNI GCCGGC 1 cut(s) 107
MroXI GAANNNNTTC 1 cut(s) 173
MseI TTAA 1 cut(s) 390
MspCI CTTAAG 1 cut(s) 389
MspI CCGG 8 cut(s) 14, 57, 108, 166, 203, 232, 247, 265
MvaI CCWGG 2 cut(s) 69, 429
MwoI GCNNNNNNNGC 2 cut(s) 233, 461
NaeI GCCGGC 1 cut(s) 109
NciI CCSGG 9 cut(s) 14, 15, 57, 166, 203, 232, 233, 265, 266
NdeII GATC 3 cut(s) 3, 154, 433
NgoMIV GCCGGC 1 cut(s) 107
NlaIII CATG 1 cut(s) 519
NlaIV GGNNCC 4 cut(s) 85, 222, 236, 420
NmuCI GTSAC 1 cut(s) 275
PdiI GCCGGC 1 cut(s) 109
PdmI GAANNNNTTC 1 cut(s) 173
PfeI GAWTC 1 cut(s) 491
PflMI CCANNNNNTGG 1 cut(s) 428
PkrI GCNGC 1 cut(s) 466
Ple19I CGATCG 1 cut(s) 157
PleI GAGTC 1 cut(s) 272
PmaCI CACGTG 1 cut(s) 483
PmlI CACGTG 1 cut(s) 483
PpsI GAGTC 1 cut(s) 272
Ppu21I YACGTR 1 cut(s) 483
PpuMI RGGWCCY 1 cut(s) 418
Psp5II RGGWCCY 1 cut(s) 418
Psp6I CCWGG 2 cut(s) 67, 427
PspCI CACGTG 1 cut(s) 483
PspGI CCWGG 2 cut(s) 67, 427
PspN4I GGNNCC 4 cut(s) 85, 222, 236, 420
PspOMI GGGCCC 1 cut(s) 234
PspPI GGNCC 4 cut(s) 179, 234, 235, 418
PspPPI RGGWCCY 1 cut(s) 418
PvuI CGATCG 1 cut(s) 157
RsaI GTAC 2 cut(s) 161, 306
RsaNI GTAC 2 cut(s) 160, 305
SaqAI TTAA 1 cut(s) 390
SatI GCNGC 1 cut(s) 465
Sau3AI GATC 3 cut(s) 3, 154, 433
Sau96I GGNCC 4 cut(s) 179, 234, 235, 418
SchI GAGTC 1 cut(s) 272
SduI GDGCHC 3 cut(s) 22, 238, 331
SfaNI GCATC 3 cut(s) 50, 236, 292
SinI GGWCC 1 cut(s) 418
SmaI CCCGGG 3 cut(s) 15, 233, 266
SmlI CTYRAG 1 cut(s) 389
SmoI CTYRAG 1 cut(s) 389
Sse9I AATT 2 cut(s) 39, 358
SsiI CCGC 2 cut(s) 105, 206
SspMI CTAG 2 cut(s) 239, 344
TaaI ACNGT 1 cut(s) 304
TaiI ACGT 2 cut(s) 12, 485
TaqI TCGA 3 cut(s) 6, 153, 333
TasI AATT 2 cut(s) 39, 358
TfiI GAWTC 1 cut(s) 491
Tru1I TTAA 1 cut(s) 390
Tru9I TTAA 1 cut(s) 390
TscAI CASTG 2 cut(s) 27, 135
TseFI GTSAC 1 cut(s) 275
TseI GCWGC 1 cut(s) 464
Tsp45I GTSAC 1 cut(s) 275
TspDTI ATGAA 1 cut(s) 428
TspGWI ACGGA 1 cut(s) 233
TspMI CCCGGG 3 cut(s) 13, 231, 264
TspRI CASTG 2 cut(s) 27, 135
Van91I CCANNNNNTGG 1 cut(s) 428
Vha464I CTTAAG 1 cut(s) 389
VpaK11BI GGWCC 1 cut(s) 418
XapI RAATTY 1 cut(s) 39
XmaI CCCGGG 3 cut(s) 13, 231, 264
XmnI GAANNNNTTC 1 cut(s) 173
XspI CTAG 2 cut(s) 239, 344
ZraI GACGTC 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.