Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000112.1

Orthogroup ID

OG0018478

Physical Location & Seq

Genomic Coordinates Reverse (-)

134501 .. 135112

Gene Structure 612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000112.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

atgggatcgacgttcttctctcgaaccatacgtcgaacgacgaccacggccacggccacggcctatcagcttcctgacgatcagatcgccgaattcaagcatgctttcagccttttggacaaggacggcgacggttccatcactaccaaagagctcggcactgtgatgcgctcactcggtcaaaagccaactgaagaagagctcgaggtgatgattaaagaggtcgacgtagatggaaacggtaggattgatttccaagagttcgttaaccttatggcccggaagatgcaggacactctcacagaggaccagctcaaggaagcgtttcgagttttcgataaggaccagaatggcttcatttctgccgatgagcttcgtcatgttatgacgagcctcggcgagacgctgacggatgagcaggttaatcagatggttcgtgaagctgatatggacggtgatggacaaatcaactataaggagtttgtgaaggtcatgatggccaagaaagtacatagccggagcctcgagcattgtagcagtggttctagtaagggtcacaagccaaagaaactccgttgtagagagcgtgtacgccaatgtttctacctctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 ko04015 ko04016 ko04020 ko04022 ko04024 ko04070 ko04114 ko04218 ko04261 ko04270 ko04371 ko04626 ko04713 ko04720 ko04722 ko04728 ko04740 ko04744 ko04745 ko04750 ko04910 ko04912 ko04915 ko04916 ko04921 ko04922 ko04924 ko04925 ko04970 ko04971 ko05010 ko05031 ko05034 ko05133 ko05152 ko05167 ko05200 ko05214 ko05418 map04014 map04015 map04016 map04020 map04022 map04024 map04070 map04114 map04218 map04261 map04270 map04371 map04626 map04713 map04720 map04722 map04728 map04740 map04744 map04745 map04750 map04910 map04912 map04915 map04916 map04921 map04922 map04924 map04925 map04970 map04971 map05010 map05031 map05034 map05133 map05152 map05167 map05200 map05214 map05418

Pfam Domains

Protein Families

EF-hand_1

Protein Analysis

203

Amino Acids

23.17

Weight (kDa)

5.8

Isoelectric Point (pI)

