Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0002702

Physical Location & Seq

Genomic Coordinates Forward (+)

34236476 .. 34236709

Gene Structure 234 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1283300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGGCCAAGCACATGAAGCCCGAGCCCTTCGATCGCCAGCTCCGCGACGCCTTCAAGGTCCTCGACAAGGACTCAACCGGCTTCGTGTCCGTGTCGGAGCTCCGGCACATCCTCACCAGCATCGGCGAGAAATTGGAGCCGTCCGAGTTCGACGAGTGGATCCGGGAGGTGGATGTCGGGTCCGATGGCAAGATCAAATACGAGGACTTCATTGCCAGAACGGTGGCCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko03010 ko04626 map03010 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_6 EF-hand_7

Protein Analysis

78

Amino Acids

8.88

Weight (kDa)

5.32

Isoelectric Point (pI)

35.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	12 - 72	5.8e-17	EF-hand domain pair
EF-hand_6	PF13405	13 - 42	1.6e-08	EF-hand domain
EF-hand_1	PF00036	14 - 40	1.8e-06	EF hand domain
EF-hand_9	PF14658	17 - 71	6.6e-06	EF-hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002702)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12310 AT1G62820
fragaria_vesca	FvH4_5g00650 FvH4_7g20700
malus_domestica	MD03G1151100.v1.1 MD04G1079800.v1.1 MD06G1074600.v1.1 MD07G1265800.v1.1 MD11G1152700.v1.1 MD17G1283300.v1.1
prunus_persica	Prupe.5G079300_v2.0.a1
pyrus_communis	pycom06g05340
rosa_chinensis	RchiOBHm_Chr1g0364931 RchiOBHm_Chr3g0455101 RchiOBHm_Chr5g0045151 RchiOBHm_Chr6g0299731 RchiOBHm_Chr7g0201611
rosa_laevigata	RLG00000027458
rosa_multiflora	Rmu_sc0002502.1_g000006 Rmu_sc0002895.1_g000017 Rmu_sc0006410.1_g000028 Rmu_sc0007033.1_g000001 Rmu_sc0011159.1_g000005 Rmu_ssc0000112.1_g000026 Rmu_ssc0000304.1_g000001
rosa_roxburghii	Rroxscaffold_3G00255200 Rroxscaffold_4G00292060
rosa_rugosa	Rorug01G0318600 Rorug07G0065200
rosa_samantha	Rh1BG288500 Rh1CG305200 Rh1DG320100 Rh2CG069200 Rh7AG191700 Rh7BG194000 Rh7DG197000
rosa_wichuraiana	Rw1G029000 Rw5G028070 Rw7G016820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	45
AciI	CCGC	1 cut(s)	43
AclWI	GGATC	2 cut(s)	154, 167
AcoI	YGGCCR	2 cut(s)	3, 225
AcyI	GRCGYC	1 cut(s)	48
AfiI	CCNNNNNNNGG	2 cut(s)	67, 169
AgsI	TTSAA	1 cut(s)	55
AluBI	AGCT	2 cut(s)	40, 100
AluI	AGCT	2 cut(s)	40, 100
Alw21I	GWGCWC	1 cut(s)	102
AlwI	GGATC	2 cut(s)	154, 167
Ama87I	CYCGRG	1 cut(s)	20
AoxI	GGCC	2 cut(s)	3, 225
AspS9I	GGNCC	2 cut(s)	58, 180
