Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006410.1

Orthogroup ID

OG0002702

Physical Location & Seq

Genomic Coordinates Forward (+)

153049 .. 153399

Gene Structure 351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006410.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

atggaaccgtggaagggttactatcatccgacccatgcccaactcaaatccatagtcgccgaggagaagctgaccgcccccttcaacttcaaacgcttcctggagctaatggggatgcacatgaagcctgagcccttcaatcgccagctccgcgaatccttcaaggtccttgacaaggacgccaccgacttcgtctccttctcggagctctggtacatccttaccagcattggcgagacattggaggtcttccctaataacattgaggccggagtcgttgttggtggcgctggagacgagtttgccagtagaaatgcgccggcgtcgttgttggatggtgtcacaccctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko03010 ko04626 map03010 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_6 EF-hand_7

Protein Analysis

116

Amino Acids

13.06

Weight (kDa)

5.12

Isoelectric Point (pI)

45.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002702)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12310 AT1G62820
fragaria_vesca	FvH4_5g00650 FvH4_7g20700
malus_domestica	MD03G1151100.v1.1 MD04G1079800.v1.1 MD06G1074600.v1.1 MD07G1265800.v1.1 MD11G1152700.v1.1 MD17G1283300.v1.1
prunus_persica	Prupe.5G079300_v2.0.a1
pyrus_communis	pycom06g05340
rosa_chinensis	RchiOBHm_Chr1g0364931 RchiOBHm_Chr3g0455101 RchiOBHm_Chr5g0045151 RchiOBHm_Chr6g0299731 RchiOBHm_Chr7g0201611
rosa_laevigata	RLG00000027458
rosa_multiflora	Rmu_sc0002502.1_g000006 Rmu_sc0002895.1_g000017 Rmu_sc0006410.1_g000028 Rmu_sc0007033.1_g000001 Rmu_sc0011159.1_g000005 Rmu_ssc0000112.1_g000026 Rmu_ssc0000304.1_g000001
rosa_roxburghii	Rroxscaffold_3G00255200 Rroxscaffold_4G00292060
rosa_rugosa	Rorug01G0318600 Rorug07G0065200
rosa_samantha	Rh1BG288500 Rh1CG305200 Rh1DG320100 Rh2CG069200 Rh7AG191700 Rh7BG194000 Rh7DG197000
rosa_wichuraiana	Rw1G029000 Rw5G028070 Rw7G016820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	153
AciI	CCGC	2 cut(s)	75, 151
AcyI	GRCGYC	2 cut(s)	180, 323
AfaI	GTAC	1 cut(s)	215
AfiI	CCNNNNNNNGG	2 cut(s)	14, 175
AgsI	TTSAA	4 cut(s)	85, 91, 139, 163
AjnI	CCWGG	1 cut(s)	99
AluBI	AGCT	4 cut(s)	70, 106, 148, 208
AluI	AGCT	4 cut(s)	70, 106, 148, 208
Alw21I	GWGCWC	1 cut(s)	210
Alw26I	GTCTC	3 cut(s)	199, 230, 288
AoxI	GGCC	1 cut(s)	267
ArsI	GACNNNNNNTTYG	2 cut(s)	39, 71
AspLEI	GCGC	2 cut(s)	290, 319
AspS9I	GGNCC	1 cut(s)	166
AvaII	GGWCC	1 cut(s)	166
BanII	GRGCYC	2 cut(s)	135, 210
BbsI	GAAGAC	1 cut(s)	241
Bbv12I	GWGCWC	1 cut(s)	210
BccI	CCATC	1 cut(s)	329
BciT130I	CCWGG	1 cut(s)	101
