Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002702

Physical Location & Seq

Genomic Coordinates Reverse (-)

23263214 .. 23264399

Gene Structure 1186 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G62820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGAGCAAGGATGGTTTGAGCAACGACCAAGTCTCATCAATGAAGGAAGCATTCATGCTATTCGACACAGACGGCGACGGCAAAATCGCACCGTCGGAGCTCGGAATCTTAATGCGGTCACTCGGCGGCAATCCAACAGAATCACAACTCAAATCAATCATAACGACGGAGAATCTCTCGTCTCCGTTCGATTTCAATCGATTCCTAGATCTAATGGCGAAACATCTGAAAACAGAGCCGTTCGATCGCCAGCTTCGTGATGCGTTCAAAGTGCTTGACAAGGAAGGTACTGGATTCGTTGCTGTGGCAGATCTGAGACATATACTTACGAGTATCGGTGAGAAATTGCAGCCGAGTGAGTTTGATGAGTGGATCAAAGAGGTTGATGTTGGATCTGATGGTAAGATCCGGTATGAGGATTTTATTGCTAGAATGGTTGCTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_6 EF-hand_7

Protein Analysis

148

Amino Acids

16.58

Weight (kDa)

4.86

Isoelectric Point (pI)

41.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	13 - 54	2.1e-06	EF-hand domain pair
EF-hand_6	PF13405	14 - 42	2.4e-07	EF-hand domain
EF-hand_1	PF00036	14 - 41	1.4e-06	EF hand domain
EF-hand_7	PF13499	83 - 145	2.7e-16	EF-hand domain pair
EF-hand_6	PF13405	84 - 113	3.2e-06	EF-hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002702)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12310 AT1G62820
fragaria_vesca	FvH4_5g00650 FvH4_7g20700
malus_domestica	MD03G1151100.v1.1 MD04G1079800.v1.1 MD06G1074600.v1.1 MD07G1265800.v1.1 MD11G1152700.v1.1 MD17G1283300.v1.1
prunus_persica	Prupe.5G079300_v2.0.a1
pyrus_communis	pycom06g05340
rosa_chinensis	RchiOBHm_Chr1g0364931 RchiOBHm_Chr3g0455101 RchiOBHm_Chr5g0045151 RchiOBHm_Chr6g0299731 RchiOBHm_Chr7g0201611
rosa_laevigata	RLG00000027458
rosa_multiflora	Rmu_sc0002502.1_g000006 Rmu_sc0002895.1_g000017 Rmu_sc0006410.1_g000028 Rmu_sc0007033.1_g000001 Rmu_sc0011159.1_g000005 Rmu_ssc0000112.1_g000026 Rmu_ssc0000304.1_g000001
rosa_roxburghii	Rroxscaffold_3G00255200 Rroxscaffold_4G00292060
rosa_rugosa	Rorug01G0318600 Rorug07G0065200
rosa_samantha	Rh1BG288500 Rh1CG305200 Rh1DG320100 Rh2CG069200 Rh7AG191700 Rh7BG194000 Rh7DG197000
rosa_wichuraiana	Rw1G029000 Rw5G028070 Rw7G016820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	115, 126
AclWI	GGATC	3 cut(s)	380, 400, 400
AfaI	GTAC	1 cut(s)	289
AfiI	CCNNNNNNNGG	1 cut(s)	415
AgsI	TTSAA	2 cut(s)	196, 268
AluBI	AGCT	2 cut(s)	100, 253
AluI	AGCT	2 cut(s)	100, 253
Alw21I	GWGCWC	1 cut(s)	102
