Rmu_ssc0000077.1_g000001

Photosystem I reaction center subunit N

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000077.1
OG0014548
Physical Location & Seq
Forward (+)
134 .. 730
597 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 435 bp
atgaactctagcgttttggcaagtaactatgccatctctggcggcagtgcagtactggctgaagccaatggcaagatgacctccatgcctcagagagtagccatgcctgtaattagggcccaacatcaagagtcgcaaagcgttggaggaagaagagctgcactgctcttcctcaccgccactgccgctgctgttgcctccaactccattgccaatgccagcgtctttgacgactacctggagaagagcaaggccaacaaggaactcaatgacaggaagaggcttgcaacaagtggagcaaactttgcaagagcattcactgttcaatttgggacctgcaaattccctgagaacttcactggctgccaagatcttgccaagcaaaatgtatttactacttccaactcattccctgaaggtgccatttctctctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0019904
KEGG Pathways
Metabolic & Signaling
ko00195 ko01100 map00195 map01100
Pfam Domains
Protein Families
PsaN

Protein Analysis

144

Amino Acids

15.23

Weight (kDa)

9.34

Isoelectric Point (pI)

41.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsaN PF05479 38 - 129 1.4e-39 Photosystem I reaction centre subunit N (PSAN or PSI-N)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014548)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G64040 AT5G64040
fragaria_vesca FvH4_1g24360
malus_domestica MD01G1004300.v1.1 MD15G1441800.v1.1
prunus_persica Prupe.4G271200_v2.0.a1
pyrus_communis pycom01g02140
rosa_chinensis RchiOBHm_Chr2g0120891
rosa_laevigata RLG00000018599
rosa_multiflora Rmu_ssc0000077.1_g000001
rosa_roxburghii Rroxscaffold_2G00122760
rosa_rugosa Rorug02G0232500
rosa_samantha Rh2AG288900 Rh2BG299900 Rh2CG277900 Rh2DG314100
rosa_wichuraiana Rw2G023140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 344
AccB1I GGYRCC 1 cut(s) 419
AciI CCGC 3 cut(s) 42, 177, 186
AcsI RAATTY 1 cut(s) 341
AcuI CTGAAG 2 cut(s) 81, 435
AfaI GTAC 1 cut(s) 54
AgsI TTSAA 1 cut(s) 326
AjnI CCWGG 1 cut(s) 237
AluBI AGCT 1 cut(s) 158
AluI AGCT 1 cut(s) 158
AoxI GGCC 2 cut(s) 117, 252
ApaI GGGCCC 1 cut(s) 121
ApeKI GCWGC 3 cut(s) 158, 188, 363
ApoI RAATTY 1 cut(s) 341
AspS9I GGNCC 3 cut(s) 117, 118, 333
AsuHPI GGTGA 1 cut(s) 166
AvaII GGWCC 1 cut(s) 333
BaeGI GKGCMC 1 cut(s) 121
BanI GGYRCC 1 cut(s) 419
BanII GRGCYC 1 cut(s) 121
BbvI GCAGC 3 cut(s) 145, 175, 350
BccI CCATC 1 cut(s) 41
BciT130I CCWGG 1 cut(s) 239
BfaI CTAG 1 cut(s) 9
BfuAI ACCTGC 1 cut(s) 344
BglII AGATCT 1 cut(s) 370
BisI GCNGC 5 cut(s) 43, 159, 186, 189, 364
BlsI GCNGC 5 cut(s) 44, 160, 187, 190, 365
