Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002502.1

Orthogroup ID

OG0002702

Physical Location & Seq

Genomic Coordinates Forward (+)

34060 .. 36035

Gene Structure 1976 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002502.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

atgatggattcagactcatcacacaccaggaatgctgccaacattggcatgcgttcactttccccatcccaaaatgacaatagtgttttggaaggttttaatgatgctaagtacctctctgacccatacaaaggacgttcccaaactagttatgtgttcatcatggacaggtctctctctccatataggcgtcggcggcttgctgcatctcctgcgagctgcttcagagctccgacgacagagatgggcttggattgcagatcattgtcgatgcaatctctctcgctgagccgccttttcctccggcgaggatttcccgataaccgctacttcttcgtcgaattcaccctcattctctggccacactatccgatcgagacccaggcccaactcaaatccatagtcgccgaggagaagctaatcgcccccttcgactttaaacgcttcctggagctgatggggatggacatgaagcttcagccctttaatcgccagctctgcgatgccttcaaggtcctcgacaaggacgccaccgacttcgtctctgtcttggagctccggcacatcctcaccagcatcggcgggaaattggaggtcttccctaataactttggggccggcgtcgttgttggtggcgctggagacgagtttgtcggtagaaatgcgccggtgtcgttgttggatggctgcttgggtgcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko03010 ko04626 map03010 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_6 EF-hand_7

Protein Analysis

233

Amino Acids

26.1

Weight (kDa)

7.67

Isoelectric Point (pI)

