Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002702

Physical Location & Seq

Genomic Coordinates Forward (+)

19162110 .. 19163139

Gene Structure 1030 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ18046

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGGGAAGGATCTGAGCGACGATCAAGTCAACTCGATGAAGGAGGCCTTCACGCTCTTCGACACGGACAACGACGGCAAGATCGCCCCGTCGGAATTGGGGATCCTAATGCGGTCCCTGGGCGGCAACCCGACCCAGGCCCAACTCAAATCCATAGTCGCCGAGGAGAAGCTGACCGCCCCCTTCGACTTCAAACGCTTCCTGGAGCTGATGGGGAAGCACATGAAGCCGGAGCCCTTCGATCGCCAGCTCCGCGACGCCTTCAAGGTCCTGGACAAGGACGCCACCGGCTTCGTCTCCGTCTCGGAGCTCCGGCACATCCTCACCAGCATCGGCGAGAAATTGGAGCCGTCGGAGTTCGACGAGTGGATCCGGGAGGTCGATGTGGGCAAAGATGGCAAGATCAAATACGAGGACTTCATCGCCAGAATGGTCGCCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko03010 ko04626 map03010 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_6 EF-hand_7

Protein Analysis

147

Amino Acids

16.64

Weight (kDa)

5.02

Isoelectric Point (pI)

28.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	12 - 54	2.3e-06	EF-hand domain pair
EF-hand_1	PF00036	13 - 40	3.2e-06	EF hand domain
EF-hand_6	PF13405	13 - 41	5.2e-07	EF-hand domain
EF-hand_7	PF13499	82 - 144	1.5e-16	EF-hand domain pair
EF-hand_6	PF13405	83 - 112	1.4e-07	EF-hand domain
EF-hand_8	PF13833	99 - 145	4.7e-06	EF-hand domain pair