27.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018478)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g20701
rosa_chinensis	RchiOBHm_Chr1g0364941
rosa_laevigata	RLG00000027457
rosa_multiflora	Rmu_ssc0000112.1_g000025
rosa_roxburghii	Rroxscaffold_4G00291660
rosa_rugosa	Rorug01G0318600
rosa_samantha	Rh1BG288600 Rh1CG305300 Rh1DG320200
rosa_wichuraiana	Rw1G029010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	409
AccI	GTMKAC	1 cut(s)	225
AclWI	GGATC	1 cut(s)	13
AcoI	YGGCCR	3 cut(s)	48, 54, 498
AcsI	RAATTY	1 cut(s)	92
AcuI	CTGAAG	1 cut(s)	213
AfaI	GTAC	2 cut(s)	510, 591
AfiI	CCNNNNNNNGG	1 cut(s)	316
AgsI	TTSAA	1 cut(s)	97
AluBI	AGCT	6 cut(s)	70, 154, 202, 313, 373, 443
AluI	AGCT	6 cut(s)	70, 154, 202, 313, 373, 443
Alw21I	GWGCWC	2 cut(s)	156, 204
Alw26I	GTCTC	1 cut(s)	395
AlwI	GGATC	1 cut(s)	13
Ama87I	CYCGRG	2 cut(s)	203, 524
AoxI	GGCC	5 cut(s)	48, 54, 60, 276, 498
ApoI	RAATTY	1 cut(s)	92
ArsI	GACNNNNNNTTYG	2 cut(s)	16, 48
Asp700I	GAANNNNTTC	2 cut(s)	324, 353
AspLEI	GCGC	1 cut(s)	171
AspS9I	GGNCC	3 cut(s)	277, 307, 343
AsuC2I	CCSGG	1 cut(s)	280
AsuHPI	GGTGA	2 cut(s)	220, 467
AvaI	CYCGRG	2 cut(s)	203, 524
AvaII	GGWCC	2 cut(s)	307, 343
BalI	TGGCCA	1 cut(s)	500
BanII	GRGCYC	2 cut(s)	156, 204
Bbv12I	GWGCWC	2 cut(s)	156, 204
BccI	CCATC	5 cut(s)	146, 227, 424, 452, 490
BceAI	ACGGC	4 cut(s)	63, 69, 75, 142
BcnI	CCSGG	1 cut(s)	280
BcoDI	GTCTC	1 cut(s)	395
BfaI	CTAG	2 cut(s)	546, 610
BfuAI	ACCTGC	1 cut(s)	409
Bme1390I	CCNGG	1 cut(s)	280
Bme18I	GGWCC	2 cut(s)	307, 343
BmeT110I	CYCGRG	2 cut(s)	203, 524
BmgT120I	GGNCC	3 cut(s)	277, 307, 343
BmiI	GGNNCC	2 cut(s)	136, 521
BmrFI	CCNGG	1 cut(s)	280
BmsI	GCATC	2 cut(s)	156, 276
BpuEI	CTTGAG	1 cut(s)	299
BpuMI	CCSGG	1 cut(s)	280
BsaJI	CCNNGG	4 cut(s)	45, 51, 57, 394
Bsc4I	CCNNNNNNNGG	1 cut(s)	316
BseDI	CCNNGG	4 cut(s)	45, 51, 57, 394
BseGI	GGATG	1 cut(s)	418
BseLI	CCNNNNNNNGG	1 cut(s)	316
BshFI	GGCC	5 cut(s)	50, 56, 62, 278, 500
BsiHKAI	GWGCWC	2 cut(s)	156, 204
BsiHKCI	CYCGRG	2 cut(s)	203, 524
BsiSI	CCGG	2 cut(s)	280, 517
BslI	CCNNNNNNNGG	1 cut(s)	316
BsmAI	GTCTC	1 cut(s)	395
BsmBI	CGTCTC	1 cut(s)	395
BsnI	GGCC	5 cut(s)	50, 56, 62, 278, 500
BsoBI	CYCGRG	2 cut(s)	203, 524
Bsp1286I	GDGCHC	2 cut(s)	156, 204
Bsp143I	GATC	3 cut(s)	5, 79, 84
BspANI	GGCC	5 cut(s)	50, 56, 62, 278, 500
BspHI	TCATGA	1 cut(s)	492
BspLI	GGNNCC	2 cut(s)	136, 521
BspMI	ACCTGC	1 cut(s)	409
BspPI	GGATC	1 cut(s)	13
BspQI	GCTCTTC	1 cut(s)	192
BssECI	CCNNGG	4 cut(s)	45, 51, 57, 394
