Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011159.1

Orthogroup ID

OG0002702

Physical Location & Seq

Genomic Coordinates Forward (+)

34145 .. 39184

Gene Structure 5040 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011159.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

atggccaacattttggcagagaaagagagaaaaaccctagagagctgtctaaagtcgacaaaaaaaaccaacttacgtccagcgacgcgcccttgggggatcgtctttggacaggctgatgaggttgctttgcagactggtggggctccatggcagaggcgtggtccaaggatggtgaatgggcgagacaatcccgaaagggatctatttcgctttgtgtttcggccacggaagtctgcggggattaagggtcttcagctgtgggggcagtggggcgatgcagtgcggcggcgtactgatgatgtgtggcggtgcggacgcgatgggttttgtgcaggtctatgcaccttgtgctccttgtctgctctaggtaggtgctttgcgaaatggaaccgtggaagggttactatcactccgacccatgcccaactcaaatccatagtccccgaggagaagctaaccacccccttcgacttcaaacgcttcctggagctgatggggatgcacatgaagcctgagcccttcaatcgccagctccgcgacgccttcaagtgccttgacaaggacgccaccgacttcgtctccttctcggagctctggtacatccctaccagcattggcgagaaattggaggtcttccctaataacattggggtcggagtcgttgttggtggcgctggagacgagtttgccagtagaaatgcgccggcgtcgttgttggatggtgtcacaccctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko03010 ko04626 map03010 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_6 EF-hand_7

Protein Analysis

245

Amino Acids

27.48

Weight (kDa)

9.58

Isoelectric Point (pI)

