Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002895.1

Orthogroup ID

OG0002702

Physical Location & Seq

Genomic Coordinates Forward (+)

77758 .. 78084

Gene Structure 327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002895.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

atggaatcgtggaagggttactatcactccgaccgaggcccaactcaaatccatagtcgccaaggagaagttgaccgcccccttcgacttcaaacgcttcctggagttgatggggatgcacatgaagcctcacccttcaatcgccagctccgctacgccttcaaggtcctcgacaaggacgccaccgacttcgtctccgtctcagagctctggcacatcctcaccagcatctgcaagaaattggaggtcttccctaataactttggggctggcgtcgttgttggtggggccggagacgagtttgccgatagaaatgcgctgccgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_6 EF-hand_7

Protein Analysis

108

Amino Acids

12.05

Weight (kDa)

5.73

Isoelectric Point (pI)

37.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002702)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12310 AT1G62820
fragaria_vesca	FvH4_5g00650 FvH4_7g20700
malus_domestica	MD03G1151100.v1.1 MD04G1079800.v1.1 MD06G1074600.v1.1 MD07G1265800.v1.1 MD11G1152700.v1.1 MD17G1283300.v1.1
prunus_persica	Prupe.5G079300_v2.0.a1
pyrus_communis	pycom06g05340
rosa_chinensis	RchiOBHm_Chr1g0364931 RchiOBHm_Chr3g0455101 RchiOBHm_Chr5g0045151 RchiOBHm_Chr6g0299731 RchiOBHm_Chr7g0201611
rosa_laevigata	RLG00000027458
rosa_multiflora	Rmu_sc0002502.1_g000006 Rmu_sc0002895.1_g000017 Rmu_sc0006410.1_g000028 Rmu_sc0007033.1_g000001 Rmu_sc0011159.1_g000005 Rmu_ssc0000112.1_g000026 Rmu_ssc0000304.1_g000001
rosa_roxburghii	Rroxscaffold_3G00255200 Rroxscaffold_4G00292060
rosa_rugosa	Rorug01G0318600 Rorug07G0065200
rosa_samantha	Rh1BG288500 Rh1CG305200 Rh1DG320100 Rh2CG069200 Rh7AG191700 Rh7BG194000 Rh7DG197000
rosa_wichuraiana	Rw1G029000 Rw5G028070 Rw7G016820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	76, 151
AcyI	GRCGYC	2 cut(s)	180, 273
AfiI	CCNNNNNNNGG	1 cut(s)	175
AgsI	TTSAA	3 cut(s)	92, 139, 163
AjnI	CCWGG	1 cut(s)	100
AluBI	AGCT	2 cut(s)	148, 208
AluI	AGCT	2 cut(s)	148, 208
Alw21I	GWGCWC	1 cut(s)	210
Alw26I	GTCTC	3 cut(s)	199, 205, 288
AlwNI	CAGNNNCTG	1 cut(s)	231
AoxI	GGCC	2 cut(s)	37, 288
ApeKI	GCWGC	1 cut(s)	319
ArsI	GACNNNNNNTTYG	2 cut(s)	40, 72
AspLEI	GCGC	1 cut(s)	319
AspS9I	GGNCC	3 cut(s)	38, 166, 288
AsuHPI	GGTGA	2 cut(s)	123, 214
AvaII	GGWCC	1 cut(s)	166
BanII	GRGCYC	1 cut(s)	210
BbsI	GAAGAC	1 cut(s)	241
Bbv12I	GWGCWC	1 cut(s)	210
BbvI	GCAGC	1 cut(s)	306
BccI	CCATC	1 cut(s)	104