BssMI	GATC	3 cut(s)	5, 79, 84
Bst4CI	ACNGT	4 cut(s)	134, 163, 242, 455
Bst6I	CTCTTC	1 cut(s)	192
BstC8I	GCNNGC	1 cut(s)	102
BstDSI	CCRYGG	3 cut(s)	45, 51, 57
BstF5I	GGATG	1 cut(s)	418
BstHHI	GCGC	1 cut(s)	171
BstKTI	GATC	3 cut(s)	8, 82, 87
BstMAI	GTCTC	1 cut(s)	395
BstMBI	GATC	3 cut(s)	5, 79, 84
BstNSI	RCATGY	1 cut(s)	104
BstSCI	CCNGG	1 cut(s)	278
BsuRI	GGCC	5 cut(s)	50, 56, 62, 278, 500
BtgI	CCRYGG	3 cut(s)	45, 51, 57
BtsCI	GGATG	1 cut(s)	418
BtsI	GCAGTG	1 cut(s)	544
BtsIMutI	CAGTG	2 cut(s)	159, 544
BveI	ACCTGC	1 cut(s)	409
Cac8I	GCNNGC	1 cut(s)	102
CciI	TCATGA	1 cut(s)	492
CfoI	GCGC	1 cut(s)	171
Cfr13I	GGNCC	3 cut(s)	277, 307, 343
CseI	GACGC	1 cut(s)	412
Csp6I	GTAC	2 cut(s)	509, 590
CviAII	CATG	3 cut(s)	101, 380, 493
CviQI	GTAC	2 cut(s)	509, 590
DpnI	GATC	3 cut(s)	7, 81, 86
DpnII	GATC	3 cut(s)	5, 79, 84
EaeI	YGGCCR	3 cut(s)	48, 54, 498
Eam1104I	CTCTTC	1 cut(s)	192
EarI	CTCTTC	1 cut(s)	192
Ecl136II	GAGCTC	2 cut(s)	154, 202
Eco24I	GRGCYC	2 cut(s)	156, 204
Eco47I	GGWCC	2 cut(s)	307, 343
Eco53kI	GAGCTC	2 cut(s)	154, 202
Eco57I	CTGAAG	1 cut(s)	213
Eco88I	CYCGRG	2 cut(s)	203, 524
EcoICRI	GAGCTC	2 cut(s)	154, 202
EcoRI	GAATTC	1 cut(s)	92
EcoT38I	GRGCYC	2 cut(s)	156, 204
Esp3I	CGTCTC	1 cut(s)	395
FaeI	CATG	3 cut(s)	104, 383, 496
FaiI	YATR	9 cut(s)	29, 102, 275, 381, 386, 449, 474, 494, 513
FatI	CATG	3 cut(s)	100, 379, 492
FblI	GTMKAC	1 cut(s)	225
FokI	GGATG	1 cut(s)	425
FriOI	GRGCYC	2 cut(s)	156, 204
FspBI	CTAG	2 cut(s)	546, 610
GlaI	GCGC	1 cut(s)	170
HaeIII	GGCC	5 cut(s)	50, 56, 62, 278, 500
HapII	CCGG	2 cut(s)	280, 517
HgaI	GACGC	1 cut(s)	412
HhaI	GCGC	1 cut(s)	171
Hin1II	CATG	3 cut(s)	104, 383, 496
Hin6I	GCGC	1 cut(s)	169
HinP1I	GCGC	1 cut(s)	169
HincII	GTYRAC	2 cut(s)	226, 268
HindII	GTYRAC	2 cut(s)	226, 268
HpaI	GTTAAC	1 cut(s)	268
HpaII	CCGG	2 cut(s)	280, 517
HphI	GGTGA	2 cut(s)	220, 467
Hpy166II	GTNNAC	3 cut(s)	226, 268, 590
Hpy188I	TCNGA	2 cut(s)	84, 429
Hpy188III	TCNNGA	4 cut(s)	21, 74, 437, 493
Hpy8I	GTNNAC	3 cut(s)	226, 268, 590
Hpy99I	CGWCG	5 cut(s)	13, 36, 43, 134, 230
HpyAV	CCTTC	1 cut(s)	481
HpyCH4III	ACNGT	4 cut(s)	134, 163, 242, 455
HpyCH4IV	ACGT	3 cut(s)	11, 31, 228
HpyCH4V	TGCA	1 cut(s)	289
HpySE526I	ACGT	3 cut(s)	11, 31, 228
Hsp92II	CATG	3 cut(s)	104, 383, 496
HspAI	GCGC	1 cut(s)	169
KspAI	GTTAAC	1 cut(s)	268
Kzo9I	GATC	3 cut(s)	5, 79, 84
LguI	GCTCTTC	1 cut(s)	192
LmnI	GCTCC	1 cut(s)	519
LpnPI	CCDG	7 cut(s)	87, 275, 293, 323, 359, 404, 530
LweI	GCATC	2 cut(s)	156, 276
MaeI	CTAG	2 cut(s)	546, 610
