Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002702

Physical Location & Seq

Genomic Coordinates Reverse (-)

49458631 .. 49463052

Gene Structure 4422 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00255200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGAAAGAAAAACGAGAGGATGTCATCCCCAAGAAGCTGCAGAGGTGTTTCTCAAAGTGGGTTCGACATGAAGGTATTTACACCAGAGAGAAACTGAAACAGAGAGAGGAGAAAGAAAGAGAAACTACCCGGACCCGAACCCGAAAACCCGAATCGGAAAAGCTTGGGAAAAATGGGAAAGGATCTGAGCGACGATCAAGTCAACTCGATGAAGGAGGCCTTCACGCTCTTCGACACGGACAACGACGGCAAGATCGCCCCGTCGGAATTGGGGATCCTAATGCGGTCCCTGGGCGGCAACCCGACCCAGGCCCAACTCAAATCCATAGTCGCCGAGGAGAAGCTGACCGCCCCTTCGACTTCAAACGCTTTCTGGAGCTGATGGGGAAGCACATGAAGCCGGAGCCCTTCGATCGCCAGCTCCGCGACGCCTTCAAGGTCCTCGACAAGGACGCCACCGGCTTCGTCTCCGTGTCGGAGCTCCGGCACATCCTCACCAGCATCGGCGAGAAATTGGAGCCGTCGGAGTTCGACGAGTGGATCCGGGAGGTCGATGTGGGCAAAGATGGCAAGATCAAATACGAGGACTTCATCGCCAGAATGGTCGCCAACAAGTCTCATCCATATATTGAAACTCTGCAGTACGTTGAATACTGTTTGAACATCGATGCACAAATATTAGAGGCTTTTAGACCATCCCAGCTCAAATGCCAGGACATGAGTGCTGGCTGTGAATCATCAAAAGGCATGGGGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko03010 ko04626 map03010 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_6 EF-hand_7

Protein Analysis

252

Amino Acids

29.21

Weight (kDa)

9.15

Isoelectric Point (pI)