BmcAI AGTACT 1 cut(s) 54
Bme1390I CCNGG 1 cut(s) 239
Bme18I GGWCC 1 cut(s) 333
BmgT120I GGNCC 3 cut(s) 117, 118, 333
BmiI GGNNCC 3 cut(s) 119, 334, 421
BmrFI CCNGG 1 cut(s) 239
BpmI CTGGAG 1 cut(s) 260
Bse1I ACTGG 2 cut(s) 60, 364
Bse3DI GCAATG 1 cut(s) 207
BseBI CCWGG 1 cut(s) 239
BseMI GCAATG 1 cut(s) 207
BseMII CTCAG 2 cut(s) 104, 339
BseNI ACTGG 2 cut(s) 60, 364
BseSI GKGCMC 1 cut(s) 121
BseXI GCAGC 3 cut(s) 145, 175, 350
BsgI GTGCAG 2 cut(s) 69, 144
BshFI GGCC 2 cut(s) 119, 254
BshNI GGYRCC 1 cut(s) 419
BslFI GGGAC 1 cut(s) 346
BsmFI GGGAC 1 cut(s) 346
BsmI GAATGC 1 cut(s) 314
BsnI GGCC 2 cut(s) 119, 254
Bsp120I GGGCCC 1 cut(s) 117
Bsp1286I GDGCHC 1 cut(s) 121
Bsp143I GATC 1 cut(s) 370
BspACI CCGC 3 cut(s) 42, 177, 186
BspANI GGCC 2 cut(s) 119, 254
BspCNI CTCAG 2 cut(s) 103, 340
BspLI GGNNCC 3 cut(s) 119, 334, 421
BspMI ACCTGC 1 cut(s) 344
BspQI GCTCTTC 3 cut(s) 148, 173, 239
BspT107I GGYRCC 1 cut(s) 419
BsrDI GCAATG 1 cut(s) 207
BsrI ACTGG 2 cut(s) 60, 364
BssMI GATC 1 cut(s) 370
Bst2UI CCWGG 1 cut(s) 239
Bst4CI ACNGT 1 cut(s) 322
Bst6I CTCTTC 4 cut(s) 148, 173, 239, 272
BstAPI GCANNNNNTGC 1 cut(s) 305
BstC8I GCNNGC 2 cut(s) 220, 285
BstDEI CTNAG 2 cut(s) 90, 348
BstKTI GATC 1 cut(s) 373
BstMBI GATC 1 cut(s) 370
BstMWI GCNNNNNNNGC 4 cut(s) 56, 185, 194, 305
BstNI CCWGG 1 cut(s) 239
BstSCI CCNGG 1 cut(s) 237
BstSLI GKGCMC 1 cut(s) 121
BstV1I GCAGC 3 cut(s) 145, 175, 350
BstX2I RGATCY 1 cut(s) 370
BstYI RGATCY 1 cut(s) 370
BsuRI GGCC 2 cut(s) 119, 254
BtsI GCAGTG 3 cut(s) 52, 161, 180
BtsIMutI CAGTG 5 cut(s) 52, 161, 180, 318, 357
BveI ACCTGC 1 cut(s) 344
Cac8I GCNNGC 2 cut(s) 220, 285
Cfr13I GGNCC 3 cut(s) 117, 118, 333
CseI GACGC 1 cut(s) 211
Csp6I GTAC 1 cut(s) 53
CviAII CATG 2 cut(s) 85, 103
CviJI RGCY 8 cut(s) 59, 65, 101, 119, 158, 254, 283, 363
CviKI_1 RGCY 8 cut(s) 59, 65, 101, 119, 158, 254, 283, 363
CviQI GTAC 1 cut(s) 53
DdeI CTNAG 2 cut(s) 90, 348
DpnI GATC 1 cut(s) 372
DpnII GATC 1 cut(s) 370
Eam1104I CTCTTC 4 cut(s) 148, 173, 239, 272
EarI CTCTTC 4 cut(s) 148, 173, 239, 272
Eco24I GRGCYC 1 cut(s) 121
Eco47I GGWCC 1 cut(s) 333
Eco57I CTGAAG 2 cut(s) 81, 435
EcoO109I RGGNCCY 2 cut(s) 117, 333
EcoRII CCWGG 1 cut(s) 237
EcoT38I GRGCYC 1 cut(s) 121
FaeI CATG 2 cut(s) 88, 106
FaiI YATR 3 cut(s) 30, 86, 104
FaqI GGGAC 1 cut(s) 346
FatI CATG 2 cut(s) 84, 102
Fnu4HI GCNGC 5 cut(s) 43, 159, 186, 189, 364
FriOI GRGCYC 1 cut(s) 121
Fsp4HI GCNGC 5 cut(s) 43, 159, 186, 189, 364
FspBI CTAG 1 cut(s) 9