Alw26I	GTCTC	3 cut(s)	37, 186, 310
AlwI	GGATC	3 cut(s)	380, 400, 400
ApeKI	GCWGC	1 cut(s)	349
AsuHPI	GGTGA	1 cut(s)	350
BanII	GRGCYC	1 cut(s)	102
Bbv12I	GWGCWC	1 cut(s)	102
BbvI	GCAGC	1 cut(s)	361
BccI	CCATC	2 cut(s)	5, 392
BceAI	ACGGC	3 cut(s)	88, 94, 223
BcoDI	GTCTC	3 cut(s)	37, 186, 310
BfaI	CTAG	2 cut(s)	206, 429
BglII	AGATCT	2 cut(s)	208, 310
BisI	GCNGC	2 cut(s)	127, 350
BlsI	GCNGC	2 cut(s)	128, 351
BmsI	GCATC	1 cut(s)	250
BplI	GAGNNNNNCTC	2 cut(s)	161, 193
Bsa29I	ATCGAT	1 cut(s)	199
BsaBI	GATNNNNATC	1 cut(s)	195
BsaWI	WCCGGW	1 cut(s)	408
Bsc4I	CCNNNNNNNGG	1 cut(s)	415
Bse1I	ACTGG	1 cut(s)	295
Bse8I	GATNNNNATC	1 cut(s)	195
BseCI	ATCGAT	1 cut(s)	199
BseGI	GGATG	1 cut(s)	16
BseJI	GATNNNNATC	1 cut(s)	195
BseLI	CCNNNNNNNGG	1 cut(s)	415
BseMII	CTCAG	1 cut(s)	305
BseNI	ACTGG	1 cut(s)	295
BseXI	GCAGC	1 cut(s)	361
Bsh1285I	CGRYCG	1 cut(s)	247
BshVI	ATCGAT	1 cut(s)	199
BsiEI	CGRYCG	1 cut(s)	247
BsiHKAI	GWGCWC	1 cut(s)	102
BsiSI	CCGG	1 cut(s)	409
BslI	CCNNNNNNNGG	1 cut(s)	415
BsmAI	GTCTC	3 cut(s)	37, 186, 310
BsmBI	CGTCTC	1 cut(s)	186
BsmI	GAATGC	1 cut(s)	50
Bsp1286I	GDGCHC	1 cut(s)	102
Bsp143I	GATC	6 cut(s)	208, 244, 310, 372, 392, 405
BspACI	CCGC	2 cut(s)	115, 126
BspCNI	CTCAG	1 cut(s)	306
BspDI	ATCGAT	1 cut(s)	199
BspPI	GGATC	3 cut(s)	380, 400, 400
BsrI	ACTGG	1 cut(s)	295
BssMI	GATC	6 cut(s)	208, 244, 310, 372, 392, 405
Bst4CI	ACNGT	1 cut(s)	93
BstC8I	GCNNGC	1 cut(s)	251
BstDEI	CTNAG	2 cut(s)	314, 441
BstF5I	GGATG	1 cut(s)	16
BstKTI	GATC	6 cut(s)	211, 247, 313, 375, 395, 408
BstMAI	GTCTC	3 cut(s)	37, 186, 310
BstMBI	GATC	6 cut(s)	208, 244, 310, 372, 392, 405
BstMCI	CGRYCG	1 cut(s)	247
BstV1I	GCAGC	1 cut(s)	361
BstX2I	RGATCY	4 cut(s)	208, 310, 392, 405
BstYI	RGATCY	4 cut(s)	208, 310, 392, 405
Bsu15I	ATCGAT	1 cut(s)	199
BsuTUI	ATCGAT	1 cut(s)	199
BtsCI	GGATG	1 cut(s)	16
Cac8I	GCNNGC	1 cut(s)	251
ClaI	ATCGAT	1 cut(s)	199
Csp6I	GTAC	1 cut(s)	288
CviAII	CATG	1 cut(s)	55
CviJI	RGCY	4 cut(s)	100, 238, 253, 352
CviKI_1	RGCY	4 cut(s)	100, 238, 253, 352
CviQI	GTAC	1 cut(s)	288
DdeI	CTNAG	2 cut(s)	314, 441
DpnI	GATC	6 cut(s)	210, 246, 312, 374, 394, 407
DpnII	GATC	6 cut(s)	208, 244, 310, 372, 392, 405
Ecl136II	GAGCTC	1 cut(s)	100
Eco24I	GRGCYC	1 cut(s)	102
Eco53kI	GAGCTC	1 cut(s)	100
EcoICRI	GAGCTC	1 cut(s)	100
EcoT38I	GRGCYC	1 cut(s)	102
Esp3I	CGTCTC	1 cut(s)	186
FaeI	CATG	1 cut(s)	58
FaiI	YATR	5 cut(s)	56, 161, 321, 323, 414