62.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002702)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12310 AT1G62820
fragaria_vesca	FvH4_5g00650 FvH4_7g20700
malus_domestica	MD03G1151100.v1.1 MD04G1079800.v1.1 MD06G1074600.v1.1 MD07G1265800.v1.1 MD11G1152700.v1.1 MD17G1283300.v1.1
prunus_persica	Prupe.5G079300_v2.0.a1
pyrus_communis	pycom06g05340
rosa_chinensis	RchiOBHm_Chr1g0364931 RchiOBHm_Chr3g0455101 RchiOBHm_Chr5g0045151 RchiOBHm_Chr6g0299731 RchiOBHm_Chr7g0201611
rosa_laevigata	RLG00000027458
rosa_multiflora	Rmu_sc0002502.1_g000006 Rmu_sc0002895.1_g000017 Rmu_sc0006410.1_g000028 Rmu_sc0007033.1_g000001 Rmu_sc0011159.1_g000005 Rmu_ssc0000112.1_g000026 Rmu_ssc0000304.1_g000001
rosa_roxburghii	Rroxscaffold_3G00255200 Rroxscaffold_4G00292060
rosa_rugosa	Rorug01G0318600 Rorug07G0065200
rosa_samantha	Rh1BG288500 Rh1CG305200 Rh1DG320100 Rh2CG069200 Rh7AG191700 Rh7BG194000 Rh7DG197000
rosa_wichuraiana	Rw1G029000 Rw5G028070 Rw7G016820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	650
AccB1I	GGYRCC	1 cut(s)	695
AciI	CCGC	4 cut(s)	196, 292, 325, 582
AcoI	YGGCCR	1 cut(s)	359
AcsI	RAATTY	1 cut(s)	341
AcuI	CTGAAG	2 cut(s)	208, 461
AcyI	GRCGYC	3 cut(s)	190, 528, 621
AfaI	GTAC	1 cut(s)	113
AfiI	CCNNNNNNNGG	2 cut(s)	131, 523
AgsI	TTSAA	1 cut(s)	511
AhlI	ACTAGT	1 cut(s)	146
AjnI	CCWGG	3 cut(s)	26, 381, 447
AluBI	AGCT	7 cut(s)	219, 230, 418, 454, 475, 496, 556
AluI	AGCT	7 cut(s)	219, 230, 418, 454, 475, 496, 556
Alw21I	GWGCWC	2 cut(s)	232, 558
Alw26I	GTCTC	4 cut(s)	177, 371, 547, 636
AoxI	GGCC	3 cut(s)	359, 384, 615
ApeKI	GCWGC	4 cut(s)	35, 203, 219, 687
ApoI	RAATTY	1 cut(s)	341
ArsI	GACNNNNNNTTYG	2 cut(s)	387, 419
AspLEI	GCGC	2 cut(s)	638, 667
AspS9I	GGNCC	3 cut(s)	385, 514, 615
AsuHPI	GGTGA	2 cut(s)	337, 562
AvaII	GGWCC	1 cut(s)	514
BalI	TGGCCA	1 cut(s)	361
BanI	GGYRCC	1 cut(s)	695
BanII	GRGCYC	2 cut(s)	232, 558
BbsI	GAAGAC	1 cut(s)	589
Bbv12I	GWGCWC	2 cut(s)	232, 558
BbvI	GCAGC	4 cut(s)	22, 190, 206, 674
BccI	CCATC	5 cut(s)	73, 238, 451, 457, 677
BciT130I	CCWGG	3 cut(s)	28, 383, 449
BcoDI	GTCTC	4 cut(s)	177, 371, 547, 636
BcuI	ACTAGT	1 cut(s)	146
BfaI	CTAG	1 cut(s)	147
BfoI	RGCGCY	1 cut(s)	639
BisI	GCNGC	6 cut(s)	36, 197, 204, 220, 292, 688
BlpI	GCTNAGC	1 cut(s)	287
BlsI	GCNGC	6 cut(s)	37, 198, 205, 221, 293, 689
Bme1390I	CCNGG	3 cut(s)	28, 383, 449
Bme18I	GGWCC	1 cut(s)	514
BmgT120I	GGNCC	3 cut(s)	385, 514, 615
BmiI	GGNNCC	2 cut(s)	616, 697