41.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002702)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12310 AT1G62820
fragaria_vesca	FvH4_5g00650 FvH4_7g20700
malus_domestica	MD03G1151100.v1.1 MD04G1079800.v1.1 MD06G1074600.v1.1 MD07G1265800.v1.1 MD11G1152700.v1.1 MD17G1283300.v1.1
prunus_persica	Prupe.5G079300_v2.0.a1
pyrus_communis	pycom06g05340
rosa_chinensis	RchiOBHm_Chr1g0364931 RchiOBHm_Chr3g0455101 RchiOBHm_Chr5g0045151 RchiOBHm_Chr6g0299731 RchiOBHm_Chr7g0201611
rosa_laevigata	RLG00000027458
rosa_multiflora	Rmu_sc0002502.1_g000006 Rmu_sc0002895.1_g000017 Rmu_sc0006410.1_g000028 Rmu_sc0007033.1_g000001 Rmu_sc0011159.1_g000005 Rmu_ssc0000112.1_g000026 Rmu_ssc0000304.1_g000001
rosa_roxburghii	Rroxscaffold_3G00255200 Rroxscaffold_4G00292060
rosa_rugosa	Rorug01G0318600 Rorug07G0065200
rosa_samantha	Rh1BG288500 Rh1CG305200 Rh1DG320100 Rh2CG069200 Rh7AG191700 Rh7BG194000 Rh7DG197000
rosa_wichuraiana	Rw1G029000 Rw5G028070 Rw7G016820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	326
AccI	GTMKAC	1 cut(s)	56
AccII	CGCG	3 cut(s)	88, 321, 540
AciI	CCGC	6 cut(s)	239, 286, 289, 310, 315, 538
AclWI	GGATC	2 cut(s)	107, 210
AcoI	YGGCCR	2 cut(s)	3, 224
AcuI	CTGAAG	1 cut(s)	239
AcyI	GRCGYC	3 cut(s)	543, 567, 710
AdeI	CACNNNGTG	1 cut(s)	351
AfaI	GTAC	2 cut(s)	295, 602
AfiI	CCNNNNNNNGG	2 cut(s)	400, 562
AgsI	TTSAA	3 cut(s)	478, 526, 550
AjnI	CCWGG	1 cut(s)	486
AluBI	AGCT	6 cut(s)	45, 259, 457, 493, 535, 595
AluI	AGCT	6 cut(s)	45, 259, 457, 493, 535, 595
Alw21I	GWGCWC	2 cut(s)	356, 597
Alw26I	GTCTC	3 cut(s)	180, 586, 675
AlwI	GGATC	2 cut(s)	107, 210
Ama87I	CYCGRG	1 cut(s)	446
AoxI	GGCC	2 cut(s)	3, 224
ArsI	GACNNNNNNTTYG	2 cut(s)	426, 458
AspLEI	GCGC	3 cut(s)	90, 677, 706
AspS9I	GGNCC	1 cut(s)	164
AsuHPI	GGTGA	1 cut(s)	187
AvaI	CYCGRG	1 cut(s)	446
AvaII	GGWCC	1 cut(s)	164
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	3 cut(s)	148, 522, 597
BbsI	GAAGAC	2 cut(s)	245, 628
Bbv12I	GWGCWC	2 cut(s)	356, 597
BccI	CCATC	4 cut(s)	166, 317, 490, 716
BciT130I	CCWGG	1 cut(s)	488
BcoDI	GTCTC	3 cut(s)	180, 586, 675
BfaI	CTAG	2 cut(s)	38, 368
BfoI	RGCGCY	1 cut(s)	678
BfuAI	ACCTGC	1 cut(s)	326
BisI	GCNGC	2 cut(s)	287, 290
BlsI	GCNGC	2 cut(s)	288, 291
Bme1390I	CCNGG	1 cut(s)	488
Bme18I	GGWCC	1 cut(s)	164
BmeT110I	CYCGRG	1 cut(s)	446
BmgT120I	GGNCC	1 cut(s)	164
BmiI	GGNNCC	2 cut(s)	147, 392
BmrFI	CCNGG	1 cut(s)	488
BmsI	GCATC	2 cut(s)	268, 492
BpiI	GAAGAC	2 cut(s)	245, 628
