Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002702

Physical Location & Seq

Genomic Coordinates Forward (+)

43729846 .. 43734603

Gene Structure 4758 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0318600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGAGATTAACCTTTTCCGGCTATGCTCCGGCCTCAAAGTCATCGGCTACTTCATGATCTTATTGGTCGCAGCCATCGTTGCTGTTTCCTACTACGCCGTCGTCGTGCTGACGTGGGGACCCGAGCTGCGAACCGGTGGCCTCCACTCTTTCTTGGCCATCTCCATTATCGTTGTCTTCCATTTTCTGCTTATAATGTTGTTGTGGTGTTACTTTATGGTAGTCTTTAGAGACCCTGGTTCTGTTCCGGAAAATTGGAAACCTCGTACACAGGAGGAAATTTTGGAGGCTGGTAGTTCTCTAACTTCGACGGAAATCACAGCACCCGAGGTTTTCAATTCCACGCAGTCTACAGATGGACAAGAAAGAAGACCAGAAGTAGGCTATTGTAGTCGATGCCAAAATGCCAAGCCACCACGATGCCATCATTGCTCTGTGTGTCAAAGATGTGTACTTAAGATGGATCACCATTGTGTTTGGGTGGTGAATTGTGTTGGTGCCACCAACTACAAGTCTTTTCTGCTTTTCTTGCTTTATACATTTTTGGAGACGACAATGGACACCTTAGTTTTGCTGCCGAATTTCATCAATTTTTTTTCTGAAGCCAAGAGTCATTCCACATCTCCTGGCAATCTAGCAGTTGTTTTTGTGACGTTTGTGCTTAATTTGGCCTTCTCATTGAGTCTTCTCTGTTTTGTGGTTATGCACATATCCCTTTTGTCAAGCAATACCACTTCAGTAGAGGTTCATGAGAAGAGAAGAGCAACCAGATGGAAGTATGATTTGGGCAGGATGAAAAACTTTGAGCAGGTTTTTGGCACAAAGAAAGCACTGTGGTTCTTCCCATTGTTGTCAAAGGAGGATTTAGACAACATACCTGCACTTCGGGGCCTGGAATTTCCCACAGTATCAGATAGCGAGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005856 GO:0005874 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0015630 GO:0019722 GO:0019932 GO:0023052 GO:0035556 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

ko04014 ko04015 ko04016 ko04020 ko04022 ko04024 ko04070 ko04114 ko04218 ko04261 ko04270 ko04371 ko04626 ko04713 ko04720 ko04722 ko04728 ko04740 ko04744 ko04745 ko04750 ko04910 ko04912 ko04915 ko04916 ko04921 ko04922 ko04924 ko04925 ko04970 ko04971 ko05010 ko05031 ko05034 ko05133 ko05152 ko05167 ko05200 ko05214 ko05418 map04014 map04015 map04016 map04020 map04022 map04024 map04070 map04114 map04218 map04261 map04270 map04371 map04626 map04713 map04720 map04722 map04728 map04740 map04744 map04745 map04750 map04910 map04912 map04915 map04916 map04921 map04922 map04924 map04925 map04970 map04971 map05010 map05031 map05034 map05133 map05152 map05167 map05200 map05214 map05418

Pfam Domains

Protein Families

EF-hand_1

Protein Analysis

308

Amino Acids

34.91

Weight (kDa)

7.08

Isoelectric Point (pI)

