Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002702

Physical Location & Seq

Genomic Coordinates Reverse (-)

4186653 .. 4188233

Gene Structure 1581 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G12310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGGGAAAGATGGTCTGAGCGACGATCAGGTCTCGTCGATGAAGGAAGCCTTCATGCTCTTCGACACCGATGGCGACGGCAAAATCGCACCGTCAGAGCTCGGGATCCTCATGCGATCTCTCGGCGGAAACCCGACCCAAGCCCAGCTGAAATCCATAATCGCATCCGAGAATCTCTCTTCACCGTTTGATTTCAACAGATTCCTCGATCTCATGGCGAAACATCTGAAGACGGAACCTTTCGATCGCCAGCTCCGTGACGCATTCAAAGTGCTCGATAAGGAAGGTACCGGGTTCGTTGCTGTGGCGGATCTGAGGCATATTCTGACCAGTATCGGAGAGAAGCTGGAGCCTAATGAGTTCGATGAGTGGATCAAGGAGGTGGATGTTGGATCCGATGGAAAGATCCGGTATGAAGATTTCATAGCAAGGATGGTTGCTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_6 EF-hand_7

Protein Analysis

148

Amino Acids

16.52

Weight (kDa)

4.78

Isoelectric Point (pI)

28.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	13 - 55	1.2e-06	EF-hand domain pair
EF-hand_6	PF13405	14 - 42	2.4e-07	EF-hand domain
EF-hand_1	PF00036	14 - 41	1.4e-06	EF hand domain
EF-hand_7	PF13499	83 - 145	2.1e-16	EF-hand domain pair
EF-hand_6	PF13405	84 - 113	3.2e-06	EF-hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002702)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12310 AT1G62820
fragaria_vesca	FvH4_5g00650 FvH4_7g20700
malus_domestica	MD03G1151100.v1.1 MD04G1079800.v1.1 MD06G1074600.v1.1 MD07G1265800.v1.1 MD11G1152700.v1.1 MD17G1283300.v1.1
prunus_persica	Prupe.5G079300_v2.0.a1
pyrus_communis	pycom06g05340
rosa_chinensis	RchiOBHm_Chr1g0364931 RchiOBHm_Chr3g0455101 RchiOBHm_Chr5g0045151 RchiOBHm_Chr6g0299731 RchiOBHm_Chr7g0201611
rosa_laevigata	RLG00000027458
rosa_multiflora	Rmu_sc0002502.1_g000006 Rmu_sc0002895.1_g000017 Rmu_sc0006410.1_g000028 Rmu_sc0007033.1_g000001 Rmu_sc0011159.1_g000005 Rmu_ssc0000112.1_g000026 Rmu_ssc0000304.1_g000001
rosa_roxburghii	Rroxscaffold_3G00255200 Rroxscaffold_4G00292060
rosa_rugosa	Rorug01G0318600 Rorug07G0065200
rosa_samantha	Rh1BG288500 Rh1CG305200 Rh1DG320100 Rh2CG069200 Rh7AG191700 Rh7BG194000 Rh7DG197000
rosa_wichuraiana	Rw1G029000 Rw5G028070 Rw7G016820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	29
Acc65I	GGTACC	1 cut(s)	287
AccB1I	GGYRCC	1 cut(s)	287
AciI	CCGC	2 cut(s)	126, 308
AclWI	GGATC	7 cut(s)	100, 113, 318, 380, 387, 400, 400
AcuI	CTGAAG	1 cut(s)	248
AfaI	GTAC	1 cut(s)	289
AgsI	TTSAA	2 cut(s)	196, 268
AluBI	AGCT	4 cut(s)	100, 148, 253, 346
AluI	AGCT	4 cut(s)	100, 148, 253, 346
Alw21I	GWGCWC	2 cut(s)	102, 276
Alw26I	GTCTC	1 cut(s)	37
AlwI	GGATC	7 cut(s)	100, 113, 318, 380, 387, 400, 400
Ama87I	CYCGRG	1 cut(s)	101
Asp718I	GGTACC	1 cut(s)	287
AsuC2I	CCSGG	1 cut(s)	292
