Rroxscaffold_4G00322540
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0021615
Physical Location & Seq
Forward (+)
52845351 .. 52855516
10166 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00322540.1

Sequence Viewer

Length: 639 bp
ATGAATGACTTTCCCCAAATGTATGAAAATCTGAGGACAGCCTCACAGGAGTGGGGTTGCTTCACAGTAATTATCCACAACATCCTAACTGAACTAATGGCCAAGATGAAGAGTGTGGTTGCTTCTCTTCTTGATCTCCCCATGGAGATTGAGAAGAAGAACGTCGGACCAGTCACCGGGACTGGTTTTATACCCCTTACTAAGATCAACCTTCTATATCAAAAATTGAGTCTTATATCCATTCTAAATGAAGATTACCATCGTAAAAGTCCATTTTTAGGGGTGACTCGCCGAATTTTTGGTAGAGTTATTCCACGGGCCACCTTGAATTTCATGGTGAAATTCGGGGCAAGTCCTATCGTAACCAAATATGCAGGACATTTGTACGTAAAGAGCCAAATGTATGGTTTCAACATGGTGTTATTGGAGATGTTTACTAGACAACGAGCCCTCAACAACAAACTGGCTGGTGAGCATAATTTGGTGAAGTGGGTGGGGCCTTCTCTTCTTAAGAAAAAAGAGCTAAAGAAGATGATGGACCCAAAGCCTGGAGATCAATACTCTATAAAAGGTGCATACCAAGCAGCTAAGCTTATTTACAAGTGCTTAGAATCCCATCTAAAGATAGGCCATCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

212

Amino Acids

24.19

Weight (kDa)

9.81

Isoelectric Point (pI)

34.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 6 - 53 2.5e-07 non-haem dioxygenase in morphine synthesis N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021615)