38.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DHHC	PF01529	129 - 251	1e-34	DHHC palmitoyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002702)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12310 AT1G62820
fragaria_vesca	FvH4_5g00650 FvH4_7g20700
malus_domestica	MD03G1151100.v1.1 MD04G1079800.v1.1 MD06G1074600.v1.1 MD07G1265800.v1.1 MD11G1152700.v1.1 MD17G1283300.v1.1
prunus_persica	Prupe.5G079300_v2.0.a1
pyrus_communis	pycom06g05340
rosa_chinensis	RchiOBHm_Chr1g0364931 RchiOBHm_Chr3g0455101 RchiOBHm_Chr5g0045151 RchiOBHm_Chr6g0299731 RchiOBHm_Chr7g0201611
rosa_laevigata	RLG00000027458
rosa_multiflora	Rmu_sc0002502.1_g000006 Rmu_sc0002895.1_g000017 Rmu_sc0006410.1_g000028 Rmu_sc0007033.1_g000001 Rmu_sc0011159.1_g000005 Rmu_ssc0000112.1_g000026 Rmu_ssc0000304.1_g000001
rosa_roxburghii	Rroxscaffold_3G00255200 Rroxscaffold_4G00292060
rosa_rugosa	Rorug01G0318600 Rorug07G0065200
rosa_samantha	Rh1BG288500 Rh1CG305200 Rh1DG320100 Rh2CG069200 Rh7AG191700 Rh7BG194000 Rh7DG197000
rosa_wichuraiana	Rw1G029000 Rw5G028070 Rw7G016820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	194
Acc36I	ACCTGC	2 cut(s)	799, 886
AccB1I	GGYRCC	1 cut(s)	497
AccI	GTMKAC	1 cut(s)	350
AccIII	TCCGGA	1 cut(s)	247
AclWI	GGATC	1 cut(s)	471
AcoI	YGGCCR	1 cut(s)	156
AcsI	RAATTY	3 cut(s)	279, 580, 896
AcuI	CTGAAG	2 cut(s)	621, 720
AfaI	GTAC	2 cut(s)	268, 453
AfiI	CCNNNNNNNGG	1 cut(s)	380
AflII	CTTAAG	1 cut(s)	455
AgeI	ACCGGT	1 cut(s)	134
AgsI	TTSAA	1 cut(s)	337
AjiI	CACGTC	1 cut(s)	114
AjnI	CCWGG	3 cut(s)	235, 625, 891
AjuI	GAANNNNNNNTTGG	2 cut(s)	767, 799
AleI	CACNNNNGTG	1 cut(s)	471
AluBI	AGCT	1 cut(s)	127
AluI	AGCT	1 cut(s)	127
Alw26I	GTCTC	2 cut(s)	225, 542
AlwI	GGATC	1 cut(s)	471
Ama87I	CYCGRG	2 cut(s)	122, 326
Aor13HI	TCCGGA	1 cut(s)	247
AoxI	GGCC	5 cut(s)	31, 139, 156, 669, 889
ApeKI	GCWGC	3 cut(s)	71, 127, 574
ApoI	RAATTY	3 cut(s)	279, 580, 896
AsiGI	ACCGGT	1 cut(s)	134
AspS9I	GGNCC	2 cut(s)	119, 889
AsuHPI	GGTGA	2 cut(s)	458, 496
AvaI	CYCGRG	2 cut(s)	122, 326
AvaII	GGWCC	1 cut(s)	119
BalI	TGGCCA	1 cut(s)	158
BanI	GGYRCC	1 cut(s)	497
BbsI	GAAGAC	3 cut(s)	169, 376, 677
BbvI	GCAGC	3 cut(s)	83, 114, 561
BccI	CCATC	6 cut(s)	83, 167, 350, 432, 454, 765
BceAI	ACGGC	1 cut(s)	83
BciT130I	CCWGG	3 cut(s)	237, 627, 893
