Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0021615

Physical Location & Seq

Genomic Coordinates Reverse (-)

51240557 .. 51242163

Gene Structure 1607 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00321590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGTCTCTTCCCGTTATTGACATGAATGAATTTCCCCAAATGTATGAATCTCTCGAGGACAGCCTCACGGGCATGGGATTGCTTCGTGTAATCAACCATAACATCCTAACTGAACTAATGGCCGAGATGATGAGTGTGGTTGCATCATTTCTTGATCTCCCCATGGAGTTTAAGAAGAAGAACGTCGAGACCGTCGTTGGGACTGGTTTTATATTCCTACCGAGATCAATCCTCTCGTATCAAACATTGGGGTTTACGACTTTGGCTCTTCTAAAGCCGCCTTCTCTTCCCAAGAAAAAAGAGCTGAAGAAGATGATGGACCCAACGCTTGGAGATCAATACTCTACAAATGATGCATACCAAGCAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009056 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009850 GO:0009852 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0042447 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

123

Amino Acids

13.81

Weight (kDa)

5.07

Isoelectric Point (pI)

46.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	3 - 62	5.7e-09	non-haem dioxygenase in morphine synthesis N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0021615)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_ssc0000042.1_g000016
rosa_roxburghii	Rroxscaffold_4G00321590 Rroxscaffold_4G00322540
rosa_samantha	Rh1CG083400 Rh5DG501500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	329
AciI	CCGC	1 cut(s)	278
AcoI	YGGCCR	1 cut(s)	120
AcsI	RAATTY	1 cut(s)	29
AcuI	CTGAAG	1 cut(s)	326
AfiI	CCNNNNNNNGG	2 cut(s)	198, 329
AluBI	AGCT	2 cut(s)	304, 368
AluI	AGCT	2 cut(s)	304, 368
Alw26I	GTCTC	2 cut(s)	9, 182
Ama87I	CYCGRG	1 cut(s)	53
AoxI	GGCC	1 cut(s)	120
ApeKI	GCWGC	1 cut(s)	365
ApoI	RAATTY	1 cut(s)	29
AspS9I	GGNCC	1 cut(s)	319
AvaI	CYCGRG	1 cut(s)	53
AvaII	GGWCC	1 cut(s)	319
BccI	CCATC	1 cut(s)	310
BcoDI	GTCTC	2 cut(s)	9, 182
BglI	GCCNNNNNGGC	1 cut(s)	69
BisI	GCNGC	2 cut(s)	278, 366
BlsI	GCNGC	2 cut(s)	279, 367
Bme18I	GGWCC	1 cut(s)	319
BmeT110I	CYCGRG	1 cut(s)	53
BmgT120I	GGNCC	1 cut(s)	319
BmiI	GGNNCC	1 cut(s)	321
BmsI	GCATC	2 cut(s)	152, 343
BsaI	GGTCTC	1 cut(s)	182
BsaJI	CCNNGG	1 cut(s)	162
Bsc4I	CCNNNNNNNGG	2 cut(s)	198, 329
Bse1I	ACTGG	1 cut(s)	208
BseDI	CCNNGG	1 cut(s)	162
BseGI	GGATG	1 cut(s)	102
BseLI	CCNNNNNNNGG	2 cut(s)	198, 329
BseNI	ACTGG	1 cut(s)	208
BshFI	GGCC	1 cut(s)	122
BsiHKCI	CYCGRG	1 cut(s)	53
BslFI	GGGAC	1 cut(s)	214
BslI	CCNNNNNNNGG	2 cut(s)	198, 329
BsmAI	GTCTC	2 cut(s)	9, 182
BsmFI	GGGAC	1 cut(s)	214
BsnI	GGCC	1 cut(s)	122
Bso31I	GGTCTC	1 cut(s)	182
BsoBI	CYCGRG	1 cut(s)	53
Bsp143I	GATC	3 cut(s)	154, 224, 334
Bsp19I	CCATGG	1 cut(s)	162
BspACI	CCGC	1 cut(s)	278
BspANI	GGCC	1 cut(s)	122
BspLI	GGNNCC	1 cut(s)	321
BspQI	GCTCTTC	1 cut(s)	273
BspTNI	GGTCTC	1 cut(s)	182
BsrI	ACTGG	1 cut(s)	208
BssECI	CCNNGG	1 cut(s)	162
BssMI	GATC	3 cut(s)	154, 224, 334
BssT1I	CCWWGG	1 cut(s)	162
Bst4CI	ACNGT	1 cut(s)	193
Bst6I	CTCTTC	3 cut(s)	12, 273, 291
BstDEI	CTNAG	1 cut(s)	369
BstDSI	CCRYGG	1 cut(s)	162
BstF5I	GGATG	1 cut(s)	102
BstKTI	GATC	3 cut(s)	157, 227, 337
BstMAI	GTCTC	2 cut(s)	9, 182
BstMBI	GATC	3 cut(s)	154, 224, 334
