Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002702

Physical Location & Seq

Genomic Coordinates Reverse (-)

5723395 .. 5726211

Gene Structure 2817 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG069200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGAACCGTGGAAGGGTTTTACTATCACTCTGACCCAGGCCCAATTCAAATCCATAGTCGCCGAGGAGAAGCTAACCGCTCCTTTCGACTTCAAATGCTTCCTGGAGCTGATGGGGATGCACATGAAGCTTGGGCCCTTCAATCGCCAGCTCCACGACGCCTTCAAGGTCCTCGACAAGGACGCCACCAACTTCGTCTCCGTCTCAGAGCTCCGGCACATCCTCACCAGCATCAGCGAGAAATTGGAGGTCTTCCCTAATAAATTTGGGGCCGGCGTCGTTGTTGGTGGCGCCGGAGACGAGTTTGCTGCTCTGCGCGCTCACGACCTTCCTCAAACTCCCCCAGGCAAATACAGCACTCACCATCCATCTGGGTACTGGATATATCAAAGTATCTGCTCGGATCCGACTGTCGCGGCTGTGGATGTGGAGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko03010 ko04626 map03010 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_6 EF-hand_7

Protein Analysis

145

Amino Acids

16.12

Weight (kDa)

5.64

Isoelectric Point (pI)