BpmI	CTGGAG	2 cut(s)	509, 699
Bpu10I	CCTNAGC	1 cut(s)	516
BsaHI	GRCGYC	3 cut(s)	543, 567, 710
BsaJI	CCNNGG	6 cut(s)	92, 149, 167, 227, 394, 447
BsaXI	ACNNNNNCTCC	8 cut(s)	397, 427, 566, 584, 596, 614, 651, 681
Bsc4I	CCNNNNNNNGG	2 cut(s)	400, 562
Bse118I	RCCGGY	1 cut(s)	706
Bse1I	ACTGG	2 cut(s)	142, 693
BseBI	CCWGG	1 cut(s)	488
BseDI	CCNNGG	6 cut(s)	92, 149, 167, 227, 394, 447
BseGI	GGATG	4 cut(s)	177, 507, 603, 727
BseLI	CCNNNNNNNGG	2 cut(s)	400, 562
BseMII	CTCAG	1 cut(s)	507
BseNI	ACTGG	2 cut(s)	142, 693
BseRI	GAGGAG	1 cut(s)	464
BsgI	GTGCAG	1 cut(s)	354
Bsh1236I	CGCG	3 cut(s)	88, 321, 540
BshFI	GGCC	2 cut(s)	5, 226
BsiHKAI	GWGCWC	2 cut(s)	356, 597
BsiHKCI	CYCGRG	1 cut(s)	446
BsiSI	CCGG	1 cut(s)	707
BslFI	GGGAC	1 cut(s)	428
BslI	CCNNNNNNNGG	2 cut(s)	400, 562
BsmAI	GTCTC	3 cut(s)	180, 586, 675
BsmBI	CGTCTC	2 cut(s)	586, 675
BsmFI	GGGAC	1 cut(s)	428
BsnI	GGCC	2 cut(s)	5, 226
BsoBI	CYCGRG	1 cut(s)	446
Bsp1286I	GDGCHC	4 cut(s)	148, 356, 522, 597
Bsp143I	GATC	2 cut(s)	99, 202
Bsp19I	CCATGG	1 cut(s)	149
BspACI	CCGC	6 cut(s)	239, 286, 289, 310, 315, 538
BspANI	GGCC	2 cut(s)	5, 226
BspCNI	CTCAG	1 cut(s)	508
BspFNI	CGCG	3 cut(s)	88, 321, 540
BspLI	GGNNCC	2 cut(s)	147, 392
BspMI	ACCTGC	1 cut(s)	326
BspPI	GGATC	2 cut(s)	107, 210
BsrFI	RCCGGY	1 cut(s)	706
BsrI	ACTGG	2 cut(s)	142, 693
BssAI	RCCGGY	1 cut(s)	706
BssECI	CCNNGG	6 cut(s)	92, 149, 167, 227, 394, 447
BssMI	GATC	2 cut(s)	99, 202
BssNI	GRCGYC	3 cut(s)	543, 567, 710
BssT1I	CCWWGG	3 cut(s)	92, 149, 167
Bst2UI	CCWGG	1 cut(s)	488
Bst4CI	ACNGT	1 cut(s)	395
BstACI	GRCGYC	3 cut(s)	543, 567, 710
BstAPI	GCANNNNNTGC	1 cut(s)	351
BstC8I	GCNNGC	2 cut(s)	533, 708
BstDEI	CTNAG	1 cut(s)	516
BstDSI	CCRYGG	3 cut(s)	149, 227, 394
BstENI	CCTNNNNNAGG	1 cut(s)	560
BstF5I	GGATG	4 cut(s)	177, 507, 603, 727
BstFNI	CGCG	3 cut(s)	88, 321, 540
BstH2I	RGCGCY	1 cut(s)	678
BstHHI	GCGC	3 cut(s)	90, 677, 706
BstKTI	GATC	2 cut(s)	102, 205
BstMAI	GTCTC	3 cut(s)	180, 586, 675
BstMBI	GATC	2 cut(s)	99, 202
BstMWI	GCNNNNNNNGC	4 cut(s)	265, 351, 511, 537
BstNI	CCWGG	1 cut(s)	488
BstSCI	CCNGG	1 cut(s)	486
BstUI	CGCG	3 cut(s)	88, 321, 540
BstV2I	GAAGAC	2 cut(s)	245, 628
BstX2I	RGATCY	1 cut(s)	202
BstXI	CCANNNNNNTGG	1 cut(s)	13
BstYI	RGATCY	1 cut(s)	202
BsuRI	GGCC	2 cut(s)	5, 226
BtgI	CCRYGG	3 cut(s)	149, 227, 394
BtgZI	GCGATG	2 cut(s)	291, 336
BtsCI	GGATG	4 cut(s)	177, 507, 603, 727
BtsI	GCAGTG	2 cut(s)	275, 288
BtsIMutI	CAGTG	2 cut(s)	275, 288