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0002702)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12310 AT1G62820
fragaria_vesca	FvH4_5g00650 FvH4_7g20700
malus_domestica	MD03G1151100.v1.1 MD04G1079800.v1.1 MD06G1074600.v1.1 MD07G1265800.v1.1 MD11G1152700.v1.1 MD17G1283300.v1.1
prunus_persica	Prupe.5G079300_v2.0.a1
pyrus_communis	pycom06g05340
rosa_chinensis	RchiOBHm_Chr1g0364931 RchiOBHm_Chr3g0455101 RchiOBHm_Chr5g0045151 RchiOBHm_Chr6g0299731 RchiOBHm_Chr7g0201611
rosa_laevigata	RLG00000027458
rosa_multiflora	Rmu_sc0002502.1_g000006 Rmu_sc0002895.1_g000017 Rmu_sc0006410.1_g000028 Rmu_sc0007033.1_g000001 Rmu_sc0011159.1_g000005 Rmu_ssc0000112.1_g000026 Rmu_ssc0000304.1_g000001
rosa_roxburghii	Rroxscaffold_3G00255200 Rroxscaffold_4G00292060
rosa_rugosa	Rorug01G0318600 Rorug07G0065200
rosa_samantha	Rh1BG288500 Rh1CG305200 Rh1DG320100 Rh2CG069200 Rh7AG191700 Rh7BG194000 Rh7DG197000
rosa_wichuraiana	Rw1G029000 Rw5G028070 Rw7G016820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	26
AccII	CGCG	1 cut(s)	255
AciI	CCGC	4 cut(s)	112, 123, 177, 253
AclWI	GGATC	5 cut(s)	18, 97, 110, 364, 377
AcyI	GRCGYC	2 cut(s)	258, 282
AfiI	CCNNNNNNNGG	2 cut(s)	136, 277
AgsI	TTSAA	2 cut(s)	193, 265
AjnI	CCWGG	4 cut(s)	117, 135, 201, 270
AluBI	AGCT	4 cut(s)	172, 208, 250, 310
AluI	AGCT	4 cut(s)	172, 208, 250, 310
Alw21I	GWGCWC	1 cut(s)	312
Alw26I	GTCTC	2 cut(s)	301, 307
AlwI	GGATC	5 cut(s)	18, 97, 110, 364, 377
AoxI	GGCC	2 cut(s)	45, 138
ArsI	GACNNNNNNTTYG	2 cut(s)	141, 173
AspS9I	GGNCC	3 cut(s)	114, 139, 268
AsuC2I	CCSGG	1 cut(s)	374
AsuHPI	GGTGA	1 cut(s)	316
AvaII	GGWCC	2 cut(s)	114, 268
BamHI	GGATCC	2 cut(s)	102, 369
BanII	GRGCYC	2 cut(s)	237, 312
Bbv12I	GWGCWC	1 cut(s)	312
BccI	CCATC	2 cut(s)	205, 389
BceAI	ACGGC	2 cut(s)	91, 334
BciT130I	CCWGG	4 cut(s)	119, 137, 203, 272
BcnI	CCSGG	1 cut(s)	374
BcoDI	GTCTC	2 cut(s)	301, 307
BisI	GCNGC	1 cut(s)	124
BlsI	GCNGC	1 cut(s)	125
Bme1390I	CCNGG	5 cut(s)	119, 137, 203, 272, 374
Bme18I	GGWCC	2 cut(s)	114, 268
BmgT120I	GGNCC	3 cut(s)	114, 139, 268
BmiI	GGNNCC	5 cut(s)	104, 116, 234, 348, 371
BmrFI	CCNGG	5 cut(s)	119, 137, 203, 272, 374
BmsI	GCATC	1 cut(s)	339
BpmI	CTGGAG	1 cut(s)	224
BpuMI	CCSGG	1 cut(s)	374
BsaHI	GRCGYC	2 cut(s)	258, 282
BsaJI	CCNNGG	4 cut(s)	117, 118, 135, 162
Bsc4I	CCNNNNNNNGG	2 cut(s)	136, 277
Bse118I	RCCGGY	1 cut(s)	287
BseBI	CCWGG	4 cut(s)	119, 137, 203, 272
BseDI	CCNNGG	4 cut(s)	117, 118, 135, 162
BseGI	GGATG	1 cut(s)	318
BseLI	CCNNNNNNNGG	2 cut(s)	136, 277
BseMII	CTCAG	1 cut(s)	5
BseRI	GAGGAG	1 cut(s)	179
Bsh1236I	CGCG	1 cut(s)	255
Bsh1285I	CGRYCG	1 cut(s)	244
