Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002702

Physical Location & Seq

Genomic Coordinates Forward (+)

60764774 .. 60765085

Gene Structure 312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26913

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGAAACCGTGGAAGGGTTACTATCACTCCGACCCAGGCCCAACTCAAATCCATAGTCGCCAAGAAGAAGCTGACCGCCCCCTTCGACTTCAAACGCTTCCTGGAGTTGATGGGGATGCACATGAAGCGTCACCCTTCAATCACCAGCTCCGCAACACCTTCAAGGTCCTCGACAAGGACGCCACCTACTTCGTCTCCGTCTCGGAGCTCCGGCACATCCTCACCAGCATCGGCGAGAAATTGGAGGTCTTCCCTAAGAACTTTGGGGCCGGCGTTGTTGTTGGTGGCGCCAGTAGAAATGCGCTGGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_6 EF-hand_7

Protein Analysis

103

Amino Acids

11.41

Weight (kDa)

6.97

Isoelectric Point (pI)

42.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002702)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12310 AT1G62820
fragaria_vesca	FvH4_5g00650 FvH4_7g20700
malus_domestica	MD03G1151100.v1.1 MD04G1079800.v1.1 MD06G1074600.v1.1 MD07G1265800.v1.1 MD11G1152700.v1.1 MD17G1283300.v1.1
prunus_persica	Prupe.5G079300_v2.0.a1
pyrus_communis	pycom06g05340
rosa_chinensis	RchiOBHm_Chr1g0364931 RchiOBHm_Chr3g0455101 RchiOBHm_Chr5g0045151 RchiOBHm_Chr6g0299731 RchiOBHm_Chr7g0201611
rosa_laevigata	RLG00000027458
rosa_multiflora	Rmu_sc0002502.1_g000006 Rmu_sc0002895.1_g000017 Rmu_sc0006410.1_g000028 Rmu_sc0007033.1_g000001 Rmu_sc0011159.1_g000005 Rmu_ssc0000112.1_g000026 Rmu_ssc0000304.1_g000001
rosa_roxburghii	Rroxscaffold_3G00255200 Rroxscaffold_4G00292060
rosa_rugosa	Rorug01G0318600 Rorug07G0065200
rosa_samantha	Rh1BG288500 Rh1CG305200 Rh1DG320100 Rh2CG069200 Rh7AG191700 Rh7BG194000 Rh7DG197000
rosa_wichuraiana	Rw1G029000 Rw5G028070 Rw7G016820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	287
AciI	CCGC	2 cut(s)	76, 151
AcyI	GRCGYC	2 cut(s)	180, 288
AfiI	CCNNNNNNNGG	2 cut(s)	14, 175
AgsI	TTSAA	3 cut(s)	92, 139, 163
AjnI	CCWGG	2 cut(s)	34, 100
AluBI	AGCT	3 cut(s)	71, 148, 208
AluI	AGCT	3 cut(s)	71, 148, 208
Alw21I	GWGCWC	1 cut(s)	210
Alw26I	GTCTC	2 cut(s)	199, 205
AoxI	GGCC	2 cut(s)	37, 267
ArsI	GACNNNNNNTTYG	2 cut(s)	40, 72
AspLEI	GCGC	2 cut(s)	290, 304
AspS9I	GGNCC	3 cut(s)	38, 166, 267
AsuHPI	GGTGA	3 cut(s)	123, 134, 214
AvaII	GGWCC	1 cut(s)	166
BanI	GGYRCC	1 cut(s)	287
BanII	GRGCYC	1 cut(s)	210
BbsI	GAAGAC	1 cut(s)	241
Bbv12I	GWGCWC	1 cut(s)	210
BccI	CCATC	1 cut(s)	104