FatI	CATG	1 cut(s)	54
Fnu4HI	GCNGC	2 cut(s)	127, 350
FokI	GGATG	1 cut(s)	23
FriOI	GRGCYC	1 cut(s)	102
Fsp4HI	GCNGC	2 cut(s)	127, 350
FspBI	CTAG	2 cut(s)	206, 429
GluI	GCNGC	2 cut(s)	127, 350
HapII	CCGG	1 cut(s)	409
Hin1II	CATG	1 cut(s)	58
HinfI	GANTC	5 cut(s)	105, 140, 172, 201, 294
HpaII	CCGG	1 cut(s)	409
HphI	GGTGA	1 cut(s)	350
Hpy188I	TCNGA	5 cut(s)	97, 104, 228, 315, 397
Hpy188III	TCNNGA	1 cut(s)	257
Hpy99I	CGWCG	3 cut(s)	80, 97, 169
HpyAV	CCTTC	2 cut(s)	37, 278
HpyCH4III	ACNGT	1 cut(s)	93
HpyCH4V	TGCA	1 cut(s)	349
HpyF3I	CTNAG	2 cut(s)	314, 441
Hsp92II	CATG	1 cut(s)	58
Kzo9I	GATC	6 cut(s)	208, 244, 310, 372, 392, 405
LmnI	GCTCC	1 cut(s)	97
LpnPI	CCDG	3 cut(s)	263, 276, 422
Lsp1109I	GCAGC	1 cut(s)	361
LweI	GCATC	1 cut(s)	250
MaeI	CTAG	2 cut(s)	206, 429
MaeIII	GTNAC	1 cut(s)	117
MalI	GATC	6 cut(s)	210, 246, 312, 374, 394, 407
MboI	GATC	6 cut(s)	208, 244, 310, 372, 392, 405
MflI	RGATCY	4 cut(s)	208, 310, 392, 405
MhlI	GDGCHC	1 cut(s)	102
MluCI	AATT	1 cut(s)	344
MmeI	TCCRAC	3 cut(s)	75, 158, 370
MnlI	CCTC	2 cut(s)	373, 409
MseI	TTAA	1 cut(s)	110
MspI	CCGG	1 cut(s)	409
Mva1269I	GAATGC	1 cut(s)	50
NdeII	GATC	6 cut(s)	208, 244, 310, 372, 392, 405
NlaIII	CATG	1 cut(s)	58
NmeAIII	GCCGAG	2 cut(s)	102, 378
NmuCI	GTSAC	1 cut(s)	117
PcsI	WCGNNNNNNNCGW	1 cut(s)	253
PctI	GAATGC	1 cut(s)	50
PfeI	GAWTC	5 cut(s)	105, 140, 172, 201, 294
PflFI	GACNNNGTC	1 cut(s)	29
PkrI	GCNGC	2 cut(s)	128, 351
Ple19I	CGATCG	1 cut(s)	247
Psp124BI	GAGCTC	1 cut(s)	102
PsuI	RGATCY	4 cut(s)	208, 310, 392, 405
PsyI	GACNNNGTC	1 cut(s)	29
PvuI	CGATCG	1 cut(s)	247
RsaI	GTAC	1 cut(s)	289
RsaNI	GTAC	1 cut(s)	288
SacI	GAGCTC	1 cut(s)	102
SaqAI	TTAA	1 cut(s)	110
SatI	GCNGC	2 cut(s)	127, 350
Sau3AI	GATC	6 cut(s)	208, 244, 310, 372, 392, 405
SduI	GDGCHC	1 cut(s)	102
SetI	ASST	4 cut(s)	102, 255, 289, 384
SfaNI	GCATC	1 cut(s)	250
Sse9I	AATT	1 cut(s)	344
SsiI	CCGC	2 cut(s)	115, 126
SspMI	CTAG	2 cut(s)	206, 429
SstI	GAGCTC	1 cut(s)	102
TaaI	ACNGT	1 cut(s)	93
TaqI	TCGA	4 cut(s)	63, 189, 199, 243
TasI	AATT	1 cut(s)	344
TauI	GCSGC	1 cut(s)	129
TfiI	GAWTC	5 cut(s)	105, 140, 172, 201, 294
Tru1I	TTAA	1 cut(s)	110
Tru9I	TTAA	1 cut(s)	110
TseFI	GTSAC	1 cut(s)	117
TseI	GCWGC	1 cut(s)	349
Tsp45I	GTSAC	1 cut(s)	117
TspDTI	ATGAA	2 cut(s)	43, 56
TspGWI	ACGGA	2 cut(s)	174, 182
Tth111I	GACNNNGTC	1 cut(s)	29
XspI	CTAG	2 cut(s)	206, 429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.