BmrFI	CCNGG	3 cut(s)	28, 383, 449
BmsI	GCATC	5 cut(s)	94, 215, 261, 493, 585
BpiI	GAAGAC	1 cut(s)	589
BpmI	CTGGAG	2 cut(s)	470, 660
Bpu1102I	GCTNAGC	1 cut(s)	287
BsaHI	GRCGYC	3 cut(s)	190, 528, 621
BsaI	GGTCTC	2 cut(s)	177, 371
BsaJI	CCNNGG	2 cut(s)	381, 408
Bsc4I	CCNNNNNNNGG	2 cut(s)	131, 523
Bse118I	RCCGGY	2 cut(s)	617, 667
BseBI	CCWGG	3 cut(s)	28, 383, 449
BseDI	CCNNGG	2 cut(s)	381, 408
BseGI	GGATG	4 cut(s)	65, 468, 564, 688
BseLI	CCNNNNNNNGG	2 cut(s)	131, 523
BseMII	CTCAG	1 cut(s)	278
BseRI	GAGGAG	1 cut(s)	425
BseXI	GCAGC	4 cut(s)	22, 190, 206, 674
Bsh1285I	CGRYCG	1 cut(s)	375
BshFI	GGCC	3 cut(s)	361, 386, 617
BshNI	GGYRCC	1 cut(s)	695
BsiEI	CGRYCG	1 cut(s)	375
BsiHKAI	GWGCWC	2 cut(s)	232, 558
BsiSI	CCGG	4 cut(s)	304, 559, 618, 668
BslI	CCNNNNNNNGG	2 cut(s)	131, 523
BsmAI	GTCTC	4 cut(s)	177, 371, 547, 636
BsmBI	CGTCTC	2 cut(s)	547, 636
BsmI	GAATGC	1 cut(s)	37
BsnI	GGCC	3 cut(s)	361, 386, 617
Bso31I	GGTCTC	2 cut(s)	177, 371
Bsp1286I	GDGCHC	2 cut(s)	232, 558
Bsp143I	GATC	2 cut(s)	260, 372
Bsp1720I	GCTNAGC	1 cut(s)	287
BspACI	CCGC	4 cut(s)	196, 292, 325, 582
BspANI	GGCC	3 cut(s)	361, 386, 617
BspCNI	CTCAG	1 cut(s)	279
BspLI	GGNNCC	2 cut(s)	616, 697
BspT107I	GGYRCC	1 cut(s)	695
BspTNI	GGTCTC	2 cut(s)	177, 371
BsrFI	RCCGGY	2 cut(s)	617, 667
BssAI	RCCGGY	2 cut(s)	617, 667
BssECI	CCNNGG	2 cut(s)	381, 408
BssMI	GATC	2 cut(s)	260, 372
BssNI	GRCGYC	3 cut(s)	190, 528, 621
Bst2UI	CCWGG	3 cut(s)	28, 383, 449
BstACI	GRCGYC	3 cut(s)	190, 528, 621
BstAPI	GCANNNNNTGC	1 cut(s)	212
BstC8I	GCNNGC	5 cut(s)	50, 201, 217, 494, 619
BstDEI	CTNAG	2 cut(s)	108, 287
BstENI	CCTNNNNNAGG	1 cut(s)	521
BstF5I	GGATG	4 cut(s)	65, 468, 564, 688
BstH2I	RGCGCY	1 cut(s)	639
BstHHI	GCGC	2 cut(s)	638, 667
BstKTI	GATC	2 cut(s)	263, 375
BstMAI	GTCTC	4 cut(s)	177, 371, 547, 636
BstMBI	GATC	2 cut(s)	260, 372
BstMCI	CGRYCG	1 cut(s)	375
BstMWI	GCNNNNNNNGC	4 cut(s)	196, 212, 255, 498
BstNI	CCWGG	3 cut(s)	28, 383, 449
BstNSI	RCATGY	1 cut(s)	52
BstSCI	CCNGG	3 cut(s)	26, 381, 447
BstV1I	GCAGC	4 cut(s)	22, 190, 206, 674
BstV2I	GAAGAC	1 cut(s)	589
BsuRI	GGCC	3 cut(s)	361, 386, 617
BtgZI	GCGATG	1 cut(s)	516
BtsCI	GGATG	4 cut(s)	65, 468, 564, 688
Cac8I	GCNNGC	5 cut(s)	50, 201, 217, 494, 619
CfoI	GCGC	2 cut(s)	638, 667
Cfr10I	RCCGGY	2 cut(s)	617, 667
Cfr13I	GGNCC	3 cut(s)	385, 514, 615
CseI	GACGC	3 cut(s)	179, 536, 610
Csp6I	GTAC	1 cut(s)	112
CviAII	CATG	3 cut(s)	49, 163, 469
CviQI	GTAC	1 cut(s)	112