50.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	139 - 201	4.8e-16	EF-hand domain pair
EF-hand_6	PF13405	140 - 169	3.3e-07	EF-hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002702)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12310 AT1G62820
fragaria_vesca	FvH4_5g00650 FvH4_7g20700
malus_domestica	MD03G1151100.v1.1 MD04G1079800.v1.1 MD06G1074600.v1.1 MD07G1265800.v1.1 MD11G1152700.v1.1 MD17G1283300.v1.1
prunus_persica	Prupe.5G079300_v2.0.a1
pyrus_communis	pycom06g05340
rosa_chinensis	RchiOBHm_Chr1g0364931 RchiOBHm_Chr3g0455101 RchiOBHm_Chr5g0045151 RchiOBHm_Chr6g0299731 RchiOBHm_Chr7g0201611
rosa_laevigata	RLG00000027458
rosa_multiflora	Rmu_sc0002502.1_g000006 Rmu_sc0002895.1_g000017 Rmu_sc0006410.1_g000028 Rmu_sc0007033.1_g000001 Rmu_sc0011159.1_g000005 Rmu_ssc0000112.1_g000026 Rmu_ssc0000304.1_g000001
rosa_roxburghii	Rroxscaffold_3G00255200 Rroxscaffold_4G00292060
rosa_rugosa	Rorug01G0318600 Rorug07G0065200
rosa_samantha	Rh1BG288500 Rh1CG305200 Rh1DG320100 Rh2CG069200 Rh7AG191700 Rh7BG194000 Rh7DG197000
rosa_wichuraiana	Rw1G029000 Rw5G028070 Rw7G016820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	198
AccII	CGCG	1 cut(s)	426
AciI	CCGC	4 cut(s)	284, 295, 349, 424
AclWI	GGATC	5 cut(s)	190, 269, 282, 535, 548
AcyI	GRCGYC	2 cut(s)	429, 453
AfaI	GTAC	1 cut(s)	644
AfiI	CCNNNNNNNGG	2 cut(s)	308, 448
AgsI	TTSAA	5 cut(s)	364, 436, 632, 650, 661
AjnI	CCWGG	3 cut(s)	289, 307, 711
AluBI	AGCT	7 cut(s)	37, 163, 344, 379, 421, 481, 703
AluI	AGCT	7 cut(s)	37, 163, 344, 379, 421, 481, 703
Alw21I	GWGCWC	1 cut(s)	483
Alw26I	GTCTC	2 cut(s)	472, 621
AlwI	GGATC	5 cut(s)	190, 269, 282, 535, 548
AoxI	GGCC	2 cut(s)	217, 310
ApeKI	GCWGC	1 cut(s)	37
ArsI	GACNNNNNNTTYG	4 cut(s)	313, 338, 345, 370
AspS9I	GGNCC	4 cut(s)	132, 286, 311, 439
AsuC2I	CCSGG	2 cut(s)	130, 545
AsuHPI	GGTGA	1 cut(s)	487
AvaII	GGWCC	3 cut(s)	132, 286, 439
BamHI	GGATCC	2 cut(s)	274, 540
BanII	GRGCYC	2 cut(s)	408, 483
Bbv12I	GWGCWC	1 cut(s)	483
BbvI	GCAGC	1 cut(s)	24
BccI	CCATC	3 cut(s)	376, 560, 703
BceAI	ACGGC	2 cut(s)	263, 505
BciT130I	CCWGG	3 cut(s)	291, 309, 713
BcnI	CCSGG	2 cut(s)	130, 545
BcoDI	GTCTC	2 cut(s)	472, 621
BfmI	CTRYAG	2 cut(s)	38, 638
BisI	GCNGC	2 cut(s)	38, 296
BlsI	GCNGC	2 cut(s)	39, 297
Bme1390I	CCNGG	5 cut(s)	130, 291, 309, 545, 713
Bme18I	GGWCC	3 cut(s)	132, 286, 439
BmgT120I	GGNCC	4 cut(s)	132, 286, 311, 439