BcoDI	GTCTC	3 cut(s)	199, 230, 288
BfoI	RGCGCY	1 cut(s)	291
Bme1390I	CCNGG	1 cut(s)	101
Bme18I	GGWCC	1 cut(s)	166
BmgT120I	GGNCC	1 cut(s)	166
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	101
BmsI	GCATC	1 cut(s)	105
BpiI	GAAGAC	1 cut(s)	241
BpmI	CTGGAG	2 cut(s)	122, 312
Bpu10I	CCTNAGC	1 cut(s)	129
BsaHI	GRCGYC	2 cut(s)	180, 323
BsaJI	CCNNGG	2 cut(s)	8, 60
BsaXI	ACNNNNNCTCC	6 cut(s)	179, 197, 209, 227, 264, 294
Bsc4I	CCNNNNNNNGG	2 cut(s)	14, 175
Bse118I	RCCGGY	1 cut(s)	319
Bse1I	ACTGG	1 cut(s)	306
BseBI	CCWGG	1 cut(s)	101
BseDI	CCNNGG	2 cut(s)	8, 60
BseGI	GGATG	4 cut(s)	25, 120, 216, 340
BseLI	CCNNNNNNNGG	2 cut(s)	14, 175
BseMII	CTCAG	1 cut(s)	120
BseNI	ACTGG	1 cut(s)	306
BseRI	GAGGAG	1 cut(s)	77
Bsh1236I	CGCG	1 cut(s)	153
BshFI	GGCC	1 cut(s)	269
BsiHKAI	GWGCWC	1 cut(s)	210
BsiSI	CCGG	2 cut(s)	270, 320
BslI	CCNNNNNNNGG	2 cut(s)	14, 175
BsmAI	GTCTC	3 cut(s)	199, 230, 288
BsmBI	CGTCTC	2 cut(s)	199, 288
BsnI	GGCC	1 cut(s)	269
Bsp1286I	GDGCHC	2 cut(s)	135, 210
BspACI	CCGC	2 cut(s)	75, 151
BspANI	GGCC	1 cut(s)	269
BspCNI	CTCAG	1 cut(s)	121
BspFNI	CGCG	1 cut(s)	153
BspLI	GGNNCC	1 cut(s)	6
BsrFI	RCCGGY	1 cut(s)	319
BsrI	ACTGG	1 cut(s)	306
BssAI	RCCGGY	1 cut(s)	319
BssECI	CCNNGG	2 cut(s)	8, 60
BssNI	GRCGYC	2 cut(s)	180, 323
Bst2UI	CCWGG	1 cut(s)	101
Bst4CI	ACNGT	1 cut(s)	9
BstACI	GRCGYC	2 cut(s)	180, 323
BstC8I	GCNNGC	2 cut(s)	146, 321
BstDEI	CTNAG	1 cut(s)	129
BstDSI	CCRYGG	1 cut(s)	8
BstENI	CCTNNNNNAGG	1 cut(s)	173
BstF5I	GGATG	4 cut(s)	25, 120, 216, 340
BstFNI	CGCG	1 cut(s)	153
BstH2I	RGCGCY	1 cut(s)	291
BstHHI	GCGC	2 cut(s)	290, 319
BstMAI	GTCTC	3 cut(s)	199, 230, 288
BstMWI	GCNNNNNNNGC	2 cut(s)	124, 150
BstNI	CCWGG	1 cut(s)	101
BstSCI	CCNGG	1 cut(s)	99
BstUI	CGCG	1 cut(s)	153
BstV2I	GAAGAC	1 cut(s)	241
BsuRI	GGCC	1 cut(s)	269
BtgI	CCRYGG	1 cut(s)	8
BtsCI	GGATG	4 cut(s)	25, 120, 216, 340
Cac8I	GCNNGC	2 cut(s)	146, 321
CfoI	GCGC	2 cut(s)	290, 319
Cfr10I	RCCGGY	1 cut(s)	319
Cfr13I	GGNCC	1 cut(s)	166
CseI	GACGC	2 cut(s)	188, 312
Csp6I	GTAC	1 cut(s)	214
CviAII	CATG	2 cut(s)	35, 121
CviJI	RGCY	7 cut(s)	70, 106, 127, 133, 148, 208, 269
CviKI_1	RGCY	7 cut(s)	70, 106, 127, 133, 148, 208, 269
CviQI	GTAC	1 cut(s)	214
DdeI	CTNAG	1 cut(s)	129
Ecl136II	GAGCTC	1 cut(s)	208
Eco24I	GRGCYC	2 cut(s)	135, 210
Eco47I	GGWCC	1 cut(s)	166
Eco53kI	GAGCTC	1 cut(s)	208
EcoICRI	GAGCTC	1 cut(s)	208
EcoNI	CCTNNNNNAGG	1 cut(s)	173
EcoO109I	RGGNCCY	1 cut(s)	166
EcoRII	CCWGG	1 cut(s)	99
EcoT38I	GRGCYC	2 cut(s)	135, 210
Esp3I	CGTCTC	2 cut(s)	199, 288
FaeI	CATG	2 cut(s)	38, 124