DdeI	CTNAG	2 cut(s)	108, 287
DpnI	GATC	2 cut(s)	262, 374
DpnII	GATC	2 cut(s)	260, 372
DraI	TTTAAA	1 cut(s)	439
DrdI	GACNNNNNNGTC	1 cut(s)	650
DseDI	GACNNNNNNGTC	1 cut(s)	650
EaeI	YGGCCR	1 cut(s)	359
Ecl136II	GAGCTC	2 cut(s)	230, 556
Eco24I	GRGCYC	2 cut(s)	232, 558
Eco31I	GGTCTC	2 cut(s)	177, 371
Eco47I	GGWCC	1 cut(s)	514
Eco53kI	GAGCTC	2 cut(s)	230, 556
Eco57I	CTGAAG	2 cut(s)	208, 461
EcoICRI	GAGCTC	2 cut(s)	230, 556
EcoNI	CCTNNNNNAGG	1 cut(s)	521
EcoO109I	RGGNCCY	1 cut(s)	514
EcoRI	GAATTC	1 cut(s)	341
EcoRII	CCWGG	3 cut(s)	26, 381, 447
EcoT38I	GRGCYC	2 cut(s)	232, 558
Esp3I	CGTCTC	2 cut(s)	547, 636
FaeI	CATG	3 cut(s)	52, 166, 472
FaiI	YATR	8 cut(s)	50, 127, 153, 164, 184, 186, 401, 470
FatI	CATG	3 cut(s)	48, 162, 468
FauI	CCCGC	1 cut(s)	575
Fnu4HI	GCNGC	6 cut(s)	36, 197, 204, 220, 292, 688
FokI	GGATG	4 cut(s)	52, 475, 551, 695
FriOI	GRGCYC	2 cut(s)	232, 558
Fsp4HI	GCNGC	6 cut(s)	36, 197, 204, 220, 292, 688
FspBI	CTAG	1 cut(s)	147
GlaI	GCGC	2 cut(s)	637, 666
GluI	GCNGC	6 cut(s)	36, 197, 204, 220, 292, 688
GsuI	CTGGAG	2 cut(s)	470, 660
HaeII	RGCGCY	1 cut(s)	639
HaeIII	GGCC	3 cut(s)	361, 386, 617
HapII	CCGG	4 cut(s)	304, 559, 618, 668
HgaI	GACGC	3 cut(s)	179, 536, 610
HhaI	GCGC	2 cut(s)	638, 667
Hin1I	GRCGYC	3 cut(s)	190, 528, 621
Hin1II	CATG	3 cut(s)	52, 166, 472
Hin6I	GCGC	2 cut(s)	636, 665
HinP1I	GCGC	2 cut(s)	636, 665
HindIII	AAGCTT	1 cut(s)	473
HinfI	GANTC	2 cut(s)	8, 14
HpaII	CCGG	4 cut(s)	304, 559, 618, 668
HphI	GGTGA	2 cut(s)	337, 562
Hpy166II	GTNNAC	1 cut(s)	56
Hpy188I	TCNGA	5 cut(s)	13, 121, 227, 234, 372
Hpy188III	TCNNGA	2 cut(s)	317, 376
Hpy8I	GTNNAC	1 cut(s)	56
Hpy99I	CGWCG	4 cut(s)	195, 238, 341, 626
HpyAV	CCTTC	3 cut(s)	86, 439, 517
HpyCH4IV	ACGT	1 cut(s)	136
HpyCH4V	TGCA	3 cut(s)	206, 258, 274
HpyF10VI	GCNNNNNNNGC	4 cut(s)	196, 212, 255, 498
HpyF3I	CTNAG	2 cut(s)	108, 287
HpySE526I	ACGT	1 cut(s)	136
Hsp92I	GRCGYC	3 cut(s)	190, 528, 621
Hsp92II	CATG	3 cut(s)	52, 166, 472
HspAI	GCGC	2 cut(s)	636, 665
KroI	GCCGGC	1 cut(s)	617
KroNI	GCCGGC	1 cut(s)	619
Kzo9I	GATC	2 cut(s)	260, 372
LmnI	GCTCC	4 cut(s)	235, 451, 553, 561
Lsp1109I	GCAGC	4 cut(s)	22, 190, 206, 674
LweI	GCATC	5 cut(s)	94, 215, 261, 493, 585
MaeI	CTAG	1 cut(s)	147
MaeII	ACGT	1 cut(s)	136
MalI	GATC	2 cut(s)	262, 374
MboI	GATC	2 cut(s)	260, 372
MboII	GAAGA	2 cut(s)	325, 589
MhlI	GDGCHC	2 cut(s)	232, 558
MlsI	TGGCCA	1 cut(s)	361
MluCI	AATT	2 cut(s)	341, 587
MluNI	TGGCCA	1 cut(s)	361