BmiI	GGNNCC	6 cut(s)	134, 276, 288, 405, 519, 542
BmrFI	CCNGG	5 cut(s)	130, 291, 309, 545, 713
BmsI	GCATC	2 cut(s)	510, 658
BpmI	CTGGAG	1 cut(s)	395
BpuMI	CCSGG	2 cut(s)	130, 545
Bsa29I	ATCGAT	1 cut(s)	666
BsaHI	GRCGYC	2 cut(s)	429, 453
BsaJI	CCNNGG	4 cut(s)	289, 290, 307, 334
Bsc4I	CCNNNNNNNGG	2 cut(s)	308, 448
Bse118I	RCCGGY	1 cut(s)	458
BseBI	CCWGG	3 cut(s)	291, 309, 713
BseCI	ATCGAT	1 cut(s)	666
BseDI	CCNNGG	4 cut(s)	289, 290, 307, 334
BseGI	GGATG	5 cut(s)	24, 25, 489, 619, 695
BseLI	CCNNNNNNNGG	2 cut(s)	308, 448
BseMII	CTCAG	1 cut(s)	177
BseRI	GAGGAG	2 cut(s)	122, 351
BseXI	GCAGC	1 cut(s)	24
BseYI	CCCAGC	1 cut(s)	699
Bsh1236I	CGCG	1 cut(s)	426
Bsh1285I	CGRYCG	1 cut(s)	415
BshFI	GGCC	2 cut(s)	219, 312
BshVI	ATCGAT	1 cut(s)	666
BsiEI	CGRYCG	1 cut(s)	415
BsiHKAI	GWGCWC	1 cut(s)	483
BsiSI	CCGG	5 cut(s)	130, 401, 459, 484, 544
BslFI	GGGAC	1 cut(s)	272
BslI	CCNNNNNNNGG	2 cut(s)	308, 448
BsmAI	GTCTC	2 cut(s)	472, 621
BsmBI	CGTCTC	1 cut(s)	472
BsmFI	GGGAC	1 cut(s)	272
BsnI	GGCC	2 cut(s)	219, 312
Bsp1286I	GDGCHC	2 cut(s)	408, 483
Bsp143I	GATC	7 cut(s)	182, 194, 253, 274, 412, 540, 573
BspACI	CCGC	4 cut(s)	284, 295, 349, 424
BspANI	GGCC	2 cut(s)	219, 312
BspCNI	CTCAG	1 cut(s)	178
BspDI	ATCGAT	1 cut(s)	666
BspFNI	CGCG	1 cut(s)	426
BspLI	GGNNCC	6 cut(s)	134, 276, 288, 405, 519, 542
BspMAI	CTGCAG	2 cut(s)	42, 642
BspPI	GGATC	5 cut(s)	190, 269, 282, 535, 548
BspQI	GCTCTTC	1 cut(s)	234
BsrFI	RCCGGY	1 cut(s)	458
BssAI	RCCGGY	1 cut(s)	458
BssECI	CCNNGG	4 cut(s)	289, 290, 307, 334
BssMI	GATC	7 cut(s)	182, 194, 253, 274, 412, 540, 573
BssNI	GRCGYC	2 cut(s)	429, 453
Bst2UI	CCWGG	3 cut(s)	291, 309, 713
Bst4CI	ACNGT	1 cut(s)	656
Bst6I	CTCTTC	1 cut(s)	234
BstACI	GRCGYC	2 cut(s)	429, 453
BstC8I	GCNNGC	2 cut(s)	419, 727
BstDEI	CTNAG	1 cut(s)	186
BstENI	CCTNNNNNAGG	1 cut(s)	446
BstF5I	GGATG	5 cut(s)	24, 25, 489, 619, 695
BstFNI	CGCG	1 cut(s)	426
BstKTI	GATC	7 cut(s)	185, 197, 256, 277, 415, 543, 576
BstMAI	GTCTC	2 cut(s)	472, 621
BstMBI	GATC	7 cut(s)	182, 194, 253, 274, 412, 540, 573
BstMCI	CGRYCG	1 cut(s)	415
BstMWI	GCNNNNNNNGC	3 cut(s)	397, 423, 567
BstNI	CCWGG	3 cut(s)	291, 309, 713
BstSCI	CCNGG	5 cut(s)	128, 289, 307, 543, 711
BstSFI	CTRYAG	2 cut(s)	38, 638
BstUI	CGCG	1 cut(s)	426
BstV1I	GCAGC	1 cut(s)	24
BstX2I	RGATCY	3 cut(s)	182, 274, 540
BstYI	RGATCY	3 cut(s)	182, 274, 540