Species Orthologous Gene IDs
rosa_multiflora Rmu_ssc0000042.1_g000016
rosa_roxburghii Rroxscaffold_4G00321590 Rroxscaffold_4G00322540
rosa_samantha Rh1CG083400 Rh5DG501500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 548
AcoI YGGCCR 1 cut(s) 99
AcsI RAATTY 3 cut(s) 294, 328, 341
AfaI GTAC 1 cut(s) 386
AfiI CCNNNNNNNGG 3 cut(s) 176, 278, 548
AflII CTTAAG 1 cut(s) 509
AgsI TTSAA 2 cut(s) 328, 412
AjnI CCWGG 1 cut(s) 547
AleI CACNNNNGTG 1 cut(s) 49
AluBI AGCT 3 cut(s) 523, 587, 592
AluI AGCT 3 cut(s) 523, 587, 592
AoxI GGCC 4 cut(s) 99, 318, 497, 628
ApeKI GCWGC 1 cut(s) 584
ApoI RAATTY 3 cut(s) 294, 328, 341
ArsI GACNNNNNNTTYG 2 cut(s) 214, 246
AspS9I GGNCC 4 cut(s) 167, 318, 497, 538
AsuC2I CCSGG 1 cut(s) 178
AsuHPI GGTGA 5 cut(s) 166, 295, 349, 482, 496
AvaII GGWCC 2 cut(s) 167, 538
BalI TGGCCA 1 cut(s) 101
BanII GRGCYC 1 cut(s) 451
BbvI GCAGC 1 cut(s) 596
BccI CCATC 3 cut(s) 267, 529, 624
BciT130I CCWGG 1 cut(s) 549
BcnI CCSGG 1 cut(s) 178
BfaI CTAG 1 cut(s) 438
BfrI CTTAAG 1 cut(s) 509
BisI GCNGC 1 cut(s) 585
BlpI GCTNAGC 1 cut(s) 588
BlsI GCNGC 1 cut(s) 586
Bme1390I CCNGG 2 cut(s) 178, 549
Bme18I GGWCC 2 cut(s) 167, 538
BmgT120I GGNCC 4 cut(s) 167, 318, 497, 538
BmiI GGNNCC 2 cut(s) 498, 540
BmrFI CCNGG 2 cut(s) 178, 549
BpmI CTGGAG 1 cut(s) 570
Bpu1102I GCTNAGC 1 cut(s) 588
BpuMI CCSGG 1 cut(s) 178
BsaAI YACGTR 1 cut(s) 388
BsaBI GATNNNNATC 1 cut(s) 258
BsaJI CCNNGG 2 cut(s) 141, 314
Bsc4I CCNNNNNNNGG 3 cut(s) 176, 278, 548
Bse1I ACTGG 3 cut(s) 170, 187, 468
Bse8I GATNNNNATC 1 cut(s) 258
BseBI CCWGG 1 cut(s) 549
BseDI CCNNGG 2 cut(s) 141, 314
BseGI GGATG 1 cut(s) 81
BseJI GATNNNNATC 1 cut(s) 258
BseLI CCNNNNNNNGG 3 cut(s) 176, 278, 548
BseMII CTCAG 1 cut(s) 23
BseNI ACTGG 3 cut(s) 170, 187, 468
BseXI GCAGC 1 cut(s) 596
BshFI GGCC 4 cut(s) 101, 320, 499, 630
BsiSI CCGG 1 cut(s) 177
BslFI GGGAC 1 cut(s) 193
BslI CCNNNNNNNGG 3 cut(s) 176, 278, 548
BsmFI GGGAC 1 cut(s) 193
BsnI GGCC 4 cut(s) 101, 320, 499, 630
Bsp1286I GDGCHC 1 cut(s) 451
Bsp143I GATC 3 cut(s) 133, 204, 553
Bsp1720I GCTNAGC 1 cut(s) 588
Bsp19I CCATGG 1 cut(s) 141
BspANI GGCC 4 cut(s) 101, 320, 499, 630
BspCNI CTCAG 1 cut(s) 24
BspLI GGNNCC 2 cut(s) 498, 540
BspTI CTTAAG 1 cut(s) 509
BsrI ACTGG 3 cut(s) 170, 187, 468
BssECI CCNNGG 2 cut(s) 141, 314
BssMI GATC 3 cut(s) 133, 204, 553
BssT1I CCWWGG 1 cut(s) 141
Bst2UI CCWGG 1 cut(s) 549
Bst4CI ACNGT 1 cut(s) 67
Bst6I CTCTTC 3 cut(s) 104, 132, 510
BstAFI CTTAAG 1 cut(s) 509
BstBAI YACGTR 1 cut(s) 388
BstDEI CTNAG 4 cut(s) 32, 201, 588, 607
BstDSI CCRYGG 2 cut(s) 141, 314
BstF5I GGATG 1 cut(s) 81
BstKTI GATC 3 cut(s) 136, 207, 556
BstMBI GATC 3 cut(s) 133, 204, 553
BstMWI GCNNNNNNNGC 1 cut(s) 581
BstNI CCWGG 1 cut(s) 549
BstSCI CCNGG 2 cut(s) 176, 547
BstSNI TACGTA 1 cut(s) 388
BstV1I GCAGC 1 cut(s) 596
BstXI CCANNNNNNTGG 1 cut(s) 404
BsuRI GGCC 4 cut(s) 101, 320, 499, 630
BtgI CCRYGG 2 cut(s) 141, 314
BtsCI GGATG 1 cut(s) 81
Cfr13I GGNCC 4 cut(s) 167, 318, 497, 538
Csp6I GTAC 1 cut(s) 385
CviAII CATG 3 cut(s) 142, 334, 415
CviQI GTAC 1 cut(s) 385
DdeI CTNAG 4 cut(s) 32, 201, 588, 607
DpnI GATC 3 cut(s) 135, 206, 555
DpnII GATC 3 cut(s) 133, 204, 553
EaeI YGGCCR 1 cut(s) 99
Eam1104I CTCTTC 3 cut(s) 104, 132, 510
EarI CTCTTC 3 cut(s) 104, 132, 510
Eco105I TACGTA 1 cut(s) 388
Eco130I CCWWGG 1 cut(s) 141
Eco24I GRGCYC 1 cut(s) 451
Eco47I GGWCC 2 cut(s) 167, 538
EcoO109I RGGNCCY 1 cut(s) 497
EcoRII CCWGG 1 cut(s) 547