GluI GCNGC 5 cut(s) 43, 159, 186, 189, 364
GsuI CTGGAG 1 cut(s) 260
HaeIII GGCC 2 cut(s) 119, 254
HgaI GACGC 1 cut(s) 211
Hin1II CATG 2 cut(s) 88, 106
HinfI GANTC 1 cut(s) 131
HphI GGTGA 1 cut(s) 166
Hpy188I TCNGA 2 cut(s) 93, 434
Hpy188III TCNNGA 1 cut(s) 128
HpyAV CCTTC 1 cut(s) 410
HpyCH4III ACNGT 1 cut(s) 322
HpyCH4V TGCA 5 cut(s) 50, 161, 287, 308, 339
HpyF10VI GCNNNNNNNGC 4 cut(s) 56, 185, 194, 305
HpyF3I CTNAG 2 cut(s) 90, 348
Hsp92II CATG 2 cut(s) 88, 106
Kzo9I GATC 1 cut(s) 370
LguI GCTCTTC 3 cut(s) 148, 173, 239
LmnI GCTCC 1 cut(s) 296
Lsp1109I GCAGC 3 cut(s) 145, 175, 350
MaeI CTAG 1 cut(s) 9
MaeIII GTNAC 1 cut(s) 23
MalI GATC 1 cut(s) 372
MboI GATC 1 cut(s) 370
MboII GAAGA 5 cut(s) 160, 162, 165, 256, 289
MflI RGATCY 1 cut(s) 370
MhlI GDGCHC 1 cut(s) 121
MluCI AATT 3 cut(s) 111, 326, 341
MlyI GAGTC 1 cut(s) 140
MmeI TCCRAC 3 cut(s) 124, 225, 426
MnlI CCTC 6 cut(s) 91, 99, 140, 182, 208, 273
MspA1I CMGCKG 1 cut(s) 188
MspR9I CCNGG 1 cut(s) 239
Mva1269I GAATGC 1 cut(s) 314
MvaI CCWGG 1 cut(s) 239
MwoI GCNNNNNNNGC 4 cut(s) 56, 185, 194, 305
NdeII GATC 1 cut(s) 370
NlaIII CATG 2 cut(s) 88, 106
NlaIV GGNNCC 3 cut(s) 119, 334, 421
PciSI GCTCTTC 3 cut(s) 148, 173, 239
PctI GAATGC 1 cut(s) 314
PkrI GCNGC 5 cut(s) 44, 160, 187, 190, 365
PleI GAGTC 1 cut(s) 139
PpsI GAGTC 1 cut(s) 139
PpuMI RGGWCCY 1 cut(s) 333
Psp5II RGGWCCY 1 cut(s) 333
Psp6I CCWGG 1 cut(s) 237
PspGI CCWGG 1 cut(s) 237
PspN4I GGNNCC 3 cut(s) 119, 334, 421
PspOMI GGGCCC 1 cut(s) 117
PspPI GGNCC 3 cut(s) 117, 118, 333
PspPPI RGGWCCY 1 cut(s) 333
PsuI RGATCY 1 cut(s) 370
RsaI GTAC 1 cut(s) 54
RsaNI GTAC 1 cut(s) 53
SapI GCTCTTC 3 cut(s) 148, 173, 239
SatI GCNGC 5 cut(s) 43, 159, 186, 189, 364
Sau3AI GATC 1 cut(s) 370
Sau96I GGNCC 3 cut(s) 117, 118, 333
ScaI AGTACT 1 cut(s) 54
SchI GAGTC 1 cut(s) 140
ScrFI CCNGG 1 cut(s) 239
SduI GDGCHC 1 cut(s) 121
SetI ASST 5 cut(s) 83, 160, 240, 338, 421
SinI GGWCC 1 cut(s) 333
Sse9I AATT 3 cut(s) 111, 326, 341
SsiI CCGC 3 cut(s) 42, 177, 186
SspMI CTAG 1 cut(s) 9
StyD4I CCNGG 1 cut(s) 237
TaaI ACNGT 1 cut(s) 322
TasI AATT 3 cut(s) 111, 326, 341
TatI WGTACW 1 cut(s) 52
TauI GCSGC 2 cut(s) 45, 188
TscAI CASTG 5 cut(s) 52, 168, 187, 325, 364
TseI GCWGC 3 cut(s) 158, 188, 363
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 5 cut(s) 52, 168, 187, 325, 364
VpaK11BI GGWCC 1 cut(s) 333
XapI RAATTY 1 cut(s) 341
XspI CTAG 1 cut(s) 9
ZrmI AGTACT 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.