BcoDI	GTCTC	2 cut(s)	225, 542
BfaI	CTAG	1 cut(s)	635
BfmI	CTRYAG	1 cut(s)	351
BfrI	CTTAAG	1 cut(s)	455
BfuAI	ACCTGC	2 cut(s)	799, 886
BisI	GCNGC	3 cut(s)	72, 128, 575
BlsI	GCNGC	3 cut(s)	73, 129, 576
Bme1390I	CCNGG	3 cut(s)	237, 627, 893
Bme18I	GGWCC	1 cut(s)	119
BmeT110I	CYCGRG	2 cut(s)	122, 326
BmgBI	CACGTC	1 cut(s)	114
BmgT120I	GGNCC	2 cut(s)	119, 889
BmiI	GGNNCC	4 cut(s)	120, 121, 499, 890
BmrFI	CCNGG	3 cut(s)	237, 627, 893
BmsI	GCATC	2 cut(s)	386, 410
BpiI	GAAGAC	3 cut(s)	169, 376, 677
BsaI	GGTCTC	1 cut(s)	225
BsaJI	CCNNGG	2 cut(s)	235, 327
BsaWI	WCCGGW	2 cut(s)	134, 247
Bsc4I	CCNNNNNNNGG	1 cut(s)	380
Bse118I	RCCGGY	1 cut(s)	134
Bse3DI	GCAATG	1 cut(s)	427
BseAI	TCCGGA	1 cut(s)	247
BseBI	CCWGG	3 cut(s)	237, 627, 893
BseDI	CCNNGG	2 cut(s)	235, 327
BseGI	GGATG	1 cut(s)	798
BseLI	CCNNNNNNNGG	1 cut(s)	380
BseMI	GCAATG	1 cut(s)	427
BseXI	GCAGC	3 cut(s)	83, 114, 561
BsgI	GTGCAG	1 cut(s)	864
BshFI	GGCC	5 cut(s)	33, 141, 158, 671, 891
BshNI	GGYRCC	1 cut(s)	497
BshTI	ACCGGT	1 cut(s)	134
BsiHKCI	CYCGRG	2 cut(s)	122, 326
BsiSI	CCGG	4 cut(s)	19, 30, 135, 248
BslFI	GGGAC	1 cut(s)	132
BslI	CCNNNNNNNGG	1 cut(s)	380
BsmAI	GTCTC	2 cut(s)	225, 542
BsmBI	CGTCTC	1 cut(s)	542
BsmFI	GGGAC	1 cut(s)	132
BsnI	GGCC	5 cut(s)	33, 141, 158, 671, 891
Bso31I	GGTCTC	1 cut(s)	225
BsoBI	CYCGRG	2 cut(s)	122, 326
Bsp13I	TCCGGA	1 cut(s)	247
Bsp143I	GATC	2 cut(s)	57, 463
BspANI	GGCC	5 cut(s)	33, 141, 158, 671, 891
BspEI	TCCGGA	1 cut(s)	247
BspHI	TCATGA	2 cut(s)	54, 748
BspLI	GGNNCC	4 cut(s)	120, 121, 499, 890
BspMI	ACCTGC	2 cut(s)	799, 886
BspPI	GGATC	1 cut(s)	471
BspQI	GCTCTTC	1 cut(s)	754
BspT107I	GGYRCC	1 cut(s)	497
BspTI	CTTAAG	1 cut(s)	455
BspTNI	GGTCTC	1 cut(s)	225
BsrDI	GCAATG	1 cut(s)	427
BsrFI	RCCGGY	1 cut(s)	134
BssAI	RCCGGY	1 cut(s)	134
BssECI	CCNNGG	2 cut(s)	235, 327
BssMI	GATC	2 cut(s)	57, 463
Bst2UI	CCWGG	3 cut(s)	237, 627, 893
Bst4CI	ACNGT	2 cut(s)	834, 907
Bst6I	CTCTTC	2 cut(s)	749, 754
BstAFI	CTTAAG	1 cut(s)	455
BstDEI	CTNAG	1 cut(s)	565
BstF5I	GGATG	1 cut(s)	798
BstKTI	GATC	2 cut(s)	60, 466
BstMAI	GTCTC	2 cut(s)	225, 542
BstMBI	GATC	2 cut(s)	57, 463
BstMWI	GCNNNNNNNGC	3 cut(s)	80, 429, 529
BstNI	CCWGG	3 cut(s)	237, 627, 893
BstSCI	CCNGG	3 cut(s)	235, 625, 891
BstSFI	CTRYAG	1 cut(s)	351