EcoT14I CCWWGG 1 cut(s) 141
EcoT38I GRGCYC 1 cut(s) 451
ErhI CCWWGG 1 cut(s) 141
FaeI CATG 3 cut(s) 145, 337, 418
FaqI GGGAC 1 cut(s) 193
FatI CATG 3 cut(s) 141, 333, 414
Fnu4HI GCNGC 1 cut(s) 585
FokI GGATG 1 cut(s) 68
FriOI GRGCYC 1 cut(s) 451
Fsp4HI GCNGC 1 cut(s) 585
FspBI CTAG 1 cut(s) 438
GluI GCNGC 1 cut(s) 585
GsuI CTGGAG 1 cut(s) 570
HaeIII GGCC 4 cut(s) 101, 320, 499, 630
HapII CCGG 1 cut(s) 177
Hin1II CATG 3 cut(s) 145, 337, 418
HindIII AAGCTT 1 cut(s) 590
HinfI GANTC 3 cut(s) 229, 286, 611
HpaII CCGG 1 cut(s) 177
HphI GGTGA 5 cut(s) 166, 295, 349, 482, 496
Hpy166II GTNNAC 1 cut(s) 435
Hpy188I TCNGA 2 cut(s) 33, 167
Hpy188III TCNNGA 1 cut(s) 131
Hpy8I GTNNAC 1 cut(s) 435
Hpy99I CGWCG 1 cut(s) 167
HpyAV CCTTC 2 cut(s) 221, 510
HpyCH4III ACNGT 1 cut(s) 67
HpyCH4IV ACGT 2 cut(s) 162, 387
HpyCH4V TGCA 2 cut(s) 374, 575
HpyF10VI GCNNNNNNNGC 1 cut(s) 581
HpyF3I CTNAG 4 cut(s) 32, 201, 588, 607
HpySE526I ACGT 2 cut(s) 162, 387
Hsp92II CATG 3 cut(s) 145, 337, 418
Kzo9I GATC 3 cut(s) 133, 204, 553
LpnPI CCDG 9 cut(s) 32, 168, 183, 190, 360, 449, 453, 534, 561
Lsp1109I GCAGC 1 cut(s) 596
MaeI CTAG 1 cut(s) 438
MaeII ACGT 2 cut(s) 162, 387
MaeIII GTNAC 3 cut(s) 172, 283, 361
MalI GATC 3 cut(s) 135, 206, 555
MboI GATC 3 cut(s) 133, 204, 553
MboII GAAGA 7 cut(s) 119, 121, 166, 169, 263, 497, 541
MhlI GDGCHC 1 cut(s) 451
MlsI TGGCCA 1 cut(s) 101
MluCI AATT 6 cut(s) 69, 224, 294, 328, 341, 478
MluNI TGGCCA 1 cut(s) 101
MlyI GAGTC 2 cut(s) 238, 280
MmeI TCCRAC 1 cut(s) 145
MnlI CCTC 3 cut(s) 27, 52, 461
Mox20I TGGCCA 1 cut(s) 101
MscI TGGCCA 1 cut(s) 101
MseI TTAA 1 cut(s) 510
MslI CAYNNNNRTG 1 cut(s) 49
Msp20I TGGCCA 1 cut(s) 101
MspCI CTTAAG 1 cut(s) 509
MspI CCGG 1 cut(s) 177
MspR9I CCNGG 2 cut(s) 178, 549
MvaI CCWGG 1 cut(s) 549
MwoI GCNNNNNNNGC 1 cut(s) 581
NciI CCSGG 1 cut(s) 178
NcoI CCATGG 1 cut(s) 141
NdeII GATC 3 cut(s) 133, 204, 553
NlaIII CATG 3 cut(s) 145, 337, 418
NlaIV GGNNCC 2 cut(s) 498, 540
NmuCI GTSAC 2 cut(s) 172, 283
OliI CACNNNNGTG 1 cut(s) 49
PfeI GAWTC 1 cut(s) 611
PflMI CCANNNNNTGG 1 cut(s) 548
PkrI GCNGC 1 cut(s) 586
PleI GAGTC 2 cut(s) 237, 280
PpsI GAGTC 2 cut(s) 237, 280
Ppu21I YACGTR 1 cut(s) 388
Psp6I CCWGG 1 cut(s) 547
PspGI CCWGG 1 cut(s) 547
PspN4I GGNNCC 2 cut(s) 498, 540
PspPI GGNCC 4 cut(s) 167, 318, 497, 538
RsaI GTAC 1 cut(s) 386
RsaNI GTAC 1 cut(s) 385
RseI CAYNNNNRTG 1 cut(s) 49
SaqAI TTAA 1 cut(s) 510
SatI GCNGC 1 cut(s) 585
Sau3AI GATC 3 cut(s) 133, 204, 553
Sau96I GGNCC 4 cut(s) 167, 318, 497, 538
SchI GAGTC 2 cut(s) 238, 280
ScrFI CCNGG 2 cut(s) 178, 549
SduI GDGCHC 1 cut(s) 451
SetI ASST 8 cut(s) 165, 213, 326, 390, 525, 574, 589, 594
SinI GGWCC 2 cut(s) 167, 538
SmiMI CAYNNNNRTG 1 cut(s) 49
SmlI CTYRAG 1 cut(s) 509
SmoI CTYRAG 1 cut(s) 509
SnaBI TACGTA 1 cut(s) 388
Sse9I AATT 6 cut(s) 69, 224, 294, 328, 341, 478
SspMI CTAG 1 cut(s) 438
StyD4I CCNGG 2 cut(s) 176, 547
StyI CCWWGG 1 cut(s) 141
TaaI ACNGT 1 cut(s) 67
TaiI ACGT 2 cut(s) 165, 390
TasI AATT 6 cut(s) 69, 224, 294, 328, 341, 478
TfiI GAWTC 1 cut(s) 611
Tru1I TTAA 1 cut(s) 510
Tru9I TTAA 1 cut(s) 510
TseFI GTSAC 2 cut(s) 172, 283
TseI GCWGC 1 cut(s) 584
Tsp45I GTSAC 2 cut(s) 172, 283
TspDTI ATGAA 5 cut(s) 17, 39, 122, 264, 322
Van91I CCANNNNNTGG 1 cut(s) 548
Vha464I CTTAAG 1 cut(s) 509
VpaK11BI GGWCC 2 cut(s) 167, 538
XapI RAATTY 3 cut(s) 294, 328, 341
XspI CTAG 1 cut(s) 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.