Bsu15I	ATCGAT	1 cut(s)	666
BsuRI	GGCC	2 cut(s)	219, 312
BsuTUI	ATCGAT	1 cut(s)	666
BtgZI	GCGATG	1 cut(s)	577
BtsCI	GGATG	5 cut(s)	24, 25, 489, 619, 695
Cac8I	GCNNGC	2 cut(s)	419, 727
Cfr10I	RCCGGY	1 cut(s)	458
Cfr13I	GGNCC	4 cut(s)	132, 286, 311, 439
ClaI	ATCGAT	1 cut(s)	666
CseI	GACGC	2 cut(s)	437, 461
Csp6I	GTAC	1 cut(s)	643
CviAII	CATG	4 cut(s)	68, 394, 718, 748
CviQI	GTAC	1 cut(s)	643
DdeI	CTNAG	1 cut(s)	186
DpnI	GATC	7 cut(s)	184, 196, 255, 276, 414, 542, 575
DpnII	GATC	7 cut(s)	182, 194, 253, 274, 412, 540, 573
DrdI	GACNNNNNNGTC	1 cut(s)	198
DseDI	GACNNNNNNGTC	1 cut(s)	198
Eam1104I	CTCTTC	1 cut(s)	234
EarI	CTCTTC	1 cut(s)	234
Ecl136II	GAGCTC	1 cut(s)	481
Eco147I	AGGCCT	1 cut(s)	219
Eco24I	GRGCYC	2 cut(s)	408, 483
Eco47I	GGWCC	3 cut(s)	132, 286, 439
Eco53kI	GAGCTC	1 cut(s)	481
EcoICRI	GAGCTC	1 cut(s)	481
EcoNI	CCTNNNNNAGG	1 cut(s)	446
EcoO109I	RGGNCCY	1 cut(s)	439
EcoRII	CCWGG	3 cut(s)	289, 307, 711
EcoT38I	GRGCYC	2 cut(s)	408, 483
Esp3I	CGTCTC	1 cut(s)	472
FaeI	CATG	4 cut(s)	71, 397, 721, 751
FaiI	YATR	7 cut(s)	69, 327, 395, 625, 627, 719, 749
FalI	AAGNNNNNCTT	2 cut(s)	204, 236
FaqI	GGGAC	1 cut(s)	272
FatI	CATG	4 cut(s)	67, 393, 717, 747
Fnu4HI	GCNGC	2 cut(s)	38, 296
FokI	GGATG	5 cut(s)	11, 32, 476, 606, 682
FriOI	GRGCYC	2 cut(s)	408, 483
Fsp4HI	GCNGC	2 cut(s)	38, 296
GluI	GCNGC	2 cut(s)	38, 296
GsaI	CCCAGC	1 cut(s)	703
GsuI	CTGGAG	1 cut(s)	395
HaeIII	GGCC	2 cut(s)	219, 312
HapII	CCGG	5 cut(s)	130, 401, 459, 484, 544
HgaI	GACGC	2 cut(s)	437, 461
Hin1I	GRCGYC	2 cut(s)	429, 453
Hin1II	CATG	4 cut(s)	71, 397, 721, 751
HincII	GTYRAC	1 cut(s)	203
HindII	GTYRAC	1 cut(s)	203
HindIII	AAGCTT	1 cut(s)	161
HinfI	GANTC	2 cut(s)	152, 734
HpaII	CCGG	5 cut(s)	130, 401, 459, 484, 544
HphI	GGTGA	1 cut(s)	487
Hpy166II	GTNNAC	1 cut(s)	203
Hpy188I	TCNGA	5 cut(s)	157, 187, 266, 478, 526
Hpy188III	TCNNGA	1 cut(s)	374
Hpy8I	GTNNAC	1 cut(s)	203
Hpy99I	CGWCG	6 cut(s)	195, 249, 266, 431, 526, 536
HpyAV	CCTTC	6 cut(s)	65, 206, 230, 364, 418, 442
HpyCH4III	ACNGT	1 cut(s)	656
HpyCH4IV	ACGT	1 cut(s)	645
HpyCH4V	TGCA	3 cut(s)	40, 640, 671
HpyF10VI	GCNNNNNNNGC	3 cut(s)	397, 423, 567
HpyF3I	CTNAG	1 cut(s)	186
HpySE526I	ACGT	1 cut(s)	645
Hsp92I	GRCGYC	2 cut(s)	429, 453
Hsp92II	CATG	4 cut(s)	71, 397, 721, 751
Kzo9I	GATC	7 cut(s)	182, 194, 253, 274, 412, 540, 573
LguI	GCTCTTC	1 cut(s)	234
LmnI	GCTCC	6 cut(s)	376, 403, 426, 478, 486, 517