AsuC2I	CCSGG	1 cut(s)	164
AsuHPI	GGTGA	1 cut(s)	106
AvaI	CYCGRG	1 cut(s)	20
AvaII	GGWCC	2 cut(s)	58, 180
BalI	TGGCCA	2 cut(s)	5, 227
BamHI	GGATCC	1 cut(s)	159
BanII	GRGCYC	2 cut(s)	27, 102
Bbv12I	GWGCWC	1 cut(s)	102
BccI	CCATC	1 cut(s)	179
BceAI	ACGGC	1 cut(s)	124
BcnI	CCSGG	1 cut(s)	164
Bme1390I	CCNGG	1 cut(s)	164
Bme18I	GGWCC	2 cut(s)	58, 180
BmeT110I	CYCGRG	1 cut(s)	20
BmgT120I	GGNCC	2 cut(s)	58, 180
BmiI	GGNNCC	3 cut(s)	138, 161, 181
BmrFI	CCNGG	1 cut(s)	164
BmsI	GCATC	1 cut(s)	129
BpuMI	CCSGG	1 cut(s)	164
BsaHI	GRCGYC	1 cut(s)	48
Bsc4I	CCNNNNNNNGG	2 cut(s)	67, 169
Bse118I	RCCGGY	1 cut(s)	77
Bse3DI	GCAATG	1 cut(s)	210
BseGI	GGATG	2 cut(s)	108, 178
BseLI	CCNNNNNNNGG	2 cut(s)	67, 169
BseMI	GCAATG	1 cut(s)	210
Bsh1236I	CGCG	1 cut(s)	45
Bsh1285I	CGRYCG	1 cut(s)	34
BshFI	GGCC	2 cut(s)	5, 227
BsiEI	CGRYCG	1 cut(s)	34
BsiHKAI	GWGCWC	1 cut(s)	102
BsiHKCI	CYCGRG	1 cut(s)	20
BsiSI	CCGG	3 cut(s)	78, 103, 163
BslI	CCNNNNNNNGG	2 cut(s)	67, 169
BsnI	GGCC	2 cut(s)	5, 227
BsoBI	CYCGRG	1 cut(s)	20
Bsp1286I	GDGCHC	2 cut(s)	27, 102
Bsp143I	GATC	3 cut(s)	31, 159, 192
BspACI	CCGC	1 cut(s)	43
BspANI	GGCC	2 cut(s)	5, 227
BspFNI	CGCG	1 cut(s)	45
BspLI	GGNNCC	3 cut(s)	138, 161, 181
BspPI	GGATC	2 cut(s)	154, 167
BsrDI	GCAATG	1 cut(s)	210
BsrFI	RCCGGY	1 cut(s)	77
BssAI	RCCGGY	1 cut(s)	77
BssMI	GATC	3 cut(s)	31, 159, 192
BssNI	GRCGYC	1 cut(s)	48
Bst4CI	ACNGT	1 cut(s)	223
BstACI	GRCGYC	1 cut(s)	48
BstC8I	GCNNGC	1 cut(s)	38
BstENI	CCTNNNNNAGG	1 cut(s)	65
BstF5I	GGATG	2 cut(s)	108, 178
BstFNI	CGCG	1 cut(s)	45
BstKTI	GATC	3 cut(s)	34, 162, 195
BstMBI	GATC	3 cut(s)	31, 159, 192
BstMCI	CGRYCG	1 cut(s)	34
BstMWI	GCNNNNNNNGC	2 cut(s)	16, 42
BstSCI	CCNGG	1 cut(s)	162
BstUI	CGCG	1 cut(s)	45
BstX2I	RGATCY	1 cut(s)	159
BstXI	CCANNNNNNTGG	1 cut(s)	223
BstYI	RGATCY	1 cut(s)	159
BsuRI	GGCC	2 cut(s)	5, 227
BtsCI	GGATG	2 cut(s)	108, 178
Cac8I	GCNNGC	1 cut(s)	38
Cfr10I	RCCGGY	1 cut(s)	77
Cfr13I	GGNCC	2 cut(s)	58, 180
CseI	GACGC	1 cut(s)	56
CviAII	CATG	1 cut(s)	13
CviJI	RGCY	8 cut(s)	5, 19, 25, 40, 81, 100, 139, 227
CviKI_1	RGCY	8 cut(s)	5, 19, 25, 40, 81, 100, 139, 227
DpnI	GATC	3 cut(s)	33, 161, 194
DpnII	GATC	3 cut(s)	31, 159, 192
EaeI	YGGCCR	2 cut(s)	3, 225
Ecl136II	GAGCTC	1 cut(s)	100
Eco24I	GRGCYC	2 cut(s)	27, 102
Eco47I	GGWCC	2 cut(s)	58, 180
Eco53kI	GAGCTC	1 cut(s)	100
Eco88I	CYCGRG	1 cut(s)	20