BciT130I	CCWGG	2 cut(s)	36, 102
BcoDI	GTCTC	2 cut(s)	199, 205
BfoI	RGCGCY	1 cut(s)	291
Bme1390I	CCNGG	2 cut(s)	36, 102
Bme18I	GGWCC	1 cut(s)	166
BmgT120I	GGNCC	3 cut(s)	38, 166, 267
BmiI	GGNNCC	2 cut(s)	268, 289
BmrFI	CCNGG	2 cut(s)	36, 102
BmsI	GCATC	2 cut(s)	106, 237
BpiI	GAAGAC	1 cut(s)	241
BpmI	CTGGAG	1 cut(s)	123
BsaHI	GRCGYC	2 cut(s)	180, 288
BsaJI	CCNNGG	2 cut(s)	8, 34
BsaXI	ACNNNNNCTCC	4 cut(s)	11, 41, 179, 209
Bsc4I	CCNNNNNNNGG	2 cut(s)	14, 175
Bse118I	RCCGGY	1 cut(s)	269
Bse1I	ACTGG	1 cut(s)	291
BseBI	CCWGG	2 cut(s)	36, 102
BseDI	CCNNGG	2 cut(s)	8, 34
BseGI	GGATG	2 cut(s)	121, 216
BseLI	CCNNNNNNNGG	2 cut(s)	14, 175
BseNI	ACTGG	1 cut(s)	291
BshFI	GGCC	2 cut(s)	39, 269
BshNI	GGYRCC	1 cut(s)	287
BsiHKAI	GWGCWC	1 cut(s)	210
BsiSI	CCGG	2 cut(s)	211, 270
BslI	CCNNNNNNNGG	2 cut(s)	14, 175
BsmAI	GTCTC	2 cut(s)	199, 205
BsmBI	CGTCTC	2 cut(s)	199, 205
BsnI	GGCC	2 cut(s)	39, 269
Bsp1286I	GDGCHC	1 cut(s)	210
BspACI	CCGC	2 cut(s)	76, 151
BspANI	GGCC	2 cut(s)	39, 269
BspLI	GGNNCC	2 cut(s)	268, 289
BspT107I	GGYRCC	1 cut(s)	287
BsrFI	RCCGGY	1 cut(s)	269
BsrI	ACTGG	1 cut(s)	291
BssAI	RCCGGY	1 cut(s)	269
BssECI	CCNNGG	2 cut(s)	8, 34
BssNI	GRCGYC	2 cut(s)	180, 288
Bst2UI	CCWGG	2 cut(s)	36, 102
Bst4CI	ACNGT	1 cut(s)	9
BstACI	GRCGYC	2 cut(s)	180, 288
BstC8I	GCNNGC	2 cut(s)	271, 306
BstDEI	CTNAG	1 cut(s)	255
BstDSI	CCRYGG	1 cut(s)	8
BstENI	CCTNNNNNAGG	1 cut(s)	173
BstF5I	GGATG	2 cut(s)	121, 216
BstH2I	RGCGCY	1 cut(s)	291
BstHHI	GCGC	2 cut(s)	290, 304
BstMAI	GTCTC	2 cut(s)	199, 205
BstMWI	GCNNNNNNNGC	1 cut(s)	125
BstNI	CCWGG	2 cut(s)	36, 102
BstSCI	CCNGG	2 cut(s)	34, 100
BstV2I	GAAGAC	1 cut(s)	241
BsuRI	GGCC	2 cut(s)	39, 269
BtgI	CCRYGG	1 cut(s)	8
BtsCI	GGATG	2 cut(s)	121, 216
Cac8I	GCNNGC	2 cut(s)	271, 306
CfoI	GCGC	2 cut(s)	290, 304
Cfr10I	RCCGGY	1 cut(s)	269
Cfr13I	GGNCC	3 cut(s)	38, 166, 267
CseI	GACGC	2 cut(s)	117, 188
CviAII	CATG	1 cut(s)	122
CviJI	RGCY	5 cut(s)	39, 71, 148, 208, 269
CviKI_1	RGCY	5 cut(s)	39, 71, 148, 208, 269
DdeI	CTNAG	1 cut(s)	255
DinI	GGCGCC	1 cut(s)	289
Ecl136II	GAGCTC	1 cut(s)	208
Eco24I	GRGCYC	1 cut(s)	210
Eco47I	GGWCC	1 cut(s)	166
Eco53kI	GAGCTC	1 cut(s)	208
EcoICRI	GAGCTC	1 cut(s)	208
EcoNI	CCTNNNNNAGG	1 cut(s)	173
EcoO109I	RGGNCCY	1 cut(s)	166
EcoRII	CCWGG	2 cut(s)	34, 100
EcoT38I	GRGCYC	1 cut(s)	210
EgeI	GGCGCC	1 cut(s)	289
EheI	GGCGCC	1 cut(s)	289
Esp3I	CGTCTC	2 cut(s)	199, 205
FaeI	CATG	1 cut(s)	125