FaiI	YATR	3 cut(s)	36, 53, 122
FatI	CATG	2 cut(s)	34, 120
FokI	GGATG	4 cut(s)	12, 127, 203, 347
FriOI	GRGCYC	2 cut(s)	135, 210
GlaI	GCGC	2 cut(s)	289, 318
GsuI	CTGGAG	2 cut(s)	122, 312
HaeII	RGCGCY	1 cut(s)	291
HaeIII	GGCC	1 cut(s)	269
HapII	CCGG	2 cut(s)	270, 320
HgaI	GACGC	2 cut(s)	188, 312
HhaI	GCGC	2 cut(s)	290, 319
Hin1I	GRCGYC	2 cut(s)	180, 323
Hin1II	CATG	2 cut(s)	38, 124
Hin6I	GCGC	2 cut(s)	288, 317
HinP1I	GCGC	2 cut(s)	288, 317
HinfI	GANTC	2 cut(s)	155, 273
HpaII	CCGG	2 cut(s)	270, 320
Hpy188I	TCNGA	2 cut(s)	30, 205
Hpy99I	CGWCG	1 cut(s)	328
HpyAV	CCTTC	5 cut(s)	7, 91, 145, 169, 208
HpyCH4III	ACNGT	1 cut(s)	9
HpyCH4V	TGCA	1 cut(s)	118
HpyF10VI	GCNNNNNNNGC	2 cut(s)	124, 150
HpyF3I	CTNAG	1 cut(s)	129
Hsp92I	GRCGYC	2 cut(s)	180, 323
Hsp92II	CATG	2 cut(s)	38, 124
HspAI	GCGC	2 cut(s)	288, 317
KroI	GCCGGC	1 cut(s)	319
KroNI	GCCGGC	1 cut(s)	321
LmnI	GCTCC	3 cut(s)	103, 153, 205
LweI	GCATC	1 cut(s)	105
MaeIII	GTNAC	2 cut(s)	17, 340
MboII	GAAGA	1 cut(s)	241
MhlI	GDGCHC	2 cut(s)	135, 210
MlyI	GAGTC	1 cut(s)	282
MmeI	TCCRAC	2 cut(s)	53, 312
MnlI	CCTC	3 cut(s)	55, 238, 259
MreI	CGCCGGCG	1 cut(s)	319
MroNI	GCCGGC	1 cut(s)	319
MspI	CCGG	2 cut(s)	270, 320
MspR9I	CCNGG	1 cut(s)	101
MvaI	CCWGG	1 cut(s)	101
MvnI	CGCG	1 cut(s)	153
MwoI	GCNNNNNNNGC	2 cut(s)	124, 150
NaeI	GCCGGC	1 cut(s)	321
NgoMIV	GCCGGC	1 cut(s)	319
NlaIII	CATG	2 cut(s)	38, 124
NlaIV	GGNNCC	1 cut(s)	6
NmeAIII	GCCGAG	1 cut(s)	85
NmuCI	GTSAC	1 cut(s)	340
PdiI	GCCGGC	1 cut(s)	321
PfeI	GAWTC	1 cut(s)	155
PflFI	GACNNNGTC	1 cut(s)	191
PfoI	TCCNGGA	1 cut(s)	99
PleI	GAGTC	1 cut(s)	281
PpsI	GAGTC	1 cut(s)	281
PpuMI	RGGWCCY	1 cut(s)	166
Psp124BI	GAGCTC	1 cut(s)	210
Psp5II	RGGWCCY	1 cut(s)	166
Psp6I	CCWGG	1 cut(s)	99
PspGI	CCWGG	1 cut(s)	99
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	166
PspPPI	RGGWCCY	1 cut(s)	166
PsyI	GACNNNGTC	1 cut(s)	191
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
SacI	GAGCTC	1 cut(s)	210
Sau96I	GGNCC	1 cut(s)	166
SchI	GAGTC	1 cut(s)	282
ScrFI	CCNGG	1 cut(s)	101
SduI	GDGCHC	2 cut(s)	135, 210
SetI	ASST	6 cut(s)	72, 108, 150, 168, 210, 249
SfaNI	GCATC	1 cut(s)	105
SgrAI	CRCCGGYG	1 cut(s)	319
SinI	GGWCC	1 cut(s)	166
SsiI	CCGC	2 cut(s)	75, 151
SstI	GAGCTC	1 cut(s)	210
StyD4I	CCNGG	1 cut(s)	99
TaaI	ACNGT	1 cut(s)	9
TfiI	GAWTC	1 cut(s)	155
TseFI	GTSAC	1 cut(s)	340
Tsp45I	GTSAC	1 cut(s)	340
TspDTI	ATGAA	1 cut(s)	137
Tth111I	GACNNNGTC	1 cut(s)	191
VpaK11BI	GGWCC	1 cut(s)	166
XagI	CCTNNNNNAGG	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.