BstMWI	GCNNNNNNNGC	2 cut(s)	69, 362
BsuRI	GGCC	1 cut(s)	122
BtgI	CCRYGG	1 cut(s)	162
BtsCI	GGATG	1 cut(s)	102
Cfr13I	GGNCC	1 cut(s)	319
CviAII	CATG	3 cut(s)	22, 73, 163
CviJI	RGCY	6 cut(s)	63, 122, 266, 277, 304, 368
CviKI_1	RGCY	6 cut(s)	63, 122, 266, 277, 304, 368
DdeI	CTNAG	1 cut(s)	369
DpnI	GATC	3 cut(s)	156, 226, 336
DpnII	GATC	3 cut(s)	154, 224, 334
EaeI	YGGCCR	1 cut(s)	120
Eam1104I	CTCTTC	3 cut(s)	12, 273, 291
EarI	CTCTTC	3 cut(s)	12, 273, 291
Eco130I	CCWWGG	1 cut(s)	162
Eco31I	GGTCTC	1 cut(s)	182
Eco47I	GGWCC	1 cut(s)	319
Eco57I	CTGAAG	1 cut(s)	326
Eco88I	CYCGRG	1 cut(s)	53
EcoT14I	CCWWGG	1 cut(s)	162
EcoT22I	ATGCAT	1 cut(s)	358
ErhI	CCWWGG	1 cut(s)	162
FaeI	CATG	3 cut(s)	25, 76, 166
FaiI	YATR	7 cut(s)	23, 45, 74, 99, 164, 212, 358
FaqI	GGGAC	1 cut(s)	214
FatI	CATG	3 cut(s)	21, 72, 162
Fnu4HI	GCNGC	2 cut(s)	278, 366
FokI	GGATG	1 cut(s)	89
Fsp4HI	GCNGC	2 cut(s)	278, 366
GluI	GCNGC	2 cut(s)	278, 366
HaeIII	GGCC	1 cut(s)	122
Hin1II	CATG	3 cut(s)	25, 76, 166
HinfI	GANTC	1 cut(s)	47
Hpy166II	GTNNAC	1 cut(s)	255
Hpy188III	TCNNGA	3 cut(s)	53, 152, 187
Hpy8I	GTNNAC	1 cut(s)	255
Hpy99I	CGWCG	2 cut(s)	188, 197
HpyAV	CCTTC	1 cut(s)	291
HpyCH4III	ACNGT	1 cut(s)	193
HpyCH4IV	ACGT	1 cut(s)	183
HpyCH4V	TGCA	2 cut(s)	143, 356
HpyF10VI	GCNNNNNNNGC	2 cut(s)	69, 362
HpyF3I	CTNAG	1 cut(s)	369
HpySE526I	ACGT	1 cut(s)	183
Hsp92II	CATG	3 cut(s)	25, 76, 166
Kzo9I	GATC	3 cut(s)	154, 224, 334
LguI	GCTCTTC	1 cut(s)	273
LpnPI	CCDG	1 cut(s)	189
LweI	GCATC	2 cut(s)	152, 343
MaeII	ACGT	1 cut(s)	183
MalI	GATC	3 cut(s)	156, 226, 336
MboI	GATC	3 cut(s)	154, 224, 334
MboII	GAAGA	6 cut(s)	187, 190, 260, 278, 319, 322
MluCI	AATT	1 cut(s)	29
MnlI	CCTC	3 cut(s)	49, 74, 242
Mph1103I	ATGCAT	1 cut(s)	358
MseI	TTAA	1 cut(s)	171
MslI	CAYNNNNRTG	1 cut(s)	71
MwoI	GCNNNNNNNGC	2 cut(s)	69, 362
NcoI	CCATGG	1 cut(s)	162
NdeII	GATC	3 cut(s)	154, 224, 334
NlaIII	CATG	3 cut(s)	25, 76, 166
NlaIV	GGNNCC	1 cut(s)	321
NmeAIII	GCCGAG	1 cut(s)	148
NsiI	ATGCAT	1 cut(s)	358
PaeR7I	CTCGAG	1 cut(s)	53
PciSI	GCTCTTC	1 cut(s)	273
PcsI	WCGNNNNNNNCGW	2 cut(s)	189, 192
PfeI	GAWTC	1 cut(s)	47
PflMI	CCANNNNNTGG	1 cut(s)	329
PkrI	GCNGC	2 cut(s)	279, 367
PspN4I	GGNNCC	1 cut(s)	321
PspPI	GGNCC	1 cut(s)	319
RseI	CAYNNNNRTG	1 cut(s)	71
SapI	GCTCTTC	1 cut(s)	273
SaqAI	TTAA	1 cut(s)	171
SatI	GCNGC	2 cut(s)	278, 366
Sau3AI	GATC	3 cut(s)	154, 224, 334
Sau96I	GGNCC	1 cut(s)	319
SetI	ASST	3 cut(s)	186, 306, 370
SfaNI	GCATC	2 cut(s)	152, 343
Sfr274I	CTCGAG	1 cut(s)	53
SinI	GGWCC	1 cut(s)	319
SlaI	CTCGAG	1 cut(s)	53
SmiMI	CAYNNNNRTG	1 cut(s)	71
SmlI	CTYRAG	1 cut(s)	53
SmoI	CTYRAG	1 cut(s)	53
Sse9I	AATT	1 cut(s)	29
SsiI	CCGC	1 cut(s)	278
StyI	CCWWGG	1 cut(s)	162
TaaI	ACNGT	1 cut(s)	193
TaiI	ACGT	1 cut(s)	186
TaqI	TCGA	2 cut(s)	54, 186
TasI	AATT	1 cut(s)	29
TauI	GCSGC	1 cut(s)	280
TfiI	GAWTC	1 cut(s)	47
Tru1I	TTAA	1 cut(s)	171
Tru9I	TTAA	1 cut(s)	171
TseI	GCWGC	1 cut(s)	365
TspDTI	ATGAA	3 cut(s)	38, 42, 60
Van91I	CCANNNNNTGG	1 cut(s)	329
VpaK11BI	GGWCC	1 cut(s)	319
XapI	RAATTY	1 cut(s)	29
XhoI	CTCGAG	1 cut(s)	53
Zsp2I	ATGCAT	1 cut(s)	358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.