Lsp1109I	GCAGC	1 cut(s)	24
LweI	GCATC	2 cut(s)	510, 658
MaeII	ACGT	1 cut(s)	645
MalI	GATC	7 cut(s)	184, 196, 255, 276, 414, 542, 575
MboI	GATC	7 cut(s)	182, 194, 253, 274, 412, 540, 573
MboII	GAAGA	1 cut(s)	221
MflI	RGATCY	3 cut(s)	182, 274, 540
MhlI	GDGCHC	2 cut(s)	408, 483
MluCI	AATT	2 cut(s)	267, 512
MmeI	TCCRAC	3 cut(s)	244, 456, 504
MspI	CCGG	5 cut(s)	130, 401, 459, 484, 544
MspR9I	CCNGG	5 cut(s)	130, 291, 309, 545, 713
MvaI	CCWGG	3 cut(s)	291, 309, 713
MvnI	CGCG	1 cut(s)	426
MwoI	GCNNNNNNNGC	3 cut(s)	397, 423, 567
NciI	CCSGG	2 cut(s)	130, 545
NdeII	GATC	7 cut(s)	182, 194, 253, 274, 412, 540, 573
NlaIII	CATG	4 cut(s)	71, 397, 721, 751
NlaIV	GGNNCC	6 cut(s)	134, 276, 288, 405, 519, 542
NmeAIII	GCCGAG	1 cut(s)	359
PasI	CCCWGGG	1 cut(s)	290
PceI	AGGCCT	1 cut(s)	219
PciSI	GCTCTTC	1 cut(s)	234
PfeI	GAWTC	2 cut(s)	152, 734
PfoI	TCCNGGA	1 cut(s)	543
PkrI	GCNGC	2 cut(s)	39, 297
Ple19I	CGATCG	1 cut(s)	415
PpuMI	RGGWCCY	1 cut(s)	439
Psp124BI	GAGCTC	1 cut(s)	483
Psp5II	RGGWCCY	1 cut(s)	439
Psp6I	CCWGG	3 cut(s)	289, 307, 711
PspFI	CCCAGC	1 cut(s)	699
PspGI	CCWGG	3 cut(s)	289, 307, 711
PspN4I	GGNNCC	6 cut(s)	134, 276, 288, 405, 519, 542
PspPI	GGNCC	4 cut(s)	132, 286, 311, 439
PspPPI	RGGWCCY	1 cut(s)	439
PstI	CTGCAG	2 cut(s)	42, 642
PsuI	RGATCY	3 cut(s)	182, 274, 540
PvuI	CGATCG	1 cut(s)	415
RsaI	GTAC	1 cut(s)	644
RsaNI	GTAC	1 cut(s)	643
SacI	GAGCTC	1 cut(s)	483
SapI	GCTCTTC	1 cut(s)	234
SatI	GCNGC	2 cut(s)	38, 296
Sau3AI	GATC	7 cut(s)	182, 194, 253, 274, 412, 540, 573
Sau96I	GGNCC	4 cut(s)	132, 286, 311, 439
ScrFI	CCNGG	5 cut(s)	130, 291, 309, 545, 713
SduI	GDGCHC	2 cut(s)	408, 483
SfaNI	GCATC	2 cut(s)	510, 658
SfcI	CTRYAG	2 cut(s)	38, 638
SinI	GGWCC	3 cut(s)	132, 286, 439
Sse9I	AATT	2 cut(s)	267, 512
SseBI	AGGCCT	1 cut(s)	219
SsiI	CCGC	4 cut(s)	284, 295, 349, 424
SspI	AATATT	1 cut(s)	678
SstI	GAGCTC	1 cut(s)	483
StuI	AGGCCT	1 cut(s)	219
StyD4I	CCNGG	5 cut(s)	128, 289, 307, 543, 711
TaaI	ACNGT	1 cut(s)	656
TaiI	ACGT	1 cut(s)	648
TaqI	TCGA	9 cut(s)	64, 207, 232, 357, 411, 444, 531, 552, 666
TasI	AATT	2 cut(s)	267, 512
TauI	GCSGC	1 cut(s)	298
TfiI	GAWTC	2 cut(s)	152, 734
TseI	GCWGC	1 cut(s)	37
TspDTI	ATGAA	5 cut(s)	17, 84, 225, 410, 580
TspGWI	ACGGA	2 cut(s)	252, 460
VpaK11BI	GGWCC	3 cut(s)	132, 286, 439
XagI	CCTNNNNNAGG	1 cut(s)	446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.