MlyI	GAGTC	1 cut(s)	8
MmeI	TCCRAC	2 cut(s)	257, 660
MnlI	CCTC	8 cut(s)	125, 302, 311, 359, 403, 527, 578, 586
Mox20I	TGGCCA	1 cut(s)	361
MroNI	GCCGGC	1 cut(s)	617
MscI	TGGCCA	1 cut(s)	361
MseI	TTAA	3 cut(s)	99, 438, 486
MslI	CAYNNNNRTG	1 cut(s)	47
Msp20I	TGGCCA	1 cut(s)	361
MspI	CCGG	4 cut(s)	304, 559, 618, 668
MspR9I	CCNGG	3 cut(s)	28, 383, 449
Mva1269I	GAATGC	1 cut(s)	37
MvaI	CCWGG	3 cut(s)	28, 383, 449
MwoI	GCNNNNNNNGC	4 cut(s)	196, 212, 255, 498
NaeI	GCCGGC	1 cut(s)	619
NdeII	GATC	2 cut(s)	260, 372
NgoMIV	GCCGGC	1 cut(s)	617
NlaIII	CATG	3 cut(s)	52, 166, 472
NlaIV	GGNNCC	2 cut(s)	616, 697
NmeAIII	GCCGAG	1 cut(s)	433
NspI	RCATGY	1 cut(s)	52
PaeI	GCATGC	1 cut(s)	52
PcsI	WCGNNNNNNNCGW	1 cut(s)	429
PctI	GAATGC	1 cut(s)	37
PdiI	GCCGGC	1 cut(s)	619
PfeI	GAWTC	1 cut(s)	8
PflFI	GACNNNGTC	1 cut(s)	539
PfoI	TCCNGGA	1 cut(s)	447
PkrI	GCNGC	6 cut(s)	37, 198, 205, 221, 293, 689
Ple19I	CGATCG	1 cut(s)	375
PleI	GAGTC	1 cut(s)	8
PpsI	GAGTC	1 cut(s)	8
PpuMI	RGGWCCY	1 cut(s)	514
Psp124BI	GAGCTC	2 cut(s)	232, 558
Psp5II	RGGWCCY	1 cut(s)	514
Psp6I	CCWGG	3 cut(s)	26, 381, 447
PspGI	CCWGG	3 cut(s)	26, 381, 447
PspN4I	GGNNCC	2 cut(s)	616, 697
PspPI	GGNCC	3 cut(s)	385, 514, 615
PspPPI	RGGWCCY	1 cut(s)	514
PsyI	GACNNNGTC	1 cut(s)	539
PvuI	CGATCG	1 cut(s)	375
RsaI	GTAC	1 cut(s)	113
RsaNI	GTAC	1 cut(s)	112
RseI	CAYNNNNRTG	1 cut(s)	47
SacI	GAGCTC	2 cut(s)	232, 558
SaqAI	TTAA	3 cut(s)	99, 438, 486
SatI	GCNGC	6 cut(s)	36, 197, 204, 220, 292, 688
Sau3AI	GATC	2 cut(s)	260, 372
Sau96I	GGNCC	3 cut(s)	385, 514, 615
SchI	GAGTC	1 cut(s)	8
ScrFI	CCNGG	3 cut(s)	28, 383, 449
SduI	GDGCHC	2 cut(s)	232, 558
SfaNI	GCATC	5 cut(s)	94, 215, 261, 493, 585
SgrAI	CRCCGGYG	1 cut(s)	667
SinI	GGWCC	1 cut(s)	514
SmiMI	CAYNNNNRTG	1 cut(s)	47
SpeI	ACTAGT	1 cut(s)	146
SphI	GCATGC	1 cut(s)	52
Sse9I	AATT	2 cut(s)	341, 587
SsiI	CCGC	4 cut(s)	196, 292, 325, 582
SspMI	CTAG	1 cut(s)	147
SstI	GAGCTC	2 cut(s)	232, 558
StyD4I	CCNGG	3 cut(s)	26, 381, 447
TaiI	ACGT	1 cut(s)	139
TaqI	TCGA	5 cut(s)	269, 339, 375, 432, 519
TasI	AATT	2 cut(s)	341, 587
TauI	GCSGC	2 cut(s)	199, 294
TfiI	GAWTC	1 cut(s)	8
Tru1I	TTAA	3 cut(s)	99, 438, 486
Tru9I	TTAA	3 cut(s)	99, 438, 486
TseI	GCWGC	4 cut(s)	35, 203, 219, 687
TspDTI	ATGAA	2 cut(s)	148, 485
Tth111I	GACNNNGTC	1 cut(s)	539
VpaK11BI	GGWCC	1 cut(s)	514
XagI	CCTNNNNNAGG	1 cut(s)	521
XapI	RAATTY	1 cut(s)	341
XceI	RCATGY	1 cut(s)	52
XspI	CTAG	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.