Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002702

Physical Location & Seq

Genomic Coordinates Reverse (-)

40965184 .. 40965420

Gene Structure 237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32327

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGGGGATGCACATGAAGCCCTTCAATCGCCAGCTCCGCGACGCCTTCAAGGTCCTTAACAAGGAAGCCACCGACTTCGTCTCCTTCTCGGAGCTCCGGTACATCCTCACCAGCATCGGCGAGAGATTGGAGATCTTCCCTAATAACTTTGGGGCCGGAGTCGTTGTTGGTGGAGCTGGAGACGAGTTTGCCAGTATAAATGCGCCGGCGTCGTTGTTGGATGGTGTCACACCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko03010 ko04626 map03010 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_6 EF-hand_7

Protein Analysis

78

Amino Acids

8.48

Weight (kDa)

5.15

Isoelectric Point (pI)

33.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002702)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12310 AT1G62820
fragaria_vesca	FvH4_5g00650 FvH4_7g20700
malus_domestica	MD03G1151100.v1.1 MD04G1079800.v1.1 MD06G1074600.v1.1 MD07G1265800.v1.1 MD11G1152700.v1.1 MD17G1283300.v1.1
prunus_persica	Prupe.5G079300_v2.0.a1
pyrus_communis	pycom06g05340
rosa_chinensis	RchiOBHm_Chr1g0364931 RchiOBHm_Chr3g0455101 RchiOBHm_Chr5g0045151 RchiOBHm_Chr6g0299731 RchiOBHm_Chr7g0201611
rosa_laevigata	RLG00000027458
rosa_multiflora	Rmu_sc0002502.1_g000006 Rmu_sc0002895.1_g000017 Rmu_sc0006410.1_g000028 Rmu_sc0007033.1_g000001 Rmu_sc0011159.1_g000005 Rmu_ssc0000112.1_g000026 Rmu_ssc0000304.1_g000001
rosa_roxburghii	Rroxscaffold_3G00255200 Rroxscaffold_4G00292060
rosa_rugosa	Rorug01G0318600 Rorug07G0065200
rosa_samantha	Rh1BG288500 Rh1CG305200 Rh1DG320100 Rh2CG069200 Rh7AG191700 Rh7BG194000 Rh7DG197000
rosa_wichuraiana	Rw1G029000 Rw5G028070 Rw7G016820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	39
AciI	CCGC	1 cut(s)	37
AcyI	GRCGYC	2 cut(s)	42, 209
AfaI	GTAC	1 cut(s)	101
AfiI	CCNNNNNNNGG	1 cut(s)	61
AgsI	TTSAA	2 cut(s)	25, 49
AluBI	AGCT	3 cut(s)	34, 94, 176
AluI	AGCT	3 cut(s)	34, 94, 176
Alw21I	GWGCWC	1 cut(s)	96
Alw26I	GTCTC	2 cut(s)	85, 174
AoxI	GGCC	1 cut(s)	153
Asp700I	GAANNNNTTC	1 cut(s)	20
AspLEI	GCGC	1 cut(s)	205
AspS9I	GGNCC	2 cut(s)	52, 153
AsuHPI	GGTGA	1 cut(s)	100
AvaII	GGWCC	1 cut(s)	52
BanII	GRGCYC	1 cut(s)	96
Bbv12I	GWGCWC	1 cut(s)	96
BccI	CCATC	1 cut(s)	215
BcoDI	GTCTC	2 cut(s)	85, 174
BglII	AGATCT	1 cut(s)	132
Bme18I	GGWCC	1 cut(s)	52
BmgT120I	GGNCC	2 cut(s)	52, 153
BmiI	GGNNCC	1 cut(s)	154
BmsI	GCATC	1 cut(s)	123
BpmI	CTGGAG	1 cut(s)	198
BsaHI	GRCGYC	2 cut(s)	42, 209
BsaWI	WCCGGW	1 cut(s)	96
BsaXI	ACNNNNNCTCC	6 cut(s)	65, 83, 95, 113, 150, 180
Bsc4I	CCNNNNNNNGG	1 cut(s)	61
Bse118I	RCCGGY	1 cut(s)	205
Bse1I	ACTGG	1 cut(s)	192
BseGI	GGATG	3 cut(s)	12, 102, 226
BseLI	CCNNNNNNNGG	1 cut(s)	61
BseNI	ACTGG	1 cut(s)	192
Bsh1236I	CGCG	1 cut(s)	39
BshFI	GGCC	1 cut(s)	155
BsiHKAI	GWGCWC	1 cut(s)	96
BsiSI	CCGG	3 cut(s)	97, 156, 206
BslI	CCNNNNNNNGG	1 cut(s)	61
BsmAI	GTCTC	2 cut(s)	85, 174
BsmBI	CGTCTC	2 cut(s)	85, 174
BsnI	GGCC	1 cut(s)	155
Bsp1286I	GDGCHC	1 cut(s)	96
Bsp143I	GATC	1 cut(s)	132
BspACI	CCGC	1 cut(s)	37
BspANI	GGCC	1 cut(s)	155
BspFNI	CGCG	1 cut(s)	39
BspLI	GGNNCC	1 cut(s)	154
BsrFI	RCCGGY	1 cut(s)	205
BsrI	ACTGG	1 cut(s)	192
BssAI	RCCGGY	1 cut(s)	205
BssMI	GATC	1 cut(s)	132
BssNI	GRCGYC	2 cut(s)	42, 209
BstACI	GRCGYC	2 cut(s)	42, 209
BstC8I	GCNNGC	2 cut(s)	32, 207
BstENI	CCTNNNNNAGG	1 cut(s)	59
BstF5I	GGATG	3 cut(s)	12, 102, 226
BstFNI	CGCG	1 cut(s)	39
BstHHI	GCGC	1 cut(s)	205
BstKTI	GATC	1 cut(s)	135
BstMAI	GTCTC	2 cut(s)	85, 174
BstMBI	GATC	1 cut(s)	132
BstMWI	GCNNNNNNNGC	2 cut(s)	16, 36
BstUI	CGCG	1 cut(s)	39
BstX2I	RGATCY	1 cut(s)	132
BstYI	RGATCY	1 cut(s)	132
BsuRI	GGCC	1 cut(s)	155
BtsCI	GGATG	3 cut(s)	12, 102, 226
Cac8I	GCNNGC	2 cut(s)	32, 207
CfoI	GCGC	1 cut(s)	205
Cfr10I	RCCGGY	1 cut(s)	205
Cfr13I	GGNCC	2 cut(s)	52, 153
CseI	GACGC	2 cut(s)	50, 198
Csp6I	GTAC	1 cut(s)	100
CviAII	CATG	1 cut(s)	13
CviJI	RGCY	6 cut(s)	19, 34, 68, 94, 155, 176
CviKI_1	RGCY	6 cut(s)	19, 34, 68, 94, 155, 176
CviQI	GTAC	1 cut(s)	100
DpnI	GATC	1 cut(s)	134
DpnII	GATC	1 cut(s)	132
Ecl136II	GAGCTC	1 cut(s)	94
Eco24I	GRGCYC	1 cut(s)	96
Eco47I	GGWCC	1 cut(s)	52
Eco53kI	GAGCTC	1 cut(s)	94
EcoICRI	GAGCTC	1 cut(s)	94
EcoNI	CCTNNNNNAGG	1 cut(s)	59
EcoO109I	RGGNCCY	1 cut(s)	52
EcoT38I	GRGCYC	1 cut(s)	96
Esp3I	CGTCTC	2 cut(s)	85, 174
FaeI	CATG	1 cut(s)	16
FaiI	YATR	2 cut(s)	14, 197
FatI	CATG	1 cut(s)	12
FokI	GGATG	3 cut(s)	19, 89, 233
FriOI	GRGCYC	1 cut(s)	96
GlaI	GCGC	1 cut(s)	204
GsuI	CTGGAG	1 cut(s)	198
HaeIII	GGCC	1 cut(s)	155
HapII	CCGG	3 cut(s)	97, 156, 206
HgaI	GACGC	2 cut(s)	50, 198
HhaI	GCGC	1 cut(s)	205
Hin1I	GRCGYC	2 cut(s)	42, 209
Hin1II	CATG	1 cut(s)	16
Hin6I	GCGC	1 cut(s)	203
HinP1I	GCGC	1 cut(s)	203
HinfI	GANTC	1 cut(s)	159
HpaII	CCGG	3 cut(s)	97, 156, 206
HphI	GGTGA	1 cut(s)	100
Hpy188I	TCNGA	1 cut(s)	91
Hpy99I	CGWCG	2 cut(s)	44, 214
HpyAV	CCTTC	3 cut(s)	31, 55, 94
HpyCH4V	TGCA	1 cut(s)	10
HpyF10VI	GCNNNNNNNGC	2 cut(s)	16, 36
Hsp92I	GRCGYC	2 cut(s)	42, 209
Hsp92II	CATG	1 cut(s)	16
HspAI	GCGC	1 cut(s)	203
KroI	GCCGGC	1 cut(s)	205
KroNI	GCCGGC	1 cut(s)	207
Kzo9I	GATC	1 cut(s)	132
LmnI	GCTCC	4 cut(s)	39, 91, 99, 173
LpnPI	CCDG	7 cut(s)	44, 110, 124, 162, 169, 205, 219
LweI	GCATC	1 cut(s)	123
MaeIII	GTNAC	1 cut(s)	226
MalI	GATC	1 cut(s)	134
MboI	GATC	1 cut(s)	132
MboII	GAAGA	1 cut(s)	127
MflI	RGATCY	1 cut(s)	132
MhlI	GDGCHC	1 cut(s)	96
MlyI	GAGTC	1 cut(s)	168
MmeI	TCCRAC	1 cut(s)	198
MnlI	CCTC	1 cut(s)	116
MreI	CGCCGGCG	1 cut(s)	205
MroNI	GCCGGC	1 cut(s)	205
MroXI	GAANNNNTTC	1 cut(s)	20
MseI	TTAA	1 cut(s)	57
MspI	CCGG	3 cut(s)	97, 156, 206
MvnI	CGCG	1 cut(s)	39
MwoI	GCNNNNNNNGC	2 cut(s)	16, 36
NaeI	GCCGGC	1 cut(s)	207
NdeII	GATC	1 cut(s)	132
NgoMIV	GCCGGC	1 cut(s)	205
NlaIII	CATG	1 cut(s)	16
NlaIV	GGNNCC	1 cut(s)	154
NmuCI	GTSAC	1 cut(s)	226
PdiI	GCCGGC	1 cut(s)	207
PdmI	GAANNNNTTC	1 cut(s)	20
PflFI	GACNNNGTC	1 cut(s)	77
PleI	GAGTC	1 cut(s)	167
PpsI	GAGTC	1 cut(s)	167
PpuMI	RGGWCCY	1 cut(s)	52
Psp124BI	GAGCTC	1 cut(s)	96
Psp5II	RGGWCCY	1 cut(s)	52
PspN4I	GGNNCC	1 cut(s)	154
PspPI	GGNCC	2 cut(s)	52, 153
PspPPI	RGGWCCY	1 cut(s)	52
PsuI	RGATCY	1 cut(s)	132
PsyI	GACNNNGTC	1 cut(s)	77
RsaI	GTAC	1 cut(s)	101
RsaNI	GTAC	1 cut(s)	100
SacI	GAGCTC	1 cut(s)	96
SaqAI	TTAA	1 cut(s)	57
Sau3AI	GATC	1 cut(s)	132
Sau96I	GGNCC	2 cut(s)	52, 153
SchI	GAGTC	1 cut(s)	168
SduI	GDGCHC	1 cut(s)	96
SetI	ASST	4 cut(s)	36, 54, 96, 178
SfaNI	GCATC	1 cut(s)	123
SgrAI	CRCCGGYG	1 cut(s)	205
SinI	GGWCC	1 cut(s)	52
SsiI	CCGC	1 cut(s)	37
SstI	GAGCTC	1 cut(s)	96
Tru1I	TTAA	1 cut(s)	57
Tru9I	TTAA	1 cut(s)	57
TseFI	GTSAC	1 cut(s)	226
Tsp45I	GTSAC	1 cut(s)	226
TspDTI	ATGAA	1 cut(s)	29
Tth111I	GACNNNGTC	1 cut(s)	77
VpaK11BI	GGWCC	1 cut(s)	52
XagI	CCTNNNNNAGG	1 cut(s)	59
XmnI	GAANNNNTTC	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.