BstV1I	GCAGC	3 cut(s)	83, 114, 561
BstV2I	GAAGAC	3 cut(s)	169, 376, 677
BsuRI	GGCC	5 cut(s)	33, 141, 158, 671, 891
BtrI	CACGTC	1 cut(s)	114
BtsCI	GGATG	1 cut(s)	798
BtsIMutI	CAGTG	1 cut(s)	830
BveI	ACCTGC	2 cut(s)	799, 886
CciI	TCATGA	2 cut(s)	54, 748
Cfr10I	RCCGGY	1 cut(s)	134
Cfr13I	GGNCC	2 cut(s)	119, 889
Csp6I	GTAC	2 cut(s)	267, 452
CspAI	ACCGGT	1 cut(s)	134
CviAII	CATG	2 cut(s)	55, 749
CviQI	GTAC	2 cut(s)	267, 452
DdeI	CTNAG	1 cut(s)	565
DpnI	GATC	2 cut(s)	59, 465
DpnII	GATC	2 cut(s)	57, 463
EaeI	YGGCCR	1 cut(s)	156
Eam1104I	CTCTTC	2 cut(s)	749, 754
EarI	CTCTTC	2 cut(s)	749, 754
Eco31I	GGTCTC	1 cut(s)	225
Eco47I	GGWCC	1 cut(s)	119
Eco57I	CTGAAG	2 cut(s)	621, 720
Eco88I	CYCGRG	2 cut(s)	122, 326
EcoO109I	RGGNCCY	2 cut(s)	119, 889
EcoRII	CCWGG	3 cut(s)	235, 625, 891
Esp3I	CGTCTC	1 cut(s)	542
FaeI	CATG	2 cut(s)	58, 752
FaqI	GGGAC	1 cut(s)	132
FatI	CATG	2 cut(s)	54, 748
FblI	GTMKAC	1 cut(s)	350
Fnu4HI	GCNGC	3 cut(s)	72, 128, 575
FokI	GGATG	1 cut(s)	805
Fsp4HI	GCNGC	3 cut(s)	72, 128, 575
FspBI	CTAG	1 cut(s)	635
GluI	GCNGC	3 cut(s)	72, 128, 575
HaeIII	GGCC	5 cut(s)	33, 141, 158, 671, 891
HapII	CCGG	4 cut(s)	19, 30, 135, 248
Hin1II	CATG	2 cut(s)	58, 752
HinfI	GANTC	2 cut(s)	610, 682
HpaII	CCGG	4 cut(s)	19, 30, 135, 248
HphI	GGTGA	2 cut(s)	458, 496
Hpy166II	GTNNAC	3 cut(s)	269, 351, 452
Hpy188I	TCNGA	2 cut(s)	601, 913
Hpy188III	TCNNGA	3 cut(s)	55, 248, 749
Hpy8I	GTNNAC	3 cut(s)	269, 351, 452
Hpy99I	CGWCG	3 cut(s)	104, 107, 313
HpyAV	CCTTC	1 cut(s)	682
HpyCH4III	ACNGT	2 cut(s)	834, 907
HpyCH4IV	ACGT	2 cut(s)	113, 653
HpyCH4V	TGCA	2 cut(s)	706, 881
HpyF10VI	GCNNNNNNNGC	3 cut(s)	80, 429, 529
HpyF3I	CTNAG	1 cut(s)	565
HpySE526I	ACGT	2 cut(s)	113, 653
Hsp92II	CATG	2 cut(s)	58, 752
KflI	GGGWCCC	1 cut(s)	119
Kpn2I	TCCGGA	1 cut(s)	247
Kzo9I	GATC	2 cut(s)	57, 463
LguI	GCTCTTC	1 cut(s)	754
LmnI	GCTCC	1 cut(s)	32
Lsp1109I	GCAGC	3 cut(s)	83, 114, 561
LweI	GCATC	2 cut(s)	386, 410
MaeI	CTAG	1 cut(s)	635
MaeII	ACGT	2 cut(s)	113, 653
MaeIII	GTNAC	2 cut(s)	209, 649
MalI	GATC	2 cut(s)	59, 465
MboI	GATC	2 cut(s)	57, 463
MboII	GAAGA	6 cut(s)	169, 381, 677, 766, 771, 832
MlsI	TGGCCA	1 cut(s)	158
MluCI	AATT	8 cut(s)	253, 279, 337, 487, 580, 589, 664, 896
MluNI	TGGCCA	1 cut(s)	158
MlyI	GAGTC	2 cut(s)	619, 691