FaiI	YATR	2 cut(s)	54, 123
FatI	CATG	1 cut(s)	121
FokI	GGATG	2 cut(s)	128, 203
FriOI	GRGCYC	1 cut(s)	210
GlaI	GCGC	2 cut(s)	289, 303
GsuI	CTGGAG	1 cut(s)	123
HaeII	RGCGCY	1 cut(s)	291
HaeIII	GGCC	2 cut(s)	39, 269
HapII	CCGG	2 cut(s)	211, 270
HgaI	GACGC	2 cut(s)	117, 188
HhaI	GCGC	2 cut(s)	290, 304
Hin1I	GRCGYC	2 cut(s)	180, 288
Hin1II	CATG	1 cut(s)	125
Hin6I	GCGC	2 cut(s)	288, 302
HinP1I	GCGC	2 cut(s)	288, 302
HpaII	CCGG	2 cut(s)	211, 270
HphI	GGTGA	3 cut(s)	123, 134, 214
Hpy188I	TCNGA	2 cut(s)	31, 205
HpyAV	CCTTC	4 cut(s)	7, 92, 145, 169
HpyCH4III	ACNGT	1 cut(s)	9
HpyCH4V	TGCA	1 cut(s)	119
HpyF10VI	GCNNNNNNNGC	1 cut(s)	125
HpyF3I	CTNAG	1 cut(s)	255
Hsp92I	GRCGYC	2 cut(s)	180, 288
Hsp92II	CATG	1 cut(s)	125
HspAI	GCGC	2 cut(s)	288, 302
KasI	GGCGCC	1 cut(s)	287
KroI	GCCGGC	1 cut(s)	269
KroNI	GCCGGC	1 cut(s)	271
LmnI	GCTCC	3 cut(s)	153, 205, 213
LweI	GCATC	2 cut(s)	106, 237
MaeIII	GTNAC	2 cut(s)	17, 129
MboII	GAAGA	2 cut(s)	77, 241
MhlI	GDGCHC	1 cut(s)	210
MluCI	AATT	1 cut(s)	239
Mly113I	GGCGCC	1 cut(s)	288
MmeI	TCCRAC	1 cut(s)	54
MnlI	CCTC	3 cut(s)	179, 230, 238
MroNI	GCCGGC	1 cut(s)	269
MspI	CCGG	2 cut(s)	211, 270
MspR9I	CCNGG	2 cut(s)	36, 102
MvaI	CCWGG	2 cut(s)	36, 102
MwoI	GCNNNNNNNGC	1 cut(s)	125
NaeI	GCCGGC	1 cut(s)	271
NarI	GGCGCC	1 cut(s)	288
NgoMIV	GCCGGC	1 cut(s)	269
NlaIII	CATG	1 cut(s)	125
NlaIV	GGNNCC	2 cut(s)	268, 289
NmuCI	GTSAC	1 cut(s)	129
PdiI	GCCGGC	1 cut(s)	271
PfoI	TCCNGGA	1 cut(s)	100
PluTI	GGCGCC	1 cut(s)	291
PpuMI	RGGWCCY	1 cut(s)	166
Psp124BI	GAGCTC	1 cut(s)	210
Psp5II	RGGWCCY	1 cut(s)	166
Psp6I	CCWGG	2 cut(s)	34, 100
PspGI	CCWGG	2 cut(s)	34, 100
PspN4I	GGNNCC	2 cut(s)	268, 289
PspPI	GGNCC	3 cut(s)	38, 166, 267
PspPPI	RGGWCCY	1 cut(s)	166
SacI	GAGCTC	1 cut(s)	210
Sau96I	GGNCC	3 cut(s)	38, 166, 267
ScrFI	CCNGG	2 cut(s)	36, 102
SduI	GDGCHC	1 cut(s)	210
SetI	ASST	7 cut(s)	73, 150, 161, 168, 188, 210, 249
SfaNI	GCATC	2 cut(s)	106, 237
SfoI	GGCGCC	1 cut(s)	289
SinI	GGWCC	1 cut(s)	166
Sse9I	AATT	1 cut(s)	239
SsiI	CCGC	2 cut(s)	76, 151
SspDI	GGCGCC	1 cut(s)	287
SstI	GAGCTC	1 cut(s)	210
StyD4I	CCNGG	2 cut(s)	34, 100
TaaI	ACNGT	1 cut(s)	9
TaqI	TCGA	2 cut(s)	85, 171
TasI	AATT	1 cut(s)	239
TseFI	GTSAC	1 cut(s)	129
Tsp45I	GTSAC	1 cut(s)	129
TspDTI	ATGAA	2 cut(s)	17, 138
TspGWI	ACGGA	1 cut(s)	187
VpaK11BI	GGWCC	1 cut(s)	166
XagI	CCTNNNNNAGG	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.