32.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_6	PF13405	50 - 77	7.7e-06	EF-hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002702)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12310 AT1G62820
fragaria_vesca	FvH4_5g00650 FvH4_7g20700
malus_domestica	MD03G1151100.v1.1 MD04G1079800.v1.1 MD06G1074600.v1.1 MD07G1265800.v1.1 MD11G1152700.v1.1 MD17G1283300.v1.1
prunus_persica	Prupe.5G079300_v2.0.a1
pyrus_communis	pycom06g05340
rosa_chinensis	RchiOBHm_Chr1g0364931 RchiOBHm_Chr3g0455101 RchiOBHm_Chr5g0045151 RchiOBHm_Chr6g0299731 RchiOBHm_Chr7g0201611
rosa_laevigata	RLG00000027458
rosa_multiflora	Rmu_sc0002502.1_g000006 Rmu_sc0002895.1_g000017 Rmu_sc0006410.1_g000028 Rmu_sc0007033.1_g000001 Rmu_sc0011159.1_g000005 Rmu_ssc0000112.1_g000026 Rmu_ssc0000304.1_g000001
rosa_roxburghii	Rroxscaffold_3G00255200 Rroxscaffold_4G00292060
rosa_rugosa	Rorug01G0318600 Rorug07G0065200
rosa_samantha	Rh1BG288500 Rh1CG305200 Rh1DG320100 Rh2CG069200 Rh7AG191700 Rh7BG194000 Rh7DG197000
rosa_wichuraiana	Rw1G029000 Rw5G028070 Rw7G016820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	290
AccBSI	CCGCTC	1 cut(s)	80
AccII	CGCG	2 cut(s)	318, 416
AciI	CCGC	2 cut(s)	78, 416
AclWI	GGATC	2 cut(s)	398, 411
AcsI	RAATTY	1 cut(s)	263
AcyI	GRCGYC	4 cut(s)	159, 183, 276, 291
AfaI	GTAC	1 cut(s)	377
AfiI	CCNNNNNNNGG	2 cut(s)	14, 178
AgsI	TTSAA	4 cut(s)	49, 94, 142, 166
AjnI	CCWGG	3 cut(s)	36, 102, 343
AluBI	AGCT	5 cut(s)	73, 109, 130, 151, 211
AluI	AGCT	5 cut(s)	73, 109, 130, 151, 211
Alw21I	GWGCWC	1 cut(s)	213
Alw26I	GTCTC	3 cut(s)	202, 208, 291
AlwI	GGATC	2 cut(s)	398, 411
AoxI	GGCC	3 cut(s)	39, 134, 270
ApaI	GGGCCC	1 cut(s)	138
ApeKI	GCWGC	1 cut(s)	308
ApoI	RAATTY	1 cut(s)	263
ArsI	GACNNNNNNTTYG	2 cut(s)	42, 74
AspLEI	GCGC	3 cut(s)	293, 318, 320
AspS9I	GGNCC	5 cut(s)	40, 134, 135, 169, 270
AsuHPI	GGTGA	2 cut(s)	217, 353
AvaII	GGWCC	1 cut(s)	169
BaeGI	GKGCMC	1 cut(s)	138
BamHI	GGATCC	1 cut(s)	403
BanI	GGYRCC	1 cut(s)	290
BanII	GRGCYC	2 cut(s)	138, 213
BbsI	GAAGAC	1 cut(s)	244
Bbv12I	GWGCWC	1 cut(s)	213
BbvI	GCAGC	1 cut(s)	295
BccI	CCATC	3 cut(s)	106, 372, 376
BcgI	CGANNNNNNTGC	2 cut(s)	290, 324
BciT130I	CCWGG	3 cut(s)	38, 104, 345
BcoDI	GTCTC	3 cut(s)	202, 208, 291
BfoI	RGCGCY	1 cut(s)	294
BisI	GCNGC	2 cut(s)	309, 417
BlsI	GCNGC	2 cut(s)	310, 418
Bme1390I	CCNGG	3 cut(s)	38, 104, 345
Bme18I	GGWCC	1 cut(s)	169
BmgT120I	GGNCC	5 cut(s)	40, 134, 135, 169, 270
BmiI	GGNNCC	5 cut(s)	6, 136, 271, 292, 405
BmrFI	CCNGG	3 cut(s)	38, 104, 345
BmsI	GCATC	2 cut(s)	108, 240
BpiI	GAAGAC	1 cut(s)	244
BpmI	CTGGAG	1 cut(s)	125
BsaHI	GRCGYC	4 cut(s)	159, 183, 276, 291
BsaJI	CCNNGG	4 cut(s)	8, 36, 63, 343
BsaXI	ACNNNNNCTCC	2 cut(s)	182, 212
Bsc4I	CCNNNNNNNGG	2 cut(s)	14, 178
Bse118I	RCCGGY	1 cut(s)	272
Bse1I	ACTGG	1 cut(s)	383
BseBI	CCWGG	3 cut(s)	38, 104, 345
BseDI	CCNNGG	4 cut(s)	8, 36, 63, 343
BseGI	GGATG	4 cut(s)	123, 219, 364, 430
BseLI	CCNNNNNNNGG	2 cut(s)	14, 178
BseMII	CTCAG	1 cut(s)	219
BseNI	ACTGG	1 cut(s)	383