MnlI	CCTC	9 cut(s)	44, 152, 268, 273, 280, 322, 736, 853, 913
Mox20I	TGGCCA	1 cut(s)	158
MroI	TCCGGA	1 cut(s)	247
MscI	TGGCCA	1 cut(s)	158
MseI	TTAA	3 cut(s)	9, 456, 663
MslI	CAYNNNNRTG	2 cut(s)	418, 471
Msp20I	TGGCCA	1 cut(s)	158
MspCI	CTTAAG	1 cut(s)	455
MspI	CCGG	4 cut(s)	19, 30, 135, 248
MspR9I	CCNGG	3 cut(s)	237, 627, 893
MvaI	CCWGG	3 cut(s)	237, 627, 893
MwoI	GCNNNNNNNGC	3 cut(s)	80, 429, 529
NdeII	GATC	2 cut(s)	57, 463
NlaIII	CATG	2 cut(s)	58, 752
NlaIV	GGNNCC	4 cut(s)	120, 121, 499, 890
NmuCI	GTSAC	1 cut(s)	649
OliI	CACNNNNGTG	1 cut(s)	471
PagI	TCATGA	2 cut(s)	54, 748
PciSI	GCTCTTC	1 cut(s)	754
PcsI	WCGNNNNNNNCGW	2 cut(s)	75, 102
PinAI	ACCGGT	1 cut(s)	134
PkrI	GCNGC	3 cut(s)	73, 129, 576
PleI	GAGTC	2 cut(s)	618, 690
PpsI	GAGTC	2 cut(s)	618, 690
PpuMI	RGGWCCY	1 cut(s)	119
PsiI	TTATAA	1 cut(s)	194
Psp5II	RGGWCCY	1 cut(s)	119
Psp6I	CCWGG	3 cut(s)	235, 625, 891
PspGI	CCWGG	3 cut(s)	235, 625, 891
PspN4I	GGNNCC	4 cut(s)	120, 121, 499, 890
PspPI	GGNCC	2 cut(s)	119, 889
PspPPI	RGGWCCY	1 cut(s)	119
RsaI	GTAC	2 cut(s)	268, 453
RsaNI	GTAC	2 cut(s)	267, 452
RseI	CAYNNNNRTG	2 cut(s)	418, 471
SapI	GCTCTTC	1 cut(s)	754
SaqAI	TTAA	3 cut(s)	9, 456, 663
SatI	GCNGC	3 cut(s)	72, 128, 575
Sau3AI	GATC	2 cut(s)	57, 463
Sau96I	GGNCC	2 cut(s)	119, 889
SchI	GAGTC	2 cut(s)	619, 691
ScrFI	CCNGG	3 cut(s)	237, 627, 893
SfaNI	GCATC	2 cut(s)	386, 410
SfcI	CTRYAG	1 cut(s)	351
SinI	GGWCC	1 cut(s)	119
SmiMI	CAYNNNNRTG	2 cut(s)	418, 471
SmlI	CTYRAG	1 cut(s)	455
SmoI	CTYRAG	1 cut(s)	455
Sse9I	AATT	8 cut(s)	253, 279, 337, 487, 580, 589, 664, 896
SspMI	CTAG	1 cut(s)	635
StyD4I	CCNGG	3 cut(s)	235, 625, 891
TaaI	ACNGT	2 cut(s)	834, 907
TaiI	ACGT	2 cut(s)	116, 656
TaqI	TCGA	2 cut(s)	308, 394
TasI	AATT	8 cut(s)	253, 279, 337, 487, 580, 589, 664, 896
TatI	WGTACW	1 cut(s)	451
Tru1I	TTAA	3 cut(s)	9, 456, 663
Tru9I	TTAA	3 cut(s)	9, 456, 663
TscAI	CASTG	1 cut(s)	837
TseFI	GTSAC	1 cut(s)	649
TseI	GCWGC	3 cut(s)	71, 127, 574
Tsp45I	GTSAC	1 cut(s)	649
TspDTI	ATGAA	4 cut(s)	43, 574, 737, 809
TspGWI	ACGGA	1 cut(s)	326
TspRI	CASTG	1 cut(s)	837
Vha464I	CTTAAG	1 cut(s)	455
VpaK11BI	GGWCC	1 cut(s)	119
XapI	RAATTY	3 cut(s)	279, 580, 896
XmiI	GTMKAC	1 cut(s)	350
XspI	CTAG	1 cut(s)	635

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.