BveI	ACCTGC	1 cut(s)	326
Cac8I	GCNNGC	2 cut(s)	533, 708
CfoI	GCGC	3 cut(s)	90, 677, 706
Cfr10I	RCCGGY	1 cut(s)	706
Cfr13I	GGNCC	1 cut(s)	164
CseI	GACGC	5 cut(s)	94, 327, 551, 575, 699
Csp6I	GTAC	2 cut(s)	294, 601
CviAII	CATG	3 cut(s)	150, 422, 508
CviQI	GTAC	2 cut(s)	294, 601
DdeI	CTNAG	1 cut(s)	516
DpnI	GATC	2 cut(s)	101, 204
DpnII	GATC	2 cut(s)	99, 202
DraIII	CACNNNGTG	1 cut(s)	351
EaeI	YGGCCR	2 cut(s)	3, 224
Ecl136II	GAGCTC	1 cut(s)	595
Eco130I	CCWWGG	3 cut(s)	92, 149, 167
Eco24I	GRGCYC	3 cut(s)	148, 522, 597
Eco47I	GGWCC	1 cut(s)	164
Eco53kI	GAGCTC	1 cut(s)	595
Eco57I	CTGAAG	1 cut(s)	239
Eco88I	CYCGRG	1 cut(s)	446
EcoICRI	GAGCTC	1 cut(s)	595
EcoNI	CCTNNNNNAGG	1 cut(s)	560
EcoRII	CCWGG	1 cut(s)	486
EcoT14I	CCWWGG	3 cut(s)	92, 149, 167
EcoT38I	GRGCYC	3 cut(s)	148, 522, 597
ErhI	CCWWGG	3 cut(s)	92, 149, 167
Esp3I	CGTCTC	2 cut(s)	586, 675
FaeI	CATG	3 cut(s)	153, 425, 511
FaiI	YATR	5 cut(s)	151, 343, 423, 440, 509
FaqI	GGGAC	1 cut(s)	428
FatI	CATG	3 cut(s)	149, 421, 507
FauI	CCCGC	1 cut(s)	232
FblI	GTMKAC	1 cut(s)	56
Fnu4HI	GCNGC	2 cut(s)	287, 290
FokI	GGATG	4 cut(s)	184, 514, 590, 734
FriOI	GRGCYC	3 cut(s)	148, 522, 597
Fsp4HI	GCNGC	2 cut(s)	287, 290
FspBI	CTAG	2 cut(s)	38, 368
GlaI	GCGC	3 cut(s)	89, 676, 705
GluI	GCNGC	2 cut(s)	287, 290
GsuI	CTGGAG	2 cut(s)	509, 699
HaeII	RGCGCY	1 cut(s)	678
HaeIII	GGCC	2 cut(s)	5, 226
HapII	CCGG	1 cut(s)	707
HgaI	GACGC	5 cut(s)	94, 327, 551, 575, 699
HhaI	GCGC	3 cut(s)	90, 677, 706
Hin1I	GRCGYC	3 cut(s)	543, 567, 710
Hin1II	CATG	3 cut(s)	153, 425, 511
Hin6I	GCGC	3 cut(s)	88, 675, 704
HinP1I	GCGC	3 cut(s)	88, 675, 704
HincII	GTYRAC	1 cut(s)	57
HindII	GTYRAC	1 cut(s)	57
HinfI	GANTC	1 cut(s)	660
HpaII	CCGG	1 cut(s)	707
HphI	GGTGA	1 cut(s)	187
Hpy166II	GTNNAC	1 cut(s)	57
Hpy188I	TCNGA	3 cut(s)	417, 592, 659
Hpy188III	TCNNGA	1 cut(s)	194
Hpy8I	GTNNAC	1 cut(s)	57
Hpy99I	CGWCG	3 cut(s)	88, 545, 715
HpyAV	CCTTC	5 cut(s)	393, 478, 532, 556, 595
HpyCH4III	ACNGT	1 cut(s)	395
HpyCH4IV	ACGT	1 cut(s)	76
HpyCH4V	TGCA	5 cut(s)	133, 281, 335, 345, 505
HpyF10VI	GCNNNNNNNGC	4 cut(s)	265, 351, 511, 537
HpyF3I	CTNAG	1 cut(s)	516
HpySE526I	ACGT	1 cut(s)	76
Hsp92I	GRCGYC	3 cut(s)	543, 567, 710
Hsp92II	CATG	3 cut(s)	153, 425, 511
HspAI	GCGC	3 cut(s)	88, 675, 704
KroI	GCCGGC	1 cut(s)	706
KroNI	GCCGGC	1 cut(s)	708
Kzo9I	GATC	2 cut(s)	99, 202
LmnI	GCTCC	5 cut(s)	151, 359, 490, 540, 592
LweI	GCATC	2 cut(s)	268, 492
MaeI	CTAG	2 cut(s)	38, 368
MaeII	ACGT	1 cut(s)	76
MaeIII	GTNAC	2 cut(s)	403, 727
MalI	GATC	2 cut(s)	101, 204
MboI	GATC	2 cut(s)	99, 202
MboII	GAAGA	2 cut(s)	245, 628
MflI	RGATCY	1 cut(s)	202
MhlI	GDGCHC	4 cut(s)	148, 356, 522, 597
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	626
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	669
MmeI	TCCRAC	3 cut(s)	440, 637, 699
MnlI	CCTC	4 cut(s)	115, 150, 442, 625
Mox20I	TGGCCA	1 cut(s)	5
MreI	CGCCGGCG	1 cut(s)	706
MroNI	GCCGGC	1 cut(s)	706
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	246
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	259
MspI	CCGG	1 cut(s)	707
MspR9I	CCNGG	1 cut(s)	488
MvaI	CCWGG	1 cut(s)	488
MvnI	CGCG	3 cut(s)	88, 321, 540
MwoI	GCNNNNNNNGC	4 cut(s)	265, 351, 511, 537
NaeI	GCCGGC	1 cut(s)	708
NcoI	CCATGG	1 cut(s)	149
NdeII	GATC	2 cut(s)	99, 202
NgoMIV	GCCGGC	1 cut(s)	706
NlaIII	CATG	3 cut(s)	153, 425, 511
NlaIV	GGNNCC	2 cut(s)	147, 392
NmuCI	GTSAC	1 cut(s)	727
PdiI	GCCGGC	1 cut(s)	708
PflFI	GACNNNGTC	1 cut(s)	578
PfoI	TCCNGGA	1 cut(s)	486
PkrI	GCNGC	2 cut(s)	288, 291
PleI	GAGTC	1 cut(s)	668
PpsI	GAGTC	1 cut(s)	668
Psp124BI	GAGCTC	1 cut(s)	597
Psp6I	CCWGG	1 cut(s)	486
PspGI	CCWGG	1 cut(s)	486
PspN4I	GGNNCC	2 cut(s)	147, 392
PspPI	GGNCC	1 cut(s)	164
PsuI	RGATCY	1 cut(s)	202
PsyI	GACNNNGTC	1 cut(s)	578
PvuII	CAGCTG	1 cut(s)	259
RsaI	GTAC	2 cut(s)	295, 602
RsaNI	GTAC	2 cut(s)	294, 601
SacI	GAGCTC	1 cut(s)	597
SalI	GTCGAC	1 cut(s)	55
SaqAI	TTAA	1 cut(s)	246
SatI	GCNGC	2 cut(s)	287, 290
Sau3AI	GATC	2 cut(s)	99, 202
Sau96I	GGNCC	1 cut(s)	164
SchI	GAGTC	1 cut(s)	669
ScrFI	CCNGG	1 cut(s)	488
SduI	GDGCHC	4 cut(s)	148, 356, 522, 597
SfaNI	GCATC	2 cut(s)	268, 492
SgrAI	CRCCGGYG	1 cut(s)	706
SinI	GGWCC	1 cut(s)	164
Sse9I	AATT	1 cut(s)	626
SsiI	CCGC	6 cut(s)	239, 286, 289, 310, 315, 538
SspMI	CTAG	2 cut(s)	38, 368
SstI	GAGCTC	1 cut(s)	597
StyD4I	CCNGG	1 cut(s)	486
StyI	CCWWGG	3 cut(s)	92, 149, 167
TaaI	ACNGT	1 cut(s)	395
TaiI	ACGT	1 cut(s)	79
TaqI	TCGA	2 cut(s)	56, 471
TasI	AATT	1 cut(s)	626
TauI	GCSGC	2 cut(s)	289, 292
Tru1I	TTAA	1 cut(s)	246
Tru9I	TTAA	1 cut(s)	246
TscAI	CASTG	2 cut(s)	275, 288
TseFI	GTSAC	1 cut(s)	727
Tsp45I	GTSAC	1 cut(s)	727
TspDTI	ATGAA	1 cut(s)	524
TspGWI	ACGGA	1 cut(s)	244
TspRI	CASTG	2 cut(s)	275, 288
Tth111I	GACNNNGTC	1 cut(s)	578
VpaK11BI	GGWCC	1 cut(s)	164
XagI	CCTNNNNNAGG	1 cut(s)	560
XmiI	GTMKAC	1 cut(s)	56
XspI	CTAG	2 cut(s)	38, 368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.