BsePI	GCGCGC	1 cut(s)	316
BseRI	GAGGAG	1 cut(s)	80
BseSI	GKGCMC	1 cut(s)	138
BseXI	GCAGC	1 cut(s)	295
Bsh1236I	CGCG	2 cut(s)	318, 416
BshFI	GGCC	3 cut(s)	41, 136, 272
BshNI	GGYRCC	1 cut(s)	290
BsiHKAI	GWGCWC	1 cut(s)	213
BsiSI	CCGG	3 cut(s)	214, 273, 294
BslI	CCNNNNNNNGG	2 cut(s)	14, 178
BsmAI	GTCTC	3 cut(s)	202, 208, 291
BsmBI	CGTCTC	3 cut(s)	202, 208, 291
BsnI	GGCC	3 cut(s)	41, 136, 272
Bsp120I	GGGCCC	1 cut(s)	134
Bsp1286I	GDGCHC	2 cut(s)	138, 213
Bsp143I	GATC	1 cut(s)	403
BspACI	CCGC	2 cut(s)	78, 416
BspANI	GGCC	3 cut(s)	41, 136, 272
BspCNI	CTCAG	1 cut(s)	218
BspFNI	CGCG	2 cut(s)	318, 416
BspLI	GGNNCC	5 cut(s)	6, 136, 271, 292, 405
BspPI	GGATC	2 cut(s)	398, 411
BspT107I	GGYRCC	1 cut(s)	290
BsrBI	CCGCTC	1 cut(s)	80
BsrFI	RCCGGY	1 cut(s)	272
BsrI	ACTGG	1 cut(s)	383
BssAI	RCCGGY	1 cut(s)	272
BssECI	CCNNGG	4 cut(s)	8, 36, 63, 343
BssHII	GCGCGC	1 cut(s)	316
BssMI	GATC	1 cut(s)	403
BssNI	GRCGYC	4 cut(s)	159, 183, 276, 291
Bst2UI	CCWGG	3 cut(s)	38, 104, 345
Bst4CI	ACNGT	2 cut(s)	9, 412
BstACI	GRCGYC	4 cut(s)	159, 183, 276, 291
BstC8I	GCNNGC	3 cut(s)	149, 274, 318
BstDEI	CTNAG	1 cut(s)	205
BstDSI	CCRYGG	1 cut(s)	8
BstENI	CCTNNNNNAGG	1 cut(s)	176
BstF5I	GGATG	4 cut(s)	123, 219, 364, 430
BstFNI	CGCG	2 cut(s)	318, 416
BstH2I	RGCGCY	1 cut(s)	294
BstHHI	GCGC	3 cut(s)	293, 318, 320
BstKTI	GATC	1 cut(s)	406
BstMAI	GTCTC	3 cut(s)	202, 208, 291
BstMBI	GATC	1 cut(s)	403
BstMWI	GCNNNNNNNGC	3 cut(s)	127, 317, 354
BstNI	CCWGG	3 cut(s)	38, 104, 345
BstSCI	CCNGG	3 cut(s)	36, 102, 343
BstSLI	GKGCMC	1 cut(s)	138
BstUI	CGCG	2 cut(s)	318, 416
BstV1I	GCAGC	1 cut(s)	295
BstV2I	GAAGAC	1 cut(s)	244
BstX2I	RGATCY	1 cut(s)	403
BstXI	CCANNNNNNTGG	1 cut(s)	371
BstYI	RGATCY	1 cut(s)	403
BsuRI	GGCC	3 cut(s)	41, 136, 272
BtgI	CCRYGG	1 cut(s)	8
BtsCI	GGATG	4 cut(s)	123, 219, 364, 430
Cac8I	GCNNGC	3 cut(s)	149, 274, 318
CfoI	GCGC	3 cut(s)	293, 318, 320
Cfr10I	RCCGGY	1 cut(s)	272
Cfr13I	GGNCC	5 cut(s)	40, 134, 135, 169, 270
CseI	GACGC	3 cut(s)	167, 191, 265
Csp6I	GTAC	1 cut(s)	376
CviAII	CATG	1 cut(s)	124
CviJI	RGCY	9 cut(s)	41, 73, 109, 130, 136, 151, 211, 272, 419
CviKI_1	RGCY	9 cut(s)	41, 73, 109, 130, 136, 151, 211, 272, 419
CviQI	GTAC	1 cut(s)	376
DdeI	CTNAG	1 cut(s)	205
DinI	GGCGCC	1 cut(s)	292
DpnI	GATC	1 cut(s)	405
DpnII	GATC	1 cut(s)	403
Ecl136II	GAGCTC	1 cut(s)	211
Eco24I	GRGCYC	2 cut(s)	138, 213
Eco47I	GGWCC	1 cut(s)	169
Eco53kI	GAGCTC	1 cut(s)	211
EcoICRI	GAGCTC	1 cut(s)	211
EcoNI	CCTNNNNNAGG	1 cut(s)	176
EcoO109I	RGGNCCY	2 cut(s)	135, 169
EcoRII	CCWGG	3 cut(s)	36, 102, 343
EcoT38I	GRGCYC	2 cut(s)	138, 213
EgeI	GGCGCC	1 cut(s)	292
EheI	GGCGCC	1 cut(s)	292
Esp3I	CGTCTC	3 cut(s)	202, 208, 291
FaeI	CATG	1 cut(s)	127
FaiI	YATR	3 cut(s)	56, 125, 385
FatI	CATG	1 cut(s)	123
Fnu4HI	GCNGC	2 cut(s)	309, 417
FokI	GGATG	3 cut(s)	130, 206, 351
FriOI	GRGCYC	2 cut(s)	138, 213
Fsp4HI	GCNGC	2 cut(s)	309, 417
GlaI	GCGC	3 cut(s)	292, 317, 319
GluI	GCNGC	2 cut(s)	309, 417
GsuI	CTGGAG	1 cut(s)	125
HaeII	RGCGCY	1 cut(s)	294