BceAI	ACGGC	1 cut(s)	307
BcgI	CGANNNNNNTGC	1 cut(s)	296
BciT130I	CCWGG	1 cut(s)	102
BcoDI	GTCTC	3 cut(s)	199, 205, 288
BisI	GCNGC	1 cut(s)	320
BlsI	GCNGC	1 cut(s)	321
Bme1390I	CCNGG	1 cut(s)	102
Bme18I	GGWCC	1 cut(s)	166
BmgT120I	GGNCC	3 cut(s)	38, 166, 288
BmiI	GGNNCC	1 cut(s)	289
BmrFI	CCNGG	1 cut(s)	102
BmsI	GCATC	2 cut(s)	106, 237
BpiI	GAAGAC	1 cut(s)	241
BpmI	CTGGAG	1 cut(s)	123
BsaHI	GRCGYC	2 cut(s)	180, 273
BsaJI	CCNNGG	2 cut(s)	34, 61
BsaXI	ACNNNNNCTCC	4 cut(s)	11, 41, 179, 209
Bsc4I	CCNNNNNNNGG	1 cut(s)	175
BseBI	CCWGG	1 cut(s)	102
BseDI	CCNNGG	2 cut(s)	34, 61
BseGI	GGATG	2 cut(s)	121, 216
BseLI	CCNNNNNNNGG	1 cut(s)	175
BseMII	CTCAG	1 cut(s)	216
BseXI	GCAGC	1 cut(s)	306
Bsh1285I	CGRYCG	1 cut(s)	34
BshFI	GGCC	2 cut(s)	39, 290
BsiEI	CGRYCG	1 cut(s)	34
BsiHKAI	GWGCWC	1 cut(s)	210
BsiSI	CCGG	1 cut(s)	291
BslI	CCNNNNNNNGG	1 cut(s)	175
BsmAI	GTCTC	3 cut(s)	199, 205, 288
BsmBI	CGTCTC	3 cut(s)	199, 205, 288
BsnI	GGCC	2 cut(s)	39, 290
Bsp1286I	GDGCHC	1 cut(s)	210
BspACI	CCGC	2 cut(s)	76, 151
BspANI	GGCC	2 cut(s)	39, 290
BspCNI	CTCAG	1 cut(s)	215
BspLI	GGNNCC	1 cut(s)	289
BssECI	CCNNGG	2 cut(s)	34, 61
BssNI	GRCGYC	2 cut(s)	180, 273
BssT1I	CCWWGG	1 cut(s)	61
Bst2UI	CCWGG	1 cut(s)	102
BstACI	GRCGYC	2 cut(s)	180, 273
BstC8I	GCNNGC	2 cut(s)	146, 271
BstDEI	CTNAG	1 cut(s)	202
BstENI	CCTNNNNNAGG	1 cut(s)	173
BstF5I	GGATG	2 cut(s)	121, 216
BstHHI	GCGC	1 cut(s)	319
BstMAI	GTCTC	3 cut(s)	199, 205, 288
BstMCI	CGRYCG	1 cut(s)	34
BstMWI	GCNNNNNNNGC	2 cut(s)	125, 150
BstNI	CCWGG	1 cut(s)	102
BstSCI	CCNGG	1 cut(s)	100
BstV1I	GCAGC	1 cut(s)	306
BstV2I	GAAGAC	1 cut(s)	241
BsuRI	GGCC	2 cut(s)	39, 290
BtsCI	GGATG	2 cut(s)	121, 216
Cac8I	GCNNGC	2 cut(s)	146, 271
CaiI	CAGNNNCTG	1 cut(s)	231
CfoI	GCGC	1 cut(s)	319
Cfr13I	GGNCC	3 cut(s)	38, 166, 288
CseI	GACGC	2 cut(s)	188, 262
CviAII	CATG	1 cut(s)	122
CviJI	RGCY	6 cut(s)	39, 128, 148, 208, 269, 290
CviKI_1	RGCY	6 cut(s)	39, 128, 148, 208, 269, 290
DdeI	CTNAG	1 cut(s)	202
Ecl136II	GAGCTC	1 cut(s)	208
Eco130I	CCWWGG	1 cut(s)	61
Eco24I	GRGCYC	1 cut(s)	210
Eco47I	GGWCC	1 cut(s)	166
Eco53kI	GAGCTC	1 cut(s)	208
EcoICRI	GAGCTC	1 cut(s)	208
EcoNI	CCTNNNNNAGG	1 cut(s)	173
EcoO109I	RGGNCCY	1 cut(s)	166
EcoRII	CCWGG	1 cut(s)	100
EcoT14I	CCWWGG	1 cut(s)	61
EcoT38I	GRGCYC	1 cut(s)	210
ErhI	CCWWGG	1 cut(s)	61
Esp3I	CGTCTC	3 cut(s)	199, 205, 288
FaeI	CATG	1 cut(s)	125
FaiI	YATR	2 cut(s)	54, 123
FatI	CATG	1 cut(s)	121