BshFI	GGCC	2 cut(s)	47, 140
BsiEI	CGRYCG	1 cut(s)	244
BsiHKAI	GWGCWC	1 cut(s)	312
BsiSI	CCGG	4 cut(s)	230, 288, 313, 373
BslFI	GGGAC	1 cut(s)	100
BslI	CCNNNNNNNGG	2 cut(s)	136, 277
BsmAI	GTCTC	2 cut(s)	301, 307
BsmBI	CGTCTC	2 cut(s)	301, 307
BsmFI	GGGAC	1 cut(s)	100
BsnI	GGCC	2 cut(s)	47, 140
Bsp1286I	GDGCHC	2 cut(s)	237, 312
Bsp143I	GATC	7 cut(s)	10, 22, 81, 102, 241, 369, 402
BspACI	CCGC	4 cut(s)	112, 123, 177, 253
BspANI	GGCC	2 cut(s)	47, 140
BspCNI	CTCAG	1 cut(s)	6
BspFNI	CGCG	1 cut(s)	255
BspLI	GGNNCC	5 cut(s)	104, 116, 234, 348, 371
BspPI	GGATC	5 cut(s)	18, 97, 110, 364, 377
BspQI	GCTCTTC	1 cut(s)	62
BsrFI	RCCGGY	1 cut(s)	287
BssAI	RCCGGY	1 cut(s)	287
BssECI	CCNNGG	4 cut(s)	117, 118, 135, 162
BssMI	GATC	7 cut(s)	10, 22, 81, 102, 241, 369, 402
BssNI	GRCGYC	2 cut(s)	258, 282
Bst2UI	CCWGG	4 cut(s)	119, 137, 203, 272
Bst6I	CTCTTC	1 cut(s)	62
BstACI	GRCGYC	2 cut(s)	258, 282
BstC8I	GCNNGC	1 cut(s)	248
BstDEI	CTNAG	1 cut(s)	14
BstENI	CCTNNNNNAGG	1 cut(s)	275
BstF5I	GGATG	1 cut(s)	318
BstFNI	CGCG	1 cut(s)	255
BstKTI	GATC	7 cut(s)	13, 25, 84, 105, 244, 372, 405
BstMAI	GTCTC	2 cut(s)	301, 307
BstMBI	GATC	7 cut(s)	10, 22, 81, 102, 241, 369, 402
BstMCI	CGRYCG	1 cut(s)	244
BstMWI	GCNNNNNNNGC	3 cut(s)	226, 252, 396
BstNI	CCWGG	4 cut(s)	119, 137, 203, 272
BstSCI	CCNGG	5 cut(s)	117, 135, 201, 270, 372
BstUI	CGCG	1 cut(s)	255
BstX2I	RGATCY	3 cut(s)	10, 102, 369
BstYI	RGATCY	3 cut(s)	10, 102, 369
BsuRI	GGCC	2 cut(s)	47, 140
BtgZI	GCGATG	1 cut(s)	406
BtsCI	GGATG	1 cut(s)	318
Cac8I	GCNNGC	1 cut(s)	248
Cfr10I	RCCGGY	1 cut(s)	287
Cfr13I	GGNCC	3 cut(s)	114, 139, 268
CseI	GACGC	2 cut(s)	266, 290
CviAII	CATG	1 cut(s)	223
DdeI	CTNAG	1 cut(s)	14
DpnI	GATC	7 cut(s)	12, 24, 83, 104, 243, 371, 404
DpnII	GATC	7 cut(s)	10, 22, 81, 102, 241, 369, 402
DrdI	GACNNNNNNGTC	1 cut(s)	26
DseDI	GACNNNNNNGTC	1 cut(s)	26
Eam1104I	CTCTTC	1 cut(s)	62
EarI	CTCTTC	1 cut(s)	62
Ecl136II	GAGCTC	1 cut(s)	310
Eco147I	AGGCCT	1 cut(s)	47
Eco24I	GRGCYC	2 cut(s)	237, 312
Eco47I	GGWCC	2 cut(s)	114, 268
Eco53kI	GAGCTC	1 cut(s)	310
EcoICRI	GAGCTC	1 cut(s)	310
EcoNI	CCTNNNNNAGG	1 cut(s)	275
EcoO109I	RGGNCCY	1 cut(s)	268
EcoRII	CCWGG	4 cut(s)	117, 135, 201, 270
EcoT38I	GRGCYC	2 cut(s)	237, 312
Esp3I	CGTCTC	2 cut(s)	301, 307
FaeI	CATG	1 cut(s)	226
FaiI	YATR	2 cut(s)	155, 224
FalI	AAGNNNNNCTT	2 cut(s)	32, 64
FaqI	GGGAC	1 cut(s)	100
FatI	CATG	1 cut(s)	222
Fnu4HI	GCNGC	1 cut(s)	124
FokI	GGATG	1 cut(s)	305
FriOI	GRGCYC	2 cut(s)	237, 312
Fsp4HI	GCNGC	1 cut(s)	124
GluI	GCNGC	1 cut(s)	124
GsuI	CTGGAG	1 cut(s)	224
HaeIII	GGCC	2 cut(s)	47, 140
HapII	CCGG	4 cut(s)	230, 288, 313, 373
HgaI	GACGC	2 cut(s)	266, 290