AsuHPI	GGTGA	1 cut(s)	174
AvaI	CYCGRG	1 cut(s)	101
BamHI	GGATCC	2 cut(s)	105, 392
BanI	GGYRCC	1 cut(s)	287
BanII	GRGCYC	1 cut(s)	102
BbsI	GAAGAC	1 cut(s)	236
Bbv12I	GWGCWC	2 cut(s)	102, 276
BccI	CCATC	4 cut(s)	5, 65, 392, 427
BceAI	ACGGC	1 cut(s)	94
BcnI	CCSGG	1 cut(s)	292
BcoDI	GTCTC	1 cut(s)	37
Bme1390I	CCNGG	1 cut(s)	292
BmeT110I	CYCGRG	1 cut(s)	101
BmiI	GGNNCC	5 cut(s)	107, 237, 289, 351, 394
BmrFI	CCNGG	1 cut(s)	292
BmsI	GCATC	1 cut(s)	173
BpiI	GAAGAC	1 cut(s)	236
BplI	GAGNNNNNCTC	2 cut(s)	161, 193
BpmI	CTGGAG	1 cut(s)	368
BpuMI	CCSGG	1 cut(s)	292
BsaI	GGTCTC	1 cut(s)	37
BsaWI	WCCGGW	1 cut(s)	408
Bse1I	ACTGG	1 cut(s)	330
BseGI	GGATG	3 cut(s)	164, 391, 438
BseMII	CTCAG	2 cut(s)	8, 305
BseNI	ACTGG	1 cut(s)	330
BseYI	CCCAGC	1 cut(s)	144
Bsh1285I	CGRYCG	1 cut(s)	247
BshNI	GGYRCC	1 cut(s)	287
BsiEI	CGRYCG	1 cut(s)	247
BsiHKAI	GWGCWC	2 cut(s)	102, 276
BsiHKCI	CYCGRG	1 cut(s)	101
BsiSI	CCGG	2 cut(s)	291, 409
BsmAI	GTCTC	1 cut(s)	37
BsmI	GAATGC	1 cut(s)	263
Bso31I	GGTCTC	1 cut(s)	37
BsoBI	CYCGRG	1 cut(s)	101
Bsp1286I	GDGCHC	2 cut(s)	102, 276
Bsp143I	GATC	9 cut(s)	25, 105, 116, 208, 244, 310, 372, 392, 405
BspACI	CCGC	2 cut(s)	126, 308
BspCNI	CTCAG	2 cut(s)	9, 306
BspLI	GGNNCC	5 cut(s)	107, 237, 289, 351, 394
BspPI	GGATC	7 cut(s)	100, 113, 318, 380, 387, 400, 400
BspQI	GCTCTTC	1 cut(s)	65
BspT107I	GGYRCC	1 cut(s)	287
BspTNI	GGTCTC	1 cut(s)	37
BsrI	ACTGG	1 cut(s)	330
BssMI	GATC	9 cut(s)	25, 105, 116, 208, 244, 310, 372, 392, 405
Bst4CI	ACNGT	2 cut(s)	93, 186
Bst6I	CTCTTC	2 cut(s)	65, 184
BstC8I	GCNNGC	1 cut(s)	251
BstDEI	CTNAG	3 cut(s)	17, 314, 441
BstF5I	GGATG	3 cut(s)	164, 391, 438
BstKTI	GATC	9 cut(s)	28, 108, 119, 211, 247, 313, 375, 395, 408
BstMAI	GTCTC	1 cut(s)	37
BstMBI	GATC	9 cut(s)	25, 105, 116, 208, 244, 310, 372, 392, 405
BstMCI	CGRYCG	1 cut(s)	247
BstSCI	CCNGG	1 cut(s)	290
BstV2I	GAAGAC	1 cut(s)	236
BstX2I	RGATCY	4 cut(s)	105, 310, 392, 405
BstYI	RGATCY	4 cut(s)	105, 310, 392, 405
BtsCI	GGATG	3 cut(s)	164, 391, 438
Cac8I	GCNNGC	1 cut(s)	251
CseI	GACGC	1 cut(s)	269
Csp6I	GTAC	1 cut(s)	288
CviAII	CATG	3 cut(s)	55, 112, 214
CviJI	RGCY	7 cut(s)	50, 100, 143, 148, 253, 346, 352
CviKI_1	RGCY	7 cut(s)	50, 100, 143, 148, 253, 346, 352
CviQI	GTAC	1 cut(s)	288
DdeI	CTNAG	3 cut(s)	17, 314, 441
DpnI	GATC	9 cut(s)	27, 107, 118, 210, 246, 312, 374, 394, 407
DpnII	GATC	9 cut(s)	25, 105, 116, 208, 244, 310, 372, 392, 405
DrdI	GACNNNNNNGTC	1 cut(s)	29
DseDI	GACNNNNNNGTC	1 cut(s)	29
Eam1104I	CTCTTC	2 cut(s)	65, 184
EarI	CTCTTC	2 cut(s)	65, 184
EciI	GGCGGA	2 cut(s)	141, 323
Ecl136II	GAGCTC	1 cut(s)	100
Eco24I	GRGCYC	1 cut(s)	102
Eco31I	GGTCTC	1 cut(s)	37
Eco53kI	GAGCTC	1 cut(s)	100