EcoICRI	GAGCTC	1 cut(s)	100
EcoNI	CCTNNNNNAGG	1 cut(s)	65
EcoO109I	RGGNCCY	1 cut(s)	58
EcoT38I	GRGCYC	2 cut(s)	27, 102
FaeI	CATG	1 cut(s)	16
FaiI	YATR	1 cut(s)	14
FatI	CATG	1 cut(s)	12
FokI	GGATG	2 cut(s)	95, 185
FriOI	GRGCYC	2 cut(s)	27, 102
HaeIII	GGCC	2 cut(s)	5, 227
HapII	CCGG	3 cut(s)	78, 103, 163
HgaI	GACGC	1 cut(s)	56
Hin1I	GRCGYC	1 cut(s)	48
Hin1II	CATG	1 cut(s)	16
HinfI	GANTC	1 cut(s)	71
HpaII	CCGG	3 cut(s)	78, 103, 163
HphI	GGTGA	1 cut(s)	106
Hpy188I	TCNGA	3 cut(s)	97, 145, 184
Hpy99I	CGWCG	2 cut(s)	50, 155
HpyAV	CCTTC	2 cut(s)	37, 61
HpyCH4III	ACNGT	1 cut(s)	223
HpyF10VI	GCNNNNNNNGC	2 cut(s)	16, 42
Hsp92I	GRCGYC	1 cut(s)	48
Hsp92II	CATG	1 cut(s)	16
Kzo9I	GATC	3 cut(s)	31, 159, 192
LmnI	GCTCC	4 cut(s)	45, 97, 105, 136
LpnPI	CCDG	6 cut(s)	50, 91, 116, 130, 176, 229
LweI	GCATC	1 cut(s)	129
MalI	GATC	3 cut(s)	33, 161, 194
MboI	GATC	3 cut(s)	31, 159, 192
MflI	RGATCY	1 cut(s)	159
MhlI	GDGCHC	2 cut(s)	27, 102
MlsI	TGGCCA	2 cut(s)	5, 227
MluCI	AATT	1 cut(s)	131
MluNI	TGGCCA	2 cut(s)	5, 227
MlyI	GAGTC	1 cut(s)	65
MmeI	TCCRAC	1 cut(s)	75
MnlI	CCTC	4 cut(s)	71, 122, 160, 196
Mox20I	TGGCCA	2 cut(s)	5, 227
MscI	TGGCCA	2 cut(s)	5, 227
Msp20I	TGGCCA	2 cut(s)	5, 227
MspI	CCGG	3 cut(s)	78, 103, 163
MspR9I	CCNGG	1 cut(s)	164
MvnI	CGCG	1 cut(s)	45
MwoI	GCNNNNNNNGC	2 cut(s)	16, 42
NciI	CCSGG	1 cut(s)	164
NdeII	GATC	3 cut(s)	31, 159, 192
NlaIII	CATG	1 cut(s)	16
NlaIV	GGNNCC	3 cut(s)	138, 161, 181
PfoI	TCCNGGA	1 cut(s)	162
Ple19I	CGATCG	1 cut(s)	34
PleI	GAGTC	1 cut(s)	65
PpsI	GAGTC	1 cut(s)	65
PpuMI	RGGWCCY	1 cut(s)	58
Psp124BI	GAGCTC	1 cut(s)	102
Psp5II	RGGWCCY	1 cut(s)	58
PspN4I	GGNNCC	3 cut(s)	138, 161, 181
PspPI	GGNCC	2 cut(s)	58, 180
PspPPI	RGGWCCY	1 cut(s)	58
PsuI	RGATCY	1 cut(s)	159
PvuI	CGATCG	1 cut(s)	34
SacI	GAGCTC	1 cut(s)	102
Sau3AI	GATC	3 cut(s)	31, 159, 192
Sau96I	GGNCC	2 cut(s)	58, 180
SchI	GAGTC	1 cut(s)	65
ScrFI	CCNGG	1 cut(s)	164
SduI	GDGCHC	2 cut(s)	27, 102
SetI	ASST	4 cut(s)	42, 60, 102, 171
SfaNI	GCATC	1 cut(s)	129
SinI	GGWCC	2 cut(s)	58, 180
Sse9I	AATT	1 cut(s)	131
SsiI	CCGC	1 cut(s)	43
SstI	GAGCTC	1 cut(s)	102
StyD4I	CCNGG	1 cut(s)	162
TaaI	ACNGT	1 cut(s)	223
TaqI	TCGA	3 cut(s)	30, 63, 150
TasI	AATT	1 cut(s)	131
TspDTI	ATGAA	2 cut(s)	29, 199
TspGWI	ACGGA	1 cut(s)	79
VpaK11BI	GGWCC	2 cut(s)	58, 180
XagI	CCTNNNNNAGG	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.