Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0002702

Physical Location & Seq

Genomic Coordinates Reverse (-)

9333646 .. 9334757

Gene Structure 1112 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G079300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGGCAAGGATCTGAGCGACGACCAAGTATCGTCAATGAAGGAGGCATTCACTCTCTTCGACACCGACAACGACGGCAAGATCGCTCCTTCGGAACTGGGGATCCTAATGCGATCGCTCGGAGGCAACCCGACCCAGGCCCAACTCAAATCCATAGTCGCCGAGGAGAATCTCACGGCCCCCTTCGACTTCCCTCGCTTCCTCGCCCTCATGGGCAAGCACATGAAGCCCGAGCCCTTCGATCGCCAGCTCCGCGACGCCTTCAAGGTCCTCGACAAGGACTCCACCGGCTTCGTCTCGGTCTCGGAGCTCCGGCATATCCTCACCAGCATCGGCGAGAAATTGGAACCATCCGAGTTCGACGAGTGGATCCGGGAGGTCGATGTCGGGTCCGATGGGAAGATCAAATACGAGGACTTCATTGCCAGAATGGTGGCCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko03010 ko04626 map03010 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_6 EF-hand_7

Protein Analysis

148

Amino Acids

16.49

Weight (kDa)

4.79

Isoelectric Point (pI)