Eco57I	CTGAAG	1 cut(s)	248
Eco88I	CYCGRG	1 cut(s)	101
EcoICRI	GAGCTC	1 cut(s)	100
EcoT38I	GRGCYC	1 cut(s)	102
FaeI	CATG	3 cut(s)	58, 115, 217
FaiI	YATR	7 cut(s)	56, 113, 158, 215, 321, 414, 425
FalI	AAGNNNNNCTT	2 cut(s)	35, 67
FatI	CATG	3 cut(s)	54, 111, 213
FokI	GGATG	2 cut(s)	151, 398
FriOI	GRGCYC	1 cut(s)	102
GsaI	CCCAGC	1 cut(s)	148
GsuI	CTGGAG	1 cut(s)	368
HapII	CCGG	2 cut(s)	291, 409
HgaI	GACGC	1 cut(s)	269
Hin1II	CATG	3 cut(s)	58, 115, 217
HinfI	GANTC	2 cut(s)	172, 201
HpaII	CCGG	2 cut(s)	291, 409
HphI	GGTGA	1 cut(s)	174
Hpy188I	TCNGA	8 cut(s)	18, 97, 169, 228, 315, 327, 338, 397
Hpy188III	TCNNGA	1 cut(s)	103
Hpy99I	CGWCG	3 cut(s)	26, 40, 80
HpyAV	CCTTC	3 cut(s)	37, 61, 278
HpyCH4III	ACNGT	2 cut(s)	93, 186
HpyF3I	CTNAG	3 cut(s)	17, 314, 441
Hsp92II	CATG	3 cut(s)	58, 115, 217
KpnI	GGTACC	1 cut(s)	291
Kzo9I	GATC	9 cut(s)	25, 105, 116, 208, 244, 310, 372, 392, 405
LguI	GCTCTTC	1 cut(s)	65
LmnI	GCTCC	2 cut(s)	258, 349
LpnPI	CCDG	7 cut(s)	14, 158, 263, 304, 332, 343, 422
LweI	GCATC	1 cut(s)	173
MaeIII	GTNAC	1 cut(s)	257
MalI	GATC	9 cut(s)	27, 107, 118, 210, 246, 312, 374, 394, 407
MboI	GATC	9 cut(s)	25, 105, 116, 208, 244, 310, 372, 392, 405
MboII	GAAGA	4 cut(s)	52, 171, 241, 428
MflI	RGATCY	4 cut(s)	105, 310, 392, 405
MhlI	GDGCHC	2 cut(s)	102, 276
MmeI	TCCRAC	1 cut(s)	370
MnlI	CCTC	4 cut(s)	119, 215, 309, 373
MspA1I	CMGCKG	1 cut(s)	148
MspI	CCGG	2 cut(s)	291, 409
MspR9I	CCNGG	1 cut(s)	292
Mva1269I	GAATGC	1 cut(s)	263
NciI	CCSGG	1 cut(s)	292
NdeII	GATC	9 cut(s)	25, 105, 116, 208, 244, 310, 372, 392, 405
NlaIII	CATG	3 cut(s)	58, 115, 217
NlaIV	GGNNCC	5 cut(s)	107, 237, 289, 351, 394
NmeAIII	GCCGAG	1 cut(s)	102
NmuCI	GTSAC	1 cut(s)	257
PciSI	GCTCTTC	1 cut(s)	65
PcsI	WCGNNNNNNNCGW	1 cut(s)	253
PctI	GAATGC	1 cut(s)	263
PfeI	GAWTC	2 cut(s)	172, 201
Ple19I	CGATCG	1 cut(s)	247
Psp124BI	GAGCTC	1 cut(s)	102
PspFI	CCCAGC	1 cut(s)	144
PspN4I	GGNNCC	5 cut(s)	107, 237, 289, 351, 394
PsuI	RGATCY	4 cut(s)	105, 310, 392, 405
PvuI	CGATCG	1 cut(s)	247
PvuII	CAGCTG	1 cut(s)	148
RsaI	GTAC	1 cut(s)	289
RsaNI	GTAC	1 cut(s)	288
SacI	GAGCTC	1 cut(s)	102
SapI	GCTCTTC	1 cut(s)	65
Sau3AI	GATC	9 cut(s)	25, 105, 116, 208, 244, 310, 372, 392, 405
ScrFI	CCNGG	1 cut(s)	292
SduI	GDGCHC	2 cut(s)	102, 276
SetI	ASST	8 cut(s)	33, 102, 150, 241, 255, 289, 348, 384
SfaNI	GCATC	1 cut(s)	173
SsiI	CCGC	2 cut(s)	126, 308
SstI	GAGCTC	1 cut(s)	102
StyD4I	CCNGG	1 cut(s)	290
TaaI	ACNGT	2 cut(s)	93, 186
TaqI	TCGA	6 cut(s)	38, 63, 207, 243, 276, 363
TfiI	GAWTC	2 cut(s)	172, 201
TseFI	GTSAC	1 cut(s)	257
Tsp45I	GTSAC	1 cut(s)	257
TspDTI	ATGAA	4 cut(s)	43, 56, 412, 429
TspGWI	ACGGA	2 cut(s)	245, 248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.