Fnu4HI	GCNGC	1 cut(s)	320
FokI	GGATG	2 cut(s)	128, 203
FriOI	GRGCYC	1 cut(s)	210
Fsp4HI	GCNGC	1 cut(s)	320
GlaI	GCGC	1 cut(s)	318
GluI	GCNGC	1 cut(s)	320
GsuI	CTGGAG	1 cut(s)	123
HaeIII	GGCC	2 cut(s)	39, 290
HapII	CCGG	1 cut(s)	291
HgaI	GACGC	2 cut(s)	188, 262
HhaI	GCGC	1 cut(s)	319
Hin1I	GRCGYC	2 cut(s)	180, 273
Hin1II	CATG	1 cut(s)	125
Hin6I	GCGC	1 cut(s)	317
HinP1I	GCGC	1 cut(s)	317
HincII	GTYRAC	1 cut(s)	73
HindII	GTYRAC	1 cut(s)	73
HinfI	GANTC	1 cut(s)	5
HpaII	CCGG	1 cut(s)	291
HphI	GGTGA	2 cut(s)	123, 214
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188I	TCNGA	2 cut(s)	31, 205
Hpy8I	GTNNAC	1 cut(s)	73
Hpy99I	CGWCG	1 cut(s)	278
HpyAV	CCTTC	4 cut(s)	7, 92, 145, 169
HpyCH4V	TGCA	2 cut(s)	119, 234
HpyF10VI	GCNNNNNNNGC	2 cut(s)	125, 150
HpyF3I	CTNAG	1 cut(s)	202
Hsp92I	GRCGYC	2 cut(s)	180, 273
Hsp92II	CATG	1 cut(s)	125
HspAI	GCGC	1 cut(s)	317
LmnI	GCTCC	1 cut(s)	153
LpnPI	CCDG	7 cut(s)	87, 114, 158, 196, 238, 255, 304
Lsp1109I	GCAGC	1 cut(s)	306
LweI	GCATC	2 cut(s)	106, 237
MaeIII	GTNAC	1 cut(s)	17
MboII	GAAGA	1 cut(s)	241
MhlI	GDGCHC	1 cut(s)	210
MluCI	AATT	1 cut(s)	239
MmeI	TCCRAC	1 cut(s)	54
MnlI	CCTC	5 cut(s)	29, 139, 179, 230, 238
MspI	CCGG	1 cut(s)	291
MspR9I	CCNGG	1 cut(s)	102
MvaI	CCWGG	1 cut(s)	102
MwoI	GCNNNNNNNGC	2 cut(s)	125, 150
NlaIII	CATG	1 cut(s)	125
NlaIV	GGNNCC	1 cut(s)	289
PcsI	WCGNNNNNNNCGW	1 cut(s)	303
PfeI	GAWTC	1 cut(s)	5
PflFI	GACNNNGTC	1 cut(s)	191
PfoI	TCCNGGA	1 cut(s)	100
PkrI	GCNGC	1 cut(s)	321
PpuMI	RGGWCCY	1 cut(s)	166
Psp124BI	GAGCTC	1 cut(s)	210
Psp5II	RGGWCCY	1 cut(s)	166
Psp6I	CCWGG	1 cut(s)	100
PspGI	CCWGG	1 cut(s)	100
PspN4I	GGNNCC	1 cut(s)	289
PspPI	GGNCC	3 cut(s)	38, 166, 288
PspPPI	RGGWCCY	1 cut(s)	166
PstNI	CAGNNNCTG	1 cut(s)	231
PsyI	GACNNNGTC	1 cut(s)	191
SacI	GAGCTC	1 cut(s)	210
SatI	GCNGC	1 cut(s)	320
Sau96I	GGNCC	3 cut(s)	38, 166, 288
ScrFI	CCNGG	1 cut(s)	102
SduI	GDGCHC	1 cut(s)	210
SetI	ASST	4 cut(s)	150, 168, 210, 249
SfaNI	GCATC	2 cut(s)	106, 237
SinI	GGWCC	1 cut(s)	166
Sse9I	AATT	1 cut(s)	239
SsiI	CCGC	2 cut(s)	76, 151
SstI	GAGCTC	1 cut(s)	210
StyD4I	CCNGG	1 cut(s)	100
StyI	CCWWGG	1 cut(s)	61
TaqI	TCGA	2 cut(s)	85, 171
TaqII	GACCGA	1 cut(s)	48
TasI	AATT	1 cut(s)	239
TfiI	GAWTC	1 cut(s)	5
TseI	GCWGC	1 cut(s)	319
TspDTI	ATGAA	1 cut(s)	138
TspGWI	ACGGA	1 cut(s)	187
Tth111I	GACNNNGTC	1 cut(s)	191
VpaK11BI	GGWCC	1 cut(s)	166
XagI	CCTNNNNNAGG	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.