HaeIII	GGCC	3 cut(s)	41, 136, 272
HapII	CCGG	3 cut(s)	214, 273, 294
HgaI	GACGC	3 cut(s)	167, 191, 265
HhaI	GCGC	3 cut(s)	293, 318, 320
Hin1I	GRCGYC	4 cut(s)	159, 183, 276, 291
Hin1II	CATG	1 cut(s)	127
Hin6I	GCGC	3 cut(s)	291, 316, 318
HinP1I	GCGC	3 cut(s)	291, 316, 318
HindIII	AAGCTT	1 cut(s)	128
HpaII	CCGG	3 cut(s)	214, 273, 294
HphI	GGTGA	2 cut(s)	217, 353
Hpy188I	TCNGA	4 cut(s)	33, 208, 403, 408
Hpy188III	TCNNGA	1 cut(s)	323
Hpy99I	CGWCG	2 cut(s)	161, 281
HpyAV	CCTTC	4 cut(s)	7, 148, 172, 338
HpyCH4III	ACNGT	2 cut(s)	9, 412
HpyCH4V	TGCA	1 cut(s)	121
HpyF10VI	GCNNNNNNNGC	3 cut(s)	127, 317, 354
HpyF3I	CTNAG	1 cut(s)	205
Hsp92I	GRCGYC	4 cut(s)	159, 183, 276, 291
Hsp92II	CATG	1 cut(s)	127
HspAI	GCGC	3 cut(s)	291, 316, 318
KasI	GGCGCC	1 cut(s)	290
KroI	GCCGGC	1 cut(s)	272
KroNI	GCCGGC	1 cut(s)	274
Kzo9I	GATC	1 cut(s)	403
LmnI	GCTCC	4 cut(s)	85, 106, 156, 216
Lsp1109I	GCAGC	1 cut(s)	295
LweI	GCATC	2 cut(s)	108, 240
MalI	GATC	1 cut(s)	405
MbiI	CCGCTC	1 cut(s)	80
MboI	GATC	1 cut(s)	403
MboII	GAAGA	1 cut(s)	244
MflI	RGATCY	1 cut(s)	403
MhlI	GDGCHC	2 cut(s)	138, 213
MluCI	AATT	3 cut(s)	44, 242, 263
Mly113I	GGCGCC	1 cut(s)	291
MmeI	TCCRAC	1 cut(s)	431
MnlI	CCTC	6 cut(s)	58, 182, 233, 241, 342, 424
MroNI	GCCGGC	1 cut(s)	272
MspI	CCGG	3 cut(s)	214, 273, 294
MspR9I	CCNGG	3 cut(s)	38, 104, 345
MvaI	CCWGG	3 cut(s)	38, 104, 345
MvnI	CGCG	2 cut(s)	318, 416
MwoI	GCNNNNNNNGC	3 cut(s)	127, 317, 354
NaeI	GCCGGC	1 cut(s)	274
NarI	GGCGCC	1 cut(s)	291
NdeII	GATC	1 cut(s)	403
NgoMIV	GCCGGC	1 cut(s)	272
NlaIII	CATG	1 cut(s)	127
NlaIV	GGNNCC	5 cut(s)	6, 136, 271, 292, 405
NmeAIII	GCCGAG	1 cut(s)	88
PauI	GCGCGC	1 cut(s)	316
PdiI	GCCGGC	1 cut(s)	274
PfoI	TCCNGGA	1 cut(s)	102
PkrI	GCNGC	2 cut(s)	310, 418
PluTI	GGCGCC	1 cut(s)	294
PpuMI	RGGWCCY	1 cut(s)	169
Psp124BI	GAGCTC	1 cut(s)	213
Psp5II	RGGWCCY	1 cut(s)	169
Psp6I	CCWGG	3 cut(s)	36, 102, 343
PspGI	CCWGG	3 cut(s)	36, 102, 343
PspN4I	GGNNCC	5 cut(s)	6, 136, 271, 292, 405
PspOMI	GGGCCC	1 cut(s)	134
PspPI	GGNCC	5 cut(s)	40, 134, 135, 169, 270
PspPPI	RGGWCCY	1 cut(s)	169
PsuI	RGATCY	1 cut(s)	403
PteI	GCGCGC	1 cut(s)	316
RsaI	GTAC	1 cut(s)	377
RsaNI	GTAC	1 cut(s)	376
SacI	GAGCTC	1 cut(s)	213
SatI	GCNGC	2 cut(s)	309, 417
Sau3AI	GATC	1 cut(s)	403
Sau96I	GGNCC	5 cut(s)	40, 134, 135, 169, 270
ScrFI	CCNGG	3 cut(s)	38, 104, 345
SduI	GDGCHC	2 cut(s)	138, 213
SetI	ASST	8 cut(s)	75, 111, 132, 153, 171, 213, 252, 330
SfaNI	GCATC	2 cut(s)	108, 240
SfoI	GGCGCC	1 cut(s)	292
SinI	GGWCC	1 cut(s)	169
Sse9I	AATT	3 cut(s)	44, 242, 263
SsiI	CCGC	2 cut(s)	78, 416
SspDI	GGCGCC	1 cut(s)	290
SstI	GAGCTC	1 cut(s)	213
StyD4I	CCNGG	3 cut(s)	36, 102, 343
TaaI	ACNGT	2 cut(s)	9, 412
TaqI	TCGA	2 cut(s)	87, 174
TasI	AATT	3 cut(s)	44, 242, 263
TauI	GCSGC	1 cut(s)	419
TseI	GCWGC	1 cut(s)	308
TspDTI	ATGAA	1 cut(s)	140
TspGWI	ACGGA	1 cut(s)	190
VpaK11BI	GGWCC	1 cut(s)	169
XagI	CCTNNNNNAGG	1 cut(s)	176
XapI	RAATTY	1 cut(s)	263
XcmI	CCANNNNNNNNNTGG	1 cut(s)	375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.