32.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002702)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12310 AT1G62820
fragaria_vesca	FvH4_5g00650 FvH4_7g20700
malus_domestica	MD03G1151100.v1.1 MD04G1079800.v1.1 MD06G1074600.v1.1 MD07G1265800.v1.1 MD11G1152700.v1.1 MD17G1283300.v1.1
prunus_persica	Prupe.5G079300_v2.0.a1
pyrus_communis	pycom06g05340
rosa_chinensis	RchiOBHm_Chr1g0364931 RchiOBHm_Chr3g0455101 RchiOBHm_Chr5g0045151 RchiOBHm_Chr6g0299731 RchiOBHm_Chr7g0201611
rosa_laevigata	RLG00000027458
rosa_multiflora	Rmu_sc0002502.1_g000006 Rmu_sc0002895.1_g000017 Rmu_sc0006410.1_g000028 Rmu_sc0007033.1_g000001 Rmu_sc0011159.1_g000005 Rmu_ssc0000112.1_g000026 Rmu_ssc0000304.1_g000001
rosa_roxburghii	Rroxscaffold_3G00255200 Rroxscaffold_4G00292060
rosa_rugosa	Rorug01G0318600 Rorug07G0065200
rosa_samantha	Rh1BG288500 Rh1CG305200 Rh1DG320100 Rh2CG069200 Rh7AG191700 Rh7BG194000 Rh7DG197000
rosa_wichuraiana	Rw1G029000 Rw5G028070 Rw7G016820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	255
AciI	CCGC	1 cut(s)	253
AclWI	GGATC	5 cut(s)	18, 97, 110, 364, 377
AcoI	YGGCCR	1 cut(s)	435
AcyI	GRCGYC	1 cut(s)	258
AfiI	CCNNNNNNNGG	2 cut(s)	136, 277
AgsI	TTSAA	1 cut(s)	265
AjnI	CCWGG	1 cut(s)	135
AloI	GAACNNNNNNTCC	2 cut(s)	87, 119
AluBI	AGCT	2 cut(s)	250, 310
AluI	AGCT	2 cut(s)	250, 310
Alw21I	GWGCWC	1 cut(s)	312
Alw26I	GTCTC	2 cut(s)	301, 307
AlwI	GGATC	5 cut(s)	18, 97, 110, 364, 377
Ama87I	CYCGRG	1 cut(s)	230
AoxI	GGCC	3 cut(s)	138, 177, 435
ArsI	GACNNNNNNTTYG	2 cut(s)	141, 173
AsiSI	GCGATCGC	1 cut(s)	116
AspS9I	GGNCC	4 cut(s)	139, 178, 268, 390
AsuC2I	CCSGG	1 cut(s)	374
AsuHPI	GGTGA	1 cut(s)	316
AvaI	CYCGRG	1 cut(s)	230
AvaII	GGWCC	2 cut(s)	268, 390
BalI	TGGCCA	1 cut(s)	437
BamHI	GGATCC	2 cut(s)	102, 369
BanII	GRGCYC	2 cut(s)	237, 312
BarI	GAAGNNNNNNTAC	2 cut(s)	392, 424
Bbv12I	GWGCWC	1 cut(s)	312
BccI	CCATC	2 cut(s)	358, 389
BceAI	ACGGC	2 cut(s)	91, 192
BciT130I	CCWGG	1 cut(s)	137
BcnI	CCSGG	1 cut(s)	374
BcoDI	GTCTC	2 cut(s)	301, 307
Bme1390I	CCNGG	2 cut(s)	137, 374
Bme18I	GGWCC	2 cut(s)	268, 390
BmeT110I	CYCGRG	1 cut(s)	230
BmgT120I	GGNCC	4 cut(s)	139, 178, 268, 390
BmiI	GGNNCC	5 cut(s)	104, 180, 348, 371, 391
BmrFI	CCNGG	2 cut(s)	137, 374
BmrI	ACTGGG	1 cut(s)	107
BmsI	GCATC	1 cut(s)	339
BmuI	ACTGGG	1 cut(s)	107
BpuMI	CCSGG	1 cut(s)	374
BsaHI	GRCGYC	1 cut(s)	258
BsaI	GGTCTC	1 cut(s)	307
BsaJI	CCNNGG	2 cut(s)	135, 162
BsaXI	ACNNNNNCTCC	2 cut(s)	266, 296
Bsc4I	CCNNNNNNNGG	2 cut(s)	136, 277
Bse118I	RCCGGY	1 cut(s)	287
Bse1I	ACTGG	1 cut(s)	102
Bse3DI	GCAATG	1 cut(s)	420
BseBI	CCWGG	1 cut(s)	137
BseDI	CCNNGG	2 cut(s)	135, 162
BseGI	GGATG	1 cut(s)	350
BseLI	CCNNNNNNNGG	2 cut(s)	136, 277