Hin1I	GRCGYC	2 cut(s)	258, 282
Hin1II	CATG	1 cut(s)	226
HincII	GTYRAC	1 cut(s)	31
HindII	GTYRAC	1 cut(s)	31
HpaII	CCGG	4 cut(s)	230, 288, 313, 373
HphI	GGTGA	1 cut(s)	316
Hpy166II	GTNNAC	1 cut(s)	31
Hpy188I	TCNGA	4 cut(s)	15, 94, 307, 355
Hpy8I	GTNNAC	1 cut(s)	31
Hpy99I	CGWCG	6 cut(s)	23, 77, 94, 260, 355, 365
HpyAV	CCTTC	5 cut(s)	34, 58, 193, 247, 271
HpyF10VI	GCNNNNNNNGC	3 cut(s)	226, 252, 396
HpyF3I	CTNAG	1 cut(s)	14
Hsp92I	GRCGYC	2 cut(s)	258, 282
Hsp92II	CATG	1 cut(s)	226
Kzo9I	GATC	7 cut(s)	10, 22, 81, 102, 241, 369, 402
LguI	GCTCTTC	1 cut(s)	62
LmnI	GCTCC	6 cut(s)	205, 232, 255, 307, 315, 346
LweI	GCATC	1 cut(s)	339
MalI	GATC	7 cut(s)	12, 24, 83, 104, 243, 371, 404
MboI	GATC	7 cut(s)	10, 22, 81, 102, 241, 369, 402
MboII	GAAGA	1 cut(s)	49
MflI	RGATCY	3 cut(s)	10, 102, 369
MhlI	GDGCHC	2 cut(s)	237, 312
MluCI	AATT	2 cut(s)	95, 341
MmeI	TCCRAC	2 cut(s)	72, 333
MnlI	CCTC	5 cut(s)	37, 157, 332, 370, 406
MspI	CCGG	4 cut(s)	230, 288, 313, 373
MspR9I	CCNGG	5 cut(s)	119, 137, 203, 272, 374
MvaI	CCWGG	4 cut(s)	119, 137, 203, 272
MvnI	CGCG	1 cut(s)	255
MwoI	GCNNNNNNNGC	3 cut(s)	226, 252, 396
NciI	CCSGG	1 cut(s)	374
NdeII	GATC	7 cut(s)	10, 22, 81, 102, 241, 369, 402
NlaIII	CATG	1 cut(s)	226
NlaIV	GGNNCC	5 cut(s)	104, 116, 234, 348, 371
NmeAIII	GCCGAG	1 cut(s)	187
PasI	CCCWGGG	1 cut(s)	118
PceI	AGGCCT	1 cut(s)	47
PciSI	GCTCTTC	1 cut(s)	62
PfoI	TCCNGGA	3 cut(s)	201, 270, 372
PkrI	GCNGC	1 cut(s)	125
Ple19I	CGATCG	1 cut(s)	244
PpuMI	RGGWCCY	1 cut(s)	268
Psp124BI	GAGCTC	1 cut(s)	312
Psp5II	RGGWCCY	1 cut(s)	268
Psp6I	CCWGG	4 cut(s)	117, 135, 201, 270
PspGI	CCWGG	4 cut(s)	117, 135, 201, 270
PspN4I	GGNNCC	5 cut(s)	104, 116, 234, 348, 371
PspPI	GGNCC	3 cut(s)	114, 139, 268
PspPPI	RGGWCCY	1 cut(s)	268
PsuI	RGATCY	3 cut(s)	10, 102, 369
PvuI	CGATCG	1 cut(s)	244
SacI	GAGCTC	1 cut(s)	312
SapI	GCTCTTC	1 cut(s)	62
SatI	GCNGC	1 cut(s)	124
Sau3AI	GATC	7 cut(s)	10, 22, 81, 102, 241, 369, 402
Sau96I	GGNCC	3 cut(s)	114, 139, 268
ScrFI	CCNGG	5 cut(s)	119, 137, 203, 272, 374
SduI	GDGCHC	2 cut(s)	237, 312
SetI	ASST	6 cut(s)	174, 210, 252, 270, 312, 381
SfaNI	GCATC	1 cut(s)	339
SinI	GGWCC	2 cut(s)	114, 268
Sse9I	AATT	2 cut(s)	95, 341
SseBI	AGGCCT	1 cut(s)	47
SsiI	CCGC	4 cut(s)	112, 123, 177, 253
SstI	GAGCTC	1 cut(s)	312
StuI	AGGCCT	1 cut(s)	47
StyD4I	CCNGG	5 cut(s)	117, 135, 201, 270, 372
TaqI	TCGA	6 cut(s)	35, 60, 186, 240, 360, 381
TasI	AATT	2 cut(s)	95, 341
TauI	GCSGC	1 cut(s)	126
TspDTI	ATGAA	3 cut(s)	53, 239, 409
TspGWI	ACGGA	2 cut(s)	80, 289
VpaK11BI	GGWCC	2 cut(s)	114, 268
XagI	CCTNNNNNAGG	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.