MaeII	ACGT	3 cut(s)	11, 31, 228
MaeIII	GTNAC	1 cut(s)	554
MalI	GATC	3 cut(s)	7, 81, 86
MboI	GATC	3 cut(s)	5, 79, 84
MboII	GAAGA	4 cut(s)	7, 206, 209, 295
MhlI	GDGCHC	2 cut(s)	156, 204
MlsI	TGGCCA	1 cut(s)	500
MluCI	AATT	1 cut(s)	92
MluNI	TGGCCA	1 cut(s)	500
MnlI	CCTC	5 cut(s)	199, 214, 298, 404, 533
Mox20I	TGGCCA	1 cut(s)	500
MroXI	GAANNNNTTC	2 cut(s)	324, 353
MscI	TGGCCA	1 cut(s)	500
MseI	TTAA	3 cut(s)	216, 267, 423
MslI	CAYNNNNRTG	1 cut(s)	164
Msp20I	TGGCCA	1 cut(s)	500
MspI	CCGG	2 cut(s)	280, 517
MspR9I	CCNGG	1 cut(s)	280
NciI	CCSGG	1 cut(s)	280
NdeII	GATC	3 cut(s)	5, 79, 84
NlaIII	CATG	3 cut(s)	104, 383, 496
NlaIV	GGNNCC	2 cut(s)	136, 521
NmeAIII	GCCGAG	2 cut(s)	135, 375
NmuCI	GTSAC	1 cut(s)	554
NspI	RCATGY	1 cut(s)	104
PaeI	GCATGC	1 cut(s)	104
PaeR7I	CTCGAG	2 cut(s)	203, 524
PagI	TCATGA	1 cut(s)	492
PciSI	GCTCTTC	1 cut(s)	192
PcsI	WCGNNNNNNNCGW	1 cut(s)	28
PdmI	GAANNNNTTC	2 cut(s)	324, 353
Psp124BI	GAGCTC	2 cut(s)	156, 204
PspN4I	GGNNCC	2 cut(s)	136, 521
PspPI	GGNCC	3 cut(s)	277, 307, 343
PspXI	VCTCGAGB	2 cut(s)	203, 524
PsrI	GAACNNNNNNTAC	2 cut(s)	526, 558
RsaI	GTAC	2 cut(s)	510, 591
RsaNI	GTAC	2 cut(s)	509, 590
RseI	CAYNNNNRTG	1 cut(s)	164
SacI	GAGCTC	2 cut(s)	156, 204
SalI	GTCGAC	1 cut(s)	224
SapI	GCTCTTC	1 cut(s)	192
SaqAI	TTAA	3 cut(s)	216, 267, 423
Sau3AI	GATC	3 cut(s)	5, 79, 84
Sau96I	GGNCC	3 cut(s)	277, 307, 343
ScrFI	CCNGG	1 cut(s)	280
SduI	GDGCHC	2 cut(s)	156, 204
SfaNI	GCATC	2 cut(s)	156, 276
Sfr274I	CTCGAG	2 cut(s)	203, 524
SinI	GGWCC	2 cut(s)	307, 343
SlaI	CTCGAG	2 cut(s)	203, 524
SmiMI	CAYNNNNRTG	1 cut(s)	164
SmlI	CTYRAG	3 cut(s)	203, 314, 524
SmoI	CTYRAG	3 cut(s)	203, 314, 524
SphI	GCATGC	1 cut(s)	104
Sse9I	AATT	1 cut(s)	92
SspMI	CTAG	2 cut(s)	546, 610
SstI	GAGCTC	2 cut(s)	156, 204
StyD4I	CCNGG	1 cut(s)	278
TaaI	ACNGT	4 cut(s)	134, 163, 242, 455
TaiI	ACGT	3 cut(s)	14, 34, 231
TaqI	TCGA	8 cut(s)	8, 22, 34, 204, 225, 328, 336, 525
TaqII	GACCGA	1 cut(s)	167
TasI	AATT	1 cut(s)	92
TatI	WGTACW	1 cut(s)	508
Tru1I	TTAA	3 cut(s)	216, 267, 423
Tru9I	TTAA	3 cut(s)	216, 267, 423
TscAI	CASTG	2 cut(s)	166, 544
TseFI	GTSAC	1 cut(s)	554
Tsp45I	GTSAC	1 cut(s)	554
TspDTI	ATGAA	1 cut(s)	346
TspGWI	ACGGA	2 cut(s)	425, 563
TspRI	CASTG	2 cut(s)	166, 544
VpaK11BI	GGWCC	2 cut(s)	307, 343
XapI	RAATTY	1 cut(s)	92
XceI	RCATGY	1 cut(s)	104
XhoI	CTCGAG	2 cut(s)	203, 524
XmiI	GTMKAC	1 cut(s)	225
XmnI	GAANNNNTTC	2 cut(s)	324, 353
XspI	CTAG	2 cut(s)	546, 610

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.