BseMI	GCAATG	1 cut(s)	420
BseMII	CTCAG	1 cut(s)	5
BseNI	ACTGG	1 cut(s)	102
BseRI	GAGGAG	1 cut(s)	179
Bsh1236I	CGCG	1 cut(s)	255
Bsh1285I	CGRYCG	2 cut(s)	116, 244
BshFI	GGCC	3 cut(s)	140, 179, 437
BsiEI	CGRYCG	2 cut(s)	116, 244
BsiHKAI	GWGCWC	1 cut(s)	312
BsiHKCI	CYCGRG	1 cut(s)	230
BsiSI	CCGG	3 cut(s)	288, 313, 373
BslI	CCNNNNNNNGG	2 cut(s)	136, 277
BsmAI	GTCTC	2 cut(s)	301, 307
BsmBI	CGTCTC	1 cut(s)	301
BsmI	GAATGC	1 cut(s)	47
BsnI	GGCC	3 cut(s)	140, 179, 437
Bso31I	GGTCTC	1 cut(s)	307
BsoBI	CYCGRG	1 cut(s)	230
Bsp1286I	GDGCHC	2 cut(s)	237, 312
Bsp143I	GATC	7 cut(s)	10, 81, 102, 113, 241, 369, 402
BspACI	CCGC	1 cut(s)	253
BspANI	GGCC	3 cut(s)	140, 179, 437
BspCNI	CTCAG	1 cut(s)	6
BspFNI	CGCG	1 cut(s)	255
BspLI	GGNNCC	5 cut(s)	104, 180, 348, 371, 391
BspPI	GGATC	5 cut(s)	18, 97, 110, 364, 377
BspTNI	GGTCTC	1 cut(s)	307
BsrDI	GCAATG	1 cut(s)	420
BsrFI	RCCGGY	1 cut(s)	287
BsrI	ACTGG	1 cut(s)	102
BssAI	RCCGGY	1 cut(s)	287
BssECI	CCNNGG	2 cut(s)	135, 162
BssMI	GATC	7 cut(s)	10, 81, 102, 113, 241, 369, 402
BssNI	GRCGYC	1 cut(s)	258
Bst2UI	CCWGG	1 cut(s)	137
Bst6I	CTCTTC	1 cut(s)	62
BstACI	GRCGYC	1 cut(s)	258
BstC8I	GCNNGC	2 cut(s)	218, 248
BstDEI	CTNAG	1 cut(s)	14
BstENI	CCTNNNNNAGG	1 cut(s)	275
BstF5I	GGATG	1 cut(s)	350
BstFNI	CGCG	1 cut(s)	255
BstKTI	GATC	7 cut(s)	13, 84, 105, 116, 244, 372, 405
BstMAI	GTCTC	2 cut(s)	301, 307
BstMBI	GATC	7 cut(s)	10, 81, 102, 113, 241, 369, 402
BstMCI	CGRYCG	2 cut(s)	116, 244
BstMWI	GCNNNNNNNGC	2 cut(s)	226, 252
BstNI	CCWGG	1 cut(s)	137
BstSCI	CCNGG	2 cut(s)	135, 372
BstUI	CGCG	1 cut(s)	255
BstX2I	RGATCY	3 cut(s)	10, 102, 369
BstXI	CCANNNNNNTGG	1 cut(s)	433
BstYI	RGATCY	3 cut(s)	10, 102, 369
BsuRI	GGCC	3 cut(s)	140, 179, 437
BtsCI	GGATG	1 cut(s)	350
Cac8I	GCNNGC	2 cut(s)	218, 248
Cfr10I	RCCGGY	1 cut(s)	287
Cfr13I	GGNCC	4 cut(s)	139, 178, 268, 390
CseI	GACGC	1 cut(s)	266
CviAII	CATG	2 cut(s)	211, 223
CviJI	RGCY	8 cut(s)	140, 179, 229, 235, 250, 291, 310, 437
CviKI_1	RGCY	8 cut(s)	140, 179, 229, 235, 250, 291, 310, 437
DdeI	CTNAG	1 cut(s)	14
DpnI	GATC	7 cut(s)	12, 83, 104, 115, 243, 371, 404
DpnII	GATC	7 cut(s)	10, 81, 102, 113, 241, 369, 402
EaeI	YGGCCR	1 cut(s)	435
Eam1104I	CTCTTC	1 cut(s)	62
EarI	CTCTTC	1 cut(s)	62
Ecl136II	GAGCTC	1 cut(s)	310
Eco24I	GRGCYC	2 cut(s)	237, 312
Eco31I	GGTCTC	1 cut(s)	307
Eco47I	GGWCC	2 cut(s)	268, 390
Eco53kI	GAGCTC	1 cut(s)	310
Eco88I	CYCGRG	1 cut(s)	230
EcoICRI	GAGCTC	1 cut(s)	310
EcoNI	CCTNNNNNAGG	1 cut(s)	275
EcoO109I	RGGNCCY	1 cut(s)	268
EcoRII	CCWGG	1 cut(s)	135
EcoT38I	GRGCYC	2 cut(s)	237, 312
Esp3I	CGTCTC	1 cut(s)	301
FaeI	CATG	2 cut(s)	214, 226
FaiI	YATR	4 cut(s)	155, 212, 224, 318
FatI	CATG	2 cut(s)	210, 222
FokI	GGATG	1 cut(s)	337
FriOI	GRGCYC	2 cut(s)	237, 312
HaeIII	GGCC	3 cut(s)	140, 179, 437
HapII	CCGG	3 cut(s)	288, 313, 373
HgaI	GACGC	1 cut(s)	266
Hin1I	GRCGYC	1 cut(s)	258
Hin1II	CATG	2 cut(s)	214, 226
HinfI	GANTC	2 cut(s)	169, 281
HpaII	CCGG	3 cut(s)	288, 313, 373
HphI	GGTGA	1 cut(s)	316
Hpy188I	TCNGA	6 cut(s)	15, 94, 122, 307, 355, 394
Hpy99I	CGWCG	4 cut(s)	23, 77, 260, 365
HpyAV	CCTTC	5 cut(s)	34, 99, 193, 247, 271
HpyF10VI	GCNNNNNNNGC	2 cut(s)	226, 252
HpyF3I	CTNAG	1 cut(s)	14
Hsp92I	GRCGYC	1 cut(s)	258
Hsp92II	CATG	2 cut(s)	214, 226
Kzo9I	GATC	7 cut(s)	10, 81, 102, 113, 241, 369, 402
LmnI	GCTCC	4 cut(s)	91, 255, 307, 315
LpnPI	CCDG	9 cut(s)	83, 122, 149, 260, 301, 326, 340, 386, 439
LweI	GCATC	1 cut(s)	339
MalI	GATC	7 cut(s)	12, 83, 104, 115, 243, 371, 404
MboI	GATC	7 cut(s)	10, 81, 102, 113, 241, 369, 402
MboII	GAAGA	2 cut(s)	49, 412
MflI	RGATCY	3 cut(s)	10, 102, 369
MhlI	GDGCHC	2 cut(s)	237, 312
MlsI	TGGCCA	1 cut(s)	437
MluCI	AATT	1 cut(s)	341
MluNI	TGGCCA	1 cut(s)	437
MlyI	GAGTC	1 cut(s)	275
Mox20I	TGGCCA	1 cut(s)	437
MscI	TGGCCA	1 cut(s)	437
Msp20I	TGGCCA	1 cut(s)	437
MspI	CCGG	3 cut(s)	288, 313, 373
MspR9I	CCNGG	2 cut(s)	137, 374
Mva1269I	GAATGC	1 cut(s)	47
MvaI	CCWGG	1 cut(s)	137
MvnI	CGCG	1 cut(s)	255
MwoI	GCNNNNNNNGC	2 cut(s)	226, 252
NciI	CCSGG	1 cut(s)	374
NdeII	GATC	7 cut(s)	10, 81, 102, 113, 241, 369, 402
NlaIII	CATG	2 cut(s)	214, 226
NlaIV	GGNNCC	5 cut(s)	104, 180, 348, 371, 391
NmeAIII	GCCGAG	1 cut(s)	187
PctI	GAATGC	1 cut(s)	47
PfeI	GAWTC	1 cut(s)	169
PfoI	TCCNGGA	1 cut(s)	372
Ple19I	CGATCG	2 cut(s)	116, 244
PleI	GAGTC	1 cut(s)	275
PpsI	GAGTC	1 cut(s)	275
PpuMI	RGGWCCY	1 cut(s)	268
Psp124BI	GAGCTC	1 cut(s)	312
Psp5II	RGGWCCY	1 cut(s)	268
Psp6I	CCWGG	1 cut(s)	135
PspGI	CCWGG	1 cut(s)	135
PspN4I	GGNNCC	5 cut(s)	104, 180, 348, 371, 391
PspPI	GGNCC	4 cut(s)	139, 178, 268, 390
PspPPI	RGGWCCY	1 cut(s)	268
PsuI	RGATCY	3 cut(s)	10, 102, 369
PvuI	CGATCG	2 cut(s)	116, 244
RgaI	GCGATCGC	1 cut(s)	116
SacI	GAGCTC	1 cut(s)	312
Sau3AI	GATC	7 cut(s)	10, 81, 102, 113, 241, 369, 402
Sau96I	GGNCC	4 cut(s)	139, 178, 268, 390
SchI	GAGTC	1 cut(s)	275
ScrFI	CCNGG	2 cut(s)	137, 374
SduI	GDGCHC	2 cut(s)	237, 312
SetI	ASST	4 cut(s)	252, 270, 312, 381
SfaAI	GCGATCGC	1 cut(s)	116
SfaNI	GCATC	1 cut(s)	339
SgfI	GCGATCGC	1 cut(s)	116
SinI	GGWCC	2 cut(s)	268, 390
Sse9I	AATT	1 cut(s)	341
SsiI	CCGC	1 cut(s)	253
SstI	GAGCTC	1 cut(s)	312
StyD4I	CCNGG	2 cut(s)	135, 372
TaqI	TCGA	6 cut(s)	60, 186, 240, 273, 360, 381
TaqII	GACCGA	1 cut(s)	289
TasI	AATT	1 cut(s)	341
TfiI	GAWTC	1 cut(s)	169
TspDTI	ATGAA	3 cut(s)	53, 239, 409
VpaK11BI	GGWCC	2 cut(s)	268, 390
XagI